Wall clock time and date at job start Sat Apr 11 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.01798 * 2 1 4 4 C 1.54273 * 110.06872 * 121.41009 * 2 1 3 5 5 C 1.55039 * 104.27681 * 142.82625 * 4 2 1 6 6 C 1.54896 * 102.68108 * 322.23279 * 5 4 2 7 7 H 1.09001 * 110.48311 * 279.02612 * 6 5 4 8 8 C 1.50700 * 110.48121 * 156.51944 * 6 5 4 9 9 O 1.21279 * 119.99887 * 243.23637 * 8 6 5 10 10 N 1.34779 * 120.00040 * 63.24640 * 8 6 5 11 11 C 1.47066 * 136.05579 * 180.02562 * 10 8 6 12 12 C 1.53504 * 88.04678 * 207.05024 * 11 10 8 13 13 C 1.52998 * 114.20339 * 220.37609 * 12 11 10 14 14 N 1.46499 * 109.46697 * 185.00110 * 13 12 11 15 15 C 1.34778 * 119.99917 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00168 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99879 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47063 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99954 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00367 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99555 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00338 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99446 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47287 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47168 * 120.00002 * 23 21 19 26 26 H 1.48500 * 109.46828 * 239.99625 * 23 21 19 27 27 C 1.47064 * 136.05760 * 359.93929 * 10 8 6 28 28 C 1.53876 * 110.03549 * 238.59951 * 2 1 3 29 29 H 1.08999 * 109.47262 * 181.39739 * 1 2 3 30 30 H 1.09000 * 109.47312 * 301.40089 * 1 2 3 31 31 H 1.09003 * 109.46638 * 61.39722 * 1 2 3 32 32 H 1.08997 * 110.48602 * 261.59201 * 4 2 1 33 33 H 1.08999 * 110.48760 * 24.24454 * 4 2 1 34 34 H 1.09002 * 110.87001 * 203.90327 * 5 4 2 35 35 H 1.08999 * 110.70039 * 80.48391 * 5 4 2 36 36 H 1.09002 * 113.46793 * 321.85996 * 11 10 8 37 37 H 1.08999 * 113.46805 * 92.24363 * 11 10 8 38 38 H 1.09002 * 114.20460 * 87.54848 * 12 11 10 39 39 H 1.09003 * 109.47091 * 304.99597 * 13 12 11 40 40 H 1.08994 * 109.47769 * 65.00306 * 13 12 11 41 41 H 0.96999 * 120.00199 * 359.97438 * 14 13 12 42 42 H 1.09003 * 109.46940 * 299.99683 * 17 15 14 43 43 H 1.08997 * 109.47209 * 60.00155 * 17 15 14 44 44 H 0.96995 * 120.00025 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.47096 * 267.69948 * 27 10 8 46 46 H 1.09005 * 113.46966 * 38.08340 * 27 10 8 47 47 H 1.09003 * 110.02739 * 121.38326 * 28 2 1 48 48 H 1.09007 * 110.06850 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0593 -0.7552 1.2367 5 6 3.3151 -1.5031 0.7195 6 6 2.8884 -1.9397 -0.7041 7 1 2.2794 -2.8426 -0.6597 8 6 4.0998 -2.1643 -1.5720 9 8 4.2807 -1.4724 -2.5515 10 7 4.9819 -3.1343 -1.2599 11 6 6.2368 -3.6476 -1.8296 12 6 5.9097 -5.0051 -1.1919 13 6 7.1170 -5.7172 -0.5785 14 7 6.7140 -7.0452 -0.1092 15 6 7.6191 -7.8585 0.4703 16 8 8.7672 -7.4911 0.6030 17 6 7.2046 -9.2248 0.9525 18 16 8.6331 -10.0679 1.6770 19 6 7.8841 -11.5930 2.1435 20 1 6.8351 -11.7610 1.9496 21 6 8.6427 -12.5790 2.7592 22 7 9.9217 -12.3748 2.9941 23 14 7.8487 -14.1961 3.2530 24 1 6.4113 -14.1758 2.8811 25 1 8.5265 -15.3152 2.5506 26 1 7.9772 -14.3827 4.7207 27 6 5.1140 -4.1441 -0.1989 28 6 2.0571 -0.7532 -1.2339 29 1 -0.3634 -1.0273 0.0251 30 1 -0.3634 0.5354 0.8771 31 1 -0.3633 0.4920 -0.9023 32 1 2.3305 -0.0532 2.0252 33 1 1.3158 -1.4663 1.5967 34 1 3.5331 -2.3717 1.3408 35 1 4.1729 -0.8320 0.6768 36 1 6.2418 -3.6699 -2.9193 37 1 7.1272 -3.1761 -1.4137 38 1 5.2939 -5.6544 -1.8143 39 1 7.8992 -5.8196 -1.3306 40 1 7.4946 -5.1343 0.2615 41 1 5.7958 -7.3392 -0.2157 42 1 6.4224 -9.1228 1.7048 43 1 6.8270 -9.8075 0.1123 44 1 10.4516 -13.0637 3.4247 45 1 5.7057 -3.8054 0.6516 46 1 4.1640 -4.5879 0.0987 47 1 2.6861 -0.0945 -1.8328 48 1 1.2234 -1.1194 -1.8330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530696409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:54 Heat of formation + Delta-G solvation = -57.155080 kcal Electronic energy + Delta-G solvation = -26150.722712 eV Core-core repulsion = 22332.201799 eV Total energy + Delta-G solvation = -3818.520912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09034 -39.52930 -38.82255 -37.54375 -34.56639 -32.45506 -32.23949 -30.87848 -29.44943 -29.02290 -26.63955 -26.26974 -25.50530 -24.98981 -22.25921 -21.02399 -20.44787 -20.04710 -19.14663 -17.92596 -17.69518 -16.73219 -16.51143 -16.29346 -15.75572 -15.41890 -15.20957 -14.91762 -14.82930 -14.34452 -14.02255 -13.89040 -13.84555 -13.53548 -13.26190 -13.11842 -13.02491 -12.72458 -12.58981 -12.53582 -12.09731 -11.82532 -11.74824 -11.57616 -11.28689 -11.21024 -11.16907 -11.09495 -11.04814 -11.04040 -10.82655 -10.77942 -10.06170 -9.83298 -9.47361 -9.12656 -9.10584 -8.96846 -8.26347 -6.53025 -6.24482 -3.95161 2.24357 2.41045 2.96682 3.04012 3.19562 3.25596 3.29791 3.58142 3.88087 3.91261 4.01686 4.17682 4.17727 4.38833 4.45595 4.62489 4.77475 4.78356 4.82002 4.96114 4.97763 5.00937 5.04112 5.10896 5.11016 5.12437 5.15715 5.21496 5.30049 5.34817 5.43461 5.45782 5.53483 5.54917 5.58767 5.65636 5.70734 5.74452 5.84111 5.85861 5.91081 5.99267 6.10058 6.51886 7.31521 7.57223 7.62507 7.78877 8.32718 8.54807 9.21129 10.82987 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.001651 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.005848 B =16952.954303 C =17853.582271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.107 4.107 7 H 0.099 0.901 8 C 0.550 3.450 9 O -0.540 6.540 10 N -0.647 5.647 11 C 0.113 3.887 12 C -0.137 4.137 13 C 0.134 3.866 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.104 3.896 28 C -0.108 4.108 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.284 22.712 -6.491 29.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.128 4.128 7 H 0.117 0.883 8 C 0.340 3.660 9 O -0.416 6.416 10 N -0.383 5.383 11 C -0.011 4.011 12 C -0.156 4.156 13 C 0.009 3.991 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.019 4.019 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.263 23.834 -6.790 29.642 hybrid contribution -2.238 -1.679 0.152 2.802 sum -18.501 22.155 -6.638 29.618 Atomic orbital electron populations 1.21891 0.94822 1.01851 1.01686 1.21767 0.95826 0.99621 0.94459 0.90870 1.22476 0.96804 0.99051 0.97336 1.22507 0.98564 1.00472 0.93518 1.22103 0.94332 1.00933 0.95475 0.88256 1.20183 0.83366 0.77209 0.85254 1.90701 1.76459 1.45764 1.28725 1.49573 1.24153 1.34512 1.30036 1.22926 0.87456 0.90110 1.00570 1.23271 0.98016 0.95756 0.98560 1.21134 0.95275 0.83539 0.99153 1.45974 1.13378 1.16369 1.63682 1.20317 0.85223 0.86053 0.76606 1.90712 1.18802 1.75216 1.54314 1.23531 1.07138 0.95619 1.04141 1.85414 1.08221 1.14309 1.75486 1.22907 0.98416 1.01255 1.45812 0.90857 1.24995 0.94789 0.98740 0.95061 1.70024 1.05961 1.34294 1.39965 0.86117 0.79208 0.81858 0.78312 1.19623 1.20558 1.20567 1.23246 1.00692 0.85981 0.92016 1.22184 0.99089 0.95865 0.97457 0.92544 0.92678 0.92629 0.91261 0.91096 0.90738 0.91076 0.89956 0.89178 0.86946 0.90739 0.90954 0.76746 0.89195 0.89200 0.92213 0.89023 0.90020 0.89902 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.85 37.16 0.33 -0.39 16 2 C -0.10 -0.58 3.50 -89.50 -0.31 -0.89 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.63 6.36 -24.99 -0.16 -0.79 16 5 C -0.11 -0.67 6.00 -24.65 -0.15 -0.82 16 6 C -0.11 -0.77 3.09 -90.11 -0.28 -1.05 16 7 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 8 C 0.55 5.54 7.39 -10.98 -0.08 5.46 16 9 O -0.54 -7.56 16.21 5.56 0.09 -7.47 16 10 N -0.65 -5.28 3.67 -184.99 -0.68 -5.96 16 11 C 0.11 0.82 8.19 -8.50 -0.07 0.75 16 12 C -0.14 -0.84 4.11 -90.03 -0.37 -1.22 16 13 C 0.13 1.21 5.59 -4.04 -0.02 1.18 16 14 N -0.74 -8.22 5.56 -60.30 -0.33 -8.56 16 15 C 0.53 9.10 7.85 -10.98 -0.09 9.02 16 16 O -0.52 -11.07 15.86 5.56 0.09 -10.98 16 17 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 23 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.10 0.59 7.40 -8.43 -0.06 0.53 16 28 C -0.11 -0.80 5.82 -25.62 -0.15 -0.95 16 29 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.34 7.84 -51.93 -0.41 -0.07 16 34 H 0.07 0.37 7.85 -51.93 -0.41 -0.04 16 35 H 0.07 0.49 8.05 -51.93 -0.42 0.08 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 41 H 0.40 3.23 8.47 -40.82 -0.35 2.89 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 43 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 0.49 7.87 -51.93 -0.41 0.08 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.79 6.87 -51.93 -0.36 0.43 16 48 H 0.07 0.48 7.67 -51.93 -0.40 0.09 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -36.17 405.61 -10.40 -46.57 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.19 Total: -2.35 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -0.99 Total: -4.52 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.28 Total: -39.55 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.17 -10.40 -46.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530696409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.584 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds