Wall clock time and date at job start Sat Apr 11 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 110.01721 * 2 1 4 4 C 1.54266 * 110.03382 * 238.61540 * 2 1 3 5 5 C 1.54889 * 104.19925 * 217.10779 * 4 2 1 6 6 C 1.54891 * 102.74868 * 37.93480 * 5 4 2 7 7 H 1.09004 * 110.48367 * 80.87098 * 6 5 4 8 8 C 1.50699 * 110.48811 * 203.38266 * 6 5 4 9 9 O 1.21281 * 119.99747 * 118.55185 * 8 6 5 10 10 N 1.34776 * 119.99947 * 298.54737 * 8 6 5 11 11 C 1.47581 * 134.49408 * 179.97438 * 10 8 6 12 12 C 1.53941 * 86.11663 * 155.36291 * 11 10 8 13 13 C 1.52995 * 113.74438 * 137.95720 * 12 11 10 14 14 N 1.46499 * 109.47595 * 174.99613 * 13 12 11 15 15 C 1.34778 * 120.00278 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99753 * 23 21 19 25 25 H 1.48497 * 109.46782 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00030 * 23 21 19 27 27 C 1.47579 * 134.49193 * 0.02562 * 10 8 6 28 28 C 1.53873 * 110.03571 * 121.44649 * 2 1 3 29 29 H 1.08994 * 109.47647 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47250 * 299.93315 * 1 2 3 31 31 H 1.09002 * 109.47638 * 59.93198 * 1 2 3 32 32 H 1.08997 * 110.48982 * 98.42213 * 4 2 1 33 33 H 1.09003 * 110.59527 * 335.84152 * 4 2 1 34 34 H 1.09001 * 110.74988 * 279.62607 * 5 4 2 35 35 H 1.09000 * 110.91830 * 156.32581 * 5 4 2 36 36 H 1.08997 * 113.76460 * 41.05824 * 11 10 8 37 37 H 1.08994 * 113.77112 * 269.66359 * 11 10 8 38 38 H 1.09009 * 113.73976 * 269.15618 * 12 11 10 39 39 H 1.09008 * 109.47218 * 54.99444 * 13 12 11 40 40 H 1.09007 * 109.47175 * 294.99793 * 13 12 11 41 41 H 0.97000 * 119.99972 * 359.97438 * 14 13 12 42 42 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 43 43 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 44 44 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.76925 * 90.33940 * 27 10 8 46 46 H 1.08998 * 113.77107 * 318.94068 * 27 10 8 47 47 H 1.09008 * 110.02948 * 359.97438 * 28 2 1 48 48 H 1.09000 * 110.03199 * 238.56958 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0584 -0.7548 -1.2373 5 6 3.3136 -1.5004 -0.7200 6 6 2.8874 -1.9410 0.7025 7 1 2.2790 -2.8442 0.6558 8 6 4.0989 -2.1669 1.5698 9 8 4.2625 -1.4990 2.5689 10 7 5.0006 -3.1112 1.2353 11 6 6.2633 -3.5919 1.8288 12 6 5.9843 -4.9144 1.0921 13 6 7.2231 -5.5275 0.4361 14 7 6.8793 -6.8333 -0.1321 15 6 7.8203 -7.5619 -0.7646 16 8 8.9519 -7.1367 -0.8630 17 6 7.4665 -8.9049 -1.3496 18 16 8.9322 -9.6301 -2.1254 19 6 8.2512 -11.1474 -2.7074 20 1 7.2096 -11.3737 -2.5335 21 6 9.0519 -12.0490 -3.3948 22 7 10.3213 -11.7729 -3.6072 23 14 8.3280 -13.6541 -4.0186 24 1 7.2211 -13.3633 -4.9648 25 1 9.3822 -14.4352 -4.7141 26 1 7.8054 -14.4401 -2.8721 27 6 5.1220 -4.0791 0.1279 28 6 2.0571 -0.7542 1.2333 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8894 32 1 2.3296 -0.0525 -2.0255 33 1 1.3151 -1.4650 -1.5996 34 1 4.1709 -0.8287 -0.6757 35 1 3.5355 -2.3671 -1.3426 36 1 6.2330 -3.6791 2.9149 37 1 7.1469 -3.0657 1.4676 38 1 5.4158 -5.6338 1.6817 39 1 8.0065 -5.6515 1.1840 40 1 7.5784 -4.8686 -0.3563 41 1 5.9744 -7.1735 -0.0531 42 1 6.6831 -8.7806 -2.0972 43 1 7.1114 -9.5640 -0.5574 44 1 10.8808 -12.4032 -4.0873 45 1 5.6708 -3.6958 -0.7323 46 1 4.1803 -4.5554 -0.1445 47 1 1.2228 -1.1198 1.8321 48 1 2.6867 -0.0963 1.8323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530696410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:57 Heat of formation + Delta-G solvation = -60.771546 kcal Electronic energy + Delta-G solvation = -26193.536453 eV Core-core repulsion = 22374.858719 eV Total energy + Delta-G solvation = -3818.677734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99841 -39.48942 -38.76364 -37.51601 -34.54236 -32.45172 -32.22662 -30.83638 -29.43526 -28.99202 -26.80195 -26.24358 -25.49807 -24.96023 -22.21887 -20.95453 -20.42392 -20.03159 -19.14750 -17.92034 -17.69800 -16.74300 -16.50666 -16.28401 -15.75755 -15.40150 -15.19342 -14.91319 -14.82519 -14.30728 -14.01454 -13.86530 -13.84386 -13.51529 -13.25578 -13.11527 -13.04005 -12.70318 -12.58301 -12.50175 -12.08369 -11.82768 -11.71619 -11.55332 -11.30177 -11.21239 -11.19249 -11.13401 -11.07117 -11.05804 -10.83147 -10.79122 -10.01701 -9.84930 -9.46989 -9.10246 -9.08927 -8.96856 -8.27130 -6.52937 -6.23927 -3.94870 2.25825 2.41375 2.96539 3.04019 3.21571 3.25324 3.28091 3.59296 3.88273 3.95131 4.02192 4.18198 4.18432 4.40513 4.45158 4.62614 4.78293 4.79483 4.82966 4.95530 4.98509 5.01771 5.05008 5.11185 5.12008 5.12613 5.16366 5.20888 5.31957 5.36370 5.44556 5.46422 5.53836 5.55667 5.60126 5.66212 5.71387 5.75487 5.84090 5.85871 5.91923 5.99965 6.09898 6.51855 7.29439 7.56744 7.62444 7.80745 8.32497 8.54824 9.21310 10.83397 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.001671 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.026939 B =16749.382567 C =17677.865726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.108 4.108 7 H 0.099 0.901 8 C 0.543 3.457 9 O -0.541 6.541 10 N -0.645 5.645 11 C 0.116 3.884 12 C -0.135 4.135 13 C 0.131 3.869 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.106 3.894 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.178 21.148 7.913 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.129 4.129 7 H 0.117 0.883 8 C 0.333 3.667 9 O -0.418 6.418 10 N -0.381 5.381 11 C -0.007 4.007 12 C -0.154 4.154 13 C 0.006 3.994 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.017 4.017 28 C -0.145 4.145 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.170 22.340 8.270 29.364 hybrid contribution -2.198 -1.755 -0.287 2.827 sum -19.368 20.584 7.983 29.369 Atomic orbital electron populations 1.21889 0.94841 1.01843 1.01672 1.21767 0.95822 0.99614 0.94480 0.90882 1.22444 0.96819 0.99081 0.97319 1.22486 0.98544 1.00484 0.93597 1.22107 0.94456 1.00877 0.95493 0.88252 1.20303 0.83600 0.77275 0.85543 1.90698 1.77172 1.46318 1.27612 1.49983 1.23266 1.36736 1.28077 1.23127 0.86950 0.90552 1.00034 1.23439 0.97320 0.96710 0.97916 1.21212 0.95586 0.84680 0.97949 1.45978 1.13719 1.19836 1.59883 1.20317 0.84765 0.85968 0.77157 1.90712 1.20350 1.71184 1.56800 1.23531 1.07444 0.95872 1.03598 1.85408 1.07951 1.19793 1.70198 1.22826 0.98915 1.04442 1.42344 0.90966 1.24992 0.94701 0.98565 0.95283 1.70009 1.05180 1.36264 1.38791 0.86227 0.78662 0.81679 0.78947 1.19941 1.20801 1.19945 1.23428 1.00217 0.86762 0.91297 1.22172 0.99096 0.95852 0.97410 0.92552 0.92655 0.92673 0.91290 0.91093 0.91096 0.90754 0.89597 0.89148 0.87178 0.90816 0.90997 0.76771 0.89203 0.89208 0.92108 0.88963 0.89659 0.91256 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.84 37.15 0.33 -0.40 16 2 C -0.10 -0.58 3.50 -89.51 -0.31 -0.90 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.63 6.36 -25.07 -0.16 -0.79 16 5 C -0.11 -0.68 5.84 -24.74 -0.14 -0.82 16 6 C -0.11 -0.78 3.06 -90.11 -0.28 -1.06 16 7 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 8 C 0.54 5.47 7.38 -10.99 -0.08 5.39 16 9 O -0.54 -7.58 16.18 5.56 0.09 -7.49 16 10 N -0.64 -5.23 3.58 -178.36 -0.64 -5.87 16 11 C 0.12 0.84 8.40 -2.98 -0.03 0.82 16 12 C -0.13 -0.83 3.94 -89.68 -0.35 -1.18 16 13 C 0.13 1.18 5.53 -4.04 -0.02 1.16 16 14 N -0.74 -8.21 5.56 -60.29 -0.33 -8.55 16 15 C 0.53 9.11 7.85 -10.99 -0.09 9.02 16 16 O -0.52 -11.09 15.86 5.56 0.09 -11.00 16 17 C -0.15 -2.92 6.16 36.00 0.22 -2.69 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.11 0.60 7.22 -2.96 -0.02 0.58 16 28 C -0.11 -0.80 5.81 -25.61 -0.15 -0.95 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 7.86 -51.93 -0.41 -0.07 16 34 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.07 0.37 7.62 -51.93 -0.40 -0.02 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.07 0.70 7.84 -51.92 -0.41 0.29 16 41 H 0.40 3.21 8.47 -40.82 -0.35 2.87 16 42 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 43 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 0.50 7.89 -51.93 -0.41 0.09 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.49 7.67 -51.92 -0.40 0.09 16 48 H 0.08 0.79 6.90 -51.93 -0.36 0.43 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -36.17 404.94 -10.26 -46.42 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.18 Total: -2.25 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.88 Total: -4.53 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.24 Total: -39.45 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.18 Total: -18.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.17 -10.26 -46.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530696410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.348 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds