Wall clock time and date at job start Sat Apr 11 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.01178 * 2 1 4 4 C 1.54266 * 110.03438 * 238.60935 * 2 1 3 5 5 C 1.54891 * 104.19479 * 217.05337 * 4 2 1 6 6 C 1.54890 * 102.74716 * 37.94268 * 5 4 2 7 7 H 1.09005 * 110.48842 * 80.86959 * 6 5 4 8 8 C 1.53000 * 110.48417 * 203.37697 * 6 5 4 9 9 C 1.50700 * 109.47256 * 291.75430 * 8 6 5 10 10 O 1.21283 * 119.99835 * 0.02562 * 9 8 6 11 11 N 1.34779 * 119.99936 * 179.97438 * 9 8 6 12 12 C 1.47066 * 136.05571 * 180.02562 * 11 9 8 13 13 C 1.53504 * 88.04678 * 207.12426 * 12 11 9 14 14 N 1.46497 * 114.20469 * 87.55042 * 13 12 11 15 15 C 1.34770 * 119.99975 * 155.00310 * 14 13 12 16 16 O 1.21276 * 120.00149 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00244 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47267 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99896 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00101 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99846 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00092 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99815 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47356 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47136 * 120.00408 * 23 21 19 26 26 H 1.48502 * 109.47404 * 240.00445 * 23 21 19 27 27 C 1.47064 * 136.05768 * 0.05168 * 11 9 8 28 28 C 1.54089 * 109.96921 * 121.44867 * 2 1 3 29 29 H 1.09004 * 109.46652 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47001 * 299.93377 * 1 2 3 31 31 H 1.08991 * 109.47219 * 59.94399 * 1 2 3 32 32 H 1.09000 * 110.48522 * 98.37724 * 4 2 1 33 33 H 1.08995 * 110.48687 * 335.72965 * 4 2 1 34 34 H 1.08995 * 110.75873 * 279.62726 * 5 4 2 35 35 H 1.09006 * 110.75715 * 156.25344 * 5 4 2 36 36 H 1.09005 * 109.47106 * 171.75799 * 8 6 5 37 37 H 1.08999 * 109.47050 * 51.75947 * 8 6 5 38 38 H 1.09002 * 113.46793 * 321.93398 * 12 11 9 39 39 H 1.08999 * 113.46805 * 92.31765 * 12 11 9 40 40 H 1.08994 * 114.20514 * 220.37405 * 13 12 11 41 41 H 0.97007 * 120.00149 * 334.99370 * 14 13 12 42 42 H 1.09000 * 109.47360 * 299.99857 * 17 15 14 43 43 H 1.09008 * 109.46864 * 59.99557 * 17 15 14 44 44 H 0.97006 * 119.99770 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.47096 * 267.62545 * 27 11 9 46 46 H 1.09005 * 113.46966 * 38.00938 * 27 11 9 47 47 H 1.08998 * 110.16077 * 0.14926 * 28 2 1 48 48 H 1.08994 * 110.00520 * 238.64645 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 -1.2372 5 6 3.3145 -1.4993 -0.7200 6 6 2.8892 -1.9397 0.7027 7 1 2.2815 -2.8435 0.6566 8 6 4.1197 -2.1678 1.5829 9 6 4.8738 -3.3754 1.0889 10 8 4.4673 -3.9926 0.1272 11 7 6.0005 -3.7690 1.7151 12 6 6.9831 -4.8502 1.5468 13 6 7.2684 -4.7542 3.0520 14 7 6.3881 -5.5782 3.8840 15 6 6.8019 -5.9928 5.0977 16 8 7.9033 -5.6842 5.5010 17 6 5.8962 -6.8400 5.9539 18 16 6.7312 -7.2322 7.5111 19 6 5.4834 -8.2009 8.2918 20 1 4.5459 -8.3823 7.7872 21 6 5.7053 -8.7308 9.5553 22 7 6.8476 -8.5093 10.1706 23 14 4.3822 -9.7572 10.3832 24 1 3.2007 -9.8566 9.4889 25 1 4.9104 -11.1176 10.6578 26 1 3.9836 -9.1138 11.6609 27 6 6.7880 -3.3065 2.8678 28 6 2.0563 -0.7556 1.2355 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 2.3290 -0.0527 -2.0258 33 1 1.3148 -1.4659 -1.5967 34 1 4.1714 -0.8270 -0.6763 35 1 3.5338 -2.3663 -1.3434 36 1 3.8040 -2.3331 2.6130 37 1 4.7665 -1.2917 1.5372 38 1 6.5374 -5.7994 1.2492 39 1 7.8337 -4.5709 0.9251 40 1 8.3224 -4.8458 3.3138 41 1 5.5072 -5.8253 3.5614 42 1 4.9767 -6.2930 6.1620 43 1 5.6579 -7.7641 5.4269 44 1 7.0025 -8.8794 11.0538 45 1 7.5873 -2.6160 2.5986 46 1 6.1765 -2.9420 3.6933 47 1 1.2229 -1.1244 1.8334 48 1 2.6845 -0.0974 1.8355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530350295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:51 Heat of formation + Delta-G solvation = -79.604418 kcal Electronic energy + Delta-G solvation = -26482.746165 eV Core-core repulsion = 22663.251776 eV Total energy + Delta-G solvation = -3819.494389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82272 -40.49388 -39.56260 -38.47289 -34.76978 -34.57606 -33.58801 -31.49750 -30.62252 -29.64937 -27.84093 -27.61587 -26.91980 -25.05508 -23.08182 -21.86557 -21.28228 -20.29663 -19.94180 -19.80995 -18.24363 -17.87933 -17.25394 -17.17984 -16.87889 -16.73982 -16.39444 -16.04984 -15.85952 -15.72519 -14.94468 -14.74277 -14.39128 -14.35560 -14.19680 -14.08780 -13.97311 -13.77101 -13.40944 -13.23829 -13.15867 -12.97600 -12.91453 -12.67685 -12.60359 -12.07943 -11.99241 -11.71975 -11.66681 -11.63629 -11.56407 -11.48477 -11.23578 -11.15845 -11.03231 -10.76344 -10.27882 -10.17646 -9.78670 -8.65398 -8.35150 -6.12155 1.26005 1.40957 1.46060 1.54707 1.57237 1.60119 1.81536 2.17812 2.27338 2.99207 3.25675 3.30491 3.46959 3.64830 3.72985 3.81155 3.90618 3.92866 4.18808 4.25297 4.29085 4.34018 4.41853 4.51135 4.52504 4.56530 4.60114 4.61449 4.63273 4.70558 4.75707 4.77853 4.78234 4.83983 4.94623 5.03981 5.09901 5.15448 5.22933 5.33346 5.38061 5.42551 5.46081 5.52592 5.59951 6.19996 6.39291 6.68077 7.06895 7.12443 7.17383 8.74050 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.001960 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.583979 B =14280.991742 C =15696.686916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.059 0.941 8 C -0.122 4.122 9 C 0.537 3.463 10 O -0.579 6.579 11 N -0.652 5.652 12 C 0.099 3.901 13 C 0.102 3.898 14 N -0.697 5.697 15 C 0.544 3.456 16 O -0.554 6.554 17 C -0.133 4.133 18 S -0.142 6.142 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.909 5.909 23 Si 0.996 3.004 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.093 3.907 28 C -0.114 4.114 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.411 0.589 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.934 18.232 -22.255 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.094 4.094 7 H 0.077 0.923 8 C -0.162 4.162 9 C 0.328 3.672 10 O -0.459 6.459 11 N -0.387 5.387 12 C -0.025 4.025 13 C -0.004 4.004 14 N -0.350 5.350 15 C 0.331 3.669 16 O -0.431 6.431 17 C -0.285 4.285 18 S 0.085 5.915 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.818 3.182 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.030 4.030 28 C -0.151 4.151 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.247 0.753 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.145 0.855 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.434 18.474 -22.066 29.489 hybrid contribution -2.083 -1.360 0.015 2.488 sum -8.517 17.115 -22.051 29.184 Atomic orbital electron populations 1.21889 0.94832 1.01553 1.01982 1.21787 0.95892 0.99509 0.94269 0.90298 1.22446 0.96905 0.98802 0.97630 1.22496 0.97841 0.99124 0.95825 1.21701 0.94743 0.98359 0.94629 0.92285 1.21737 0.97162 0.95631 1.01621 1.20830 0.79258 0.85713 0.81352 1.90691 1.68454 1.57889 1.28884 1.49855 1.23187 1.32488 1.33219 1.23468 0.91989 0.91862 0.95143 1.22300 0.96461 0.91362 0.90297 1.45375 1.20069 1.53224 1.16285 1.19924 0.86532 0.78912 0.81577 1.90699 1.22585 1.57315 1.72478 1.23388 1.02548 1.02840 0.99681 1.85485 1.25650 1.67478 1.12850 1.23237 1.03338 1.37451 1.05499 0.90127 1.26083 0.98727 0.97345 0.96896 1.70172 1.25192 1.44326 1.14869 0.84940 0.77748 0.77474 0.78005 1.18265 1.19983 1.19848 1.23757 0.94861 0.96985 0.87423 1.22332 0.99275 0.96033 0.97498 0.93259 0.92192 0.92410 0.91177 0.92323 0.91368 0.93120 0.87734 0.86928 0.90739 0.85875 0.85647 0.75270 0.87358 0.87567 0.91964 0.85489 0.89482 0.91484 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.84 71.98 0.64 -0.93 16 2 C -0.10 -1.10 3.51 -9.99 -0.04 -1.14 16 3 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 4 C -0.12 -1.64 6.36 31.67 0.20 -1.44 16 5 C -0.12 -1.88 5.69 31.89 0.18 -1.70 16 6 C -0.08 -1.17 2.45 -9.72 -0.02 -1.19 16 7 H 0.06 1.19 7.96 -2.38 -0.02 1.17 16 8 C -0.12 -1.67 4.88 29.85 0.15 -1.53 16 9 C 0.54 10.69 7.88 87.66 0.69 11.38 16 10 O -0.58 -16.25 15.38 -3.04 -0.05 -16.30 16 11 N -0.65 -10.51 3.69 -857.65 -3.17 -13.68 16 12 C 0.10 1.45 8.38 83.18 0.70 2.14 16 13 C 0.10 1.75 4.62 45.49 0.21 1.96 16 14 N -0.70 -15.67 5.39 -441.61 -2.38 -18.05 16 15 C 0.54 18.17 7.85 87.66 0.69 18.86 16 16 O -0.55 -22.99 15.46 -3.02 -0.05 -23.04 16 17 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 18 S -0.14 -7.61 20.57 -56.49 -1.16 -8.77 16 19 C -0.55 -30.75 9.50 67.95 0.65 -30.10 16 20 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 21 C 0.01 0.81 5.49 84.86 0.47 1.28 16 22 N -0.91 -54.90 13.22 21.65 0.29 -54.61 16 23 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 C 0.09 1.16 8.24 83.23 0.69 1.85 16 28 C -0.11 -1.34 6.04 31.39 0.19 -1.15 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.88 7.85 -2.39 -0.02 0.86 16 34 H 0.07 0.99 8.00 -2.39 -0.02 0.97 16 35 H 0.05 1.09 7.17 -2.38 -0.02 1.08 16 36 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.11 1.10 8.06 -2.39 -0.02 1.08 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.13 2.33 7.45 -2.39 -0.02 2.32 16 41 H 0.41 7.89 8.76 -92.70 -0.81 7.08 16 42 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 43 H 0.11 3.68 8.14 -2.39 -0.02 3.67 16 44 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 45 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.07 0.80 7.68 -2.39 -0.02 0.79 16 48 H 0.08 0.73 7.84 -2.39 -0.02 0.71 16 Total: -1.00 -77.52 405.05 1.46 -76.06 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.13 Total: 19.50 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 5.82 Total: -6.31 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -5.26 Total: -86.34 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.09 Total: -39.34 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Total: -77.52 1.46 -76.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530350295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.544 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds