Wall clock time and date at job start Sat Apr 11 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.01887 * 2 1 4 4 C 1.53879 * 110.07527 * 121.42018 * 2 1 3 5 5 C 1.54255 * 106.59789 * 119.30750 * 4 2 1 6 6 C 1.54889 * 104.19940 * 23.60923 * 5 4 2 7 7 H 1.08996 * 110.91172 * 80.44510 * 6 5 4 8 8 C 1.50706 * 110.75645 * 203.74286 * 6 5 4 9 9 O 1.21273 * 119.99782 * 113.32649 * 8 6 5 10 10 N 1.34777 * 119.99957 * 293.33102 * 8 6 5 11 11 C 1.47574 * 134.49055 * 179.97438 * 10 8 6 12 12 C 1.53947 * 86.11920 * 155.35717 * 11 10 8 13 13 C 1.52997 * 113.74563 * 137.95277 * 12 11 10 14 14 N 1.46505 * 109.47212 * 176.92618 * 13 12 11 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00597 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99622 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47156 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00151 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99845 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00054 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00100 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00024 * 23 21 19 25 25 H 1.48506 * 109.46989 * 210.00023 * 23 21 19 26 26 H 1.48506 * 109.47313 * 329.99924 * 23 21 19 27 27 C 1.47815 * 134.45609 * 359.86173 * 10 8 6 28 28 C 1.54270 * 110.03289 * 238.61147 * 2 1 3 29 29 H 1.08995 * 109.46802 * 181.39248 * 1 2 3 30 30 H 1.09000 * 109.46931 * 301.39205 * 1 2 3 31 31 H 1.08997 * 109.47073 * 61.38761 * 1 2 3 32 32 H 1.09005 * 110.02667 * 238.59510 * 4 2 1 33 33 H 1.09000 * 110.03027 * 359.96839 * 4 2 1 34 34 H 1.09004 * 110.48542 * 264.92602 * 5 4 2 35 35 H 1.09001 * 110.48772 * 142.29465 * 5 4 2 36 36 H 1.09003 * 113.77298 * 41.05941 * 11 10 8 37 37 H 1.08996 * 113.77286 * 269.65344 * 11 10 8 38 38 H 1.09005 * 113.74259 * 269.15696 * 12 11 10 39 39 H 1.09002 * 109.47153 * 56.92611 * 13 12 11 40 40 H 1.09001 * 109.46832 * 296.92801 * 13 12 11 41 41 H 0.96996 * 119.99606 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.47380 * 300.00190 * 17 15 14 43 43 H 1.09002 * 109.47060 * 60.00278 * 17 15 14 44 44 H 0.96999 * 120.00126 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.76749 * 90.38615 * 27 10 8 46 46 H 1.08998 * 113.83625 * 318.92401 * 27 10 8 47 47 H 1.08995 * 110.48786 * 98.37667 * 28 2 1 48 48 H 1.09001 * 110.59229 * 335.78731 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0582 -0.7534 1.2334 5 6 2.8891 -1.9398 0.7026 6 6 3.3144 -1.4993 -0.7202 7 1 4.1720 -0.8279 -0.6795 8 6 3.6174 -2.6979 -1.5821 9 8 2.9086 -2.9568 -2.5314 10 7 4.6761 -3.4820 -1.2977 11 6 5.2552 -4.6971 -1.9027 12 6 6.5834 -4.2572 -1.2606 13 6 7.3722 -5.4057 -0.6283 14 7 8.6461 -4.8977 -0.1130 15 6 9.5111 -5.7364 0.4909 16 8 9.2352 -6.9116 0.6075 17 6 10.8218 -5.2140 1.0204 18 16 11.7548 -6.5726 1.7686 19 6 13.1966 -5.7036 2.2888 20 1 13.2841 -4.6432 2.1039 21 6 14.2205 -6.3822 2.9352 22 7 14.1145 -7.6750 3.1591 23 14 15.7493 -5.4611 3.4860 24 1 15.5502 -4.9524 4.8669 25 1 16.9165 -6.3790 3.4601 26 1 15.9969 -4.3196 2.5689 27 6 5.7243 -3.4683 -0.2556 28 6 2.0585 -0.7549 -1.2373 29 1 -0.3633 -1.0273 0.0250 30 1 -0.3633 0.5353 0.8772 31 1 -0.3633 0.4921 -0.9021 32 1 2.6876 -0.0948 1.8319 33 1 1.2245 -1.1190 1.8329 34 1 2.2794 -2.8422 0.6564 35 1 3.7657 -2.1024 1.3297 36 1 5.2680 -4.6821 -2.9925 37 1 4.8556 -5.6249 -1.4935 38 1 7.1950 -3.6263 -1.9057 39 1 7.5637 -6.1719 -1.3795 40 1 6.7947 -5.8356 0.1901 41 1 8.8665 -3.9577 -0.2060 42 1 11.3993 -4.7847 0.2016 43 1 10.6306 -4.4473 1.7712 44 1 14.8299 -8.1491 3.6112 45 1 5.4626 -4.0347 0.6382 46 1 6.1107 -2.4739 -0.0325 47 1 2.3289 -0.0527 -2.0258 48 1 1.3155 -1.4658 -1.5989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530696411.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:00 Heat of formation + Delta-G solvation = -61.291771 kcal Electronic energy + Delta-G solvation = -26172.356998 eV Core-core repulsion = 22353.656705 eV Total energy + Delta-G solvation = -3818.700293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96405 -39.48363 -38.76281 -37.51574 -34.53580 -32.45464 -32.21065 -30.83825 -29.42860 -28.99732 -26.79583 -26.25518 -25.50564 -24.99241 -22.28433 -20.91972 -20.25419 -20.07090 -19.22323 -17.89870 -17.51396 -16.69442 -16.43170 -16.39345 -16.22568 -15.34021 -15.26120 -14.82808 -14.55306 -14.38301 -14.04025 -13.85082 -13.79864 -13.36959 -13.29536 -13.12010 -13.04552 -12.78124 -12.60407 -12.48491 -12.15080 -11.83008 -11.70360 -11.52707 -11.35833 -11.27430 -11.16377 -11.08650 -11.06018 -11.04993 -10.84004 -10.78533 -10.01324 -9.84185 -9.46979 -9.10131 -9.09646 -8.97040 -8.26820 -6.53056 -6.24254 -3.95120 2.26182 2.40975 2.96299 3.04000 3.20323 3.25381 3.29008 3.59081 3.86946 3.96228 4.01784 4.17885 4.19067 4.40832 4.47087 4.63845 4.78420 4.79069 4.81425 4.91246 4.96651 5.03437 5.05837 5.11011 5.12171 5.12598 5.17833 5.21199 5.33124 5.35276 5.43366 5.46564 5.54239 5.56861 5.58783 5.66519 5.71810 5.80844 5.84014 5.84578 5.85924 6.01645 6.09843 6.51664 7.29367 7.56869 7.62465 7.81353 8.32502 8.54800 9.21165 10.83146 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.001654 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.759060 B =16928.206814 C =17783.482728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.110 4.110 7 H 0.100 0.900 8 C 0.544 3.456 9 O -0.541 6.541 10 N -0.646 5.646 11 C 0.117 3.883 12 C -0.135 4.135 13 C 0.131 3.869 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.106 3.894 28 C -0.101 4.101 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.812 16.281 -7.153 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.132 4.132 7 H 0.118 0.882 8 C 0.334 3.666 9 O -0.418 6.418 10 N -0.381 5.381 11 C -0.006 4.006 12 C -0.154 4.154 13 C 0.006 3.994 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.017 4.017 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.772 14.134 -7.446 29.476 hybrid contribution 1.501 2.399 0.234 2.839 sum -23.272 16.532 -7.212 29.443 Atomic orbital electron populations 1.21878 0.94776 1.01939 1.01644 1.21768 0.96023 0.99414 0.94496 0.90885 1.22226 0.99542 0.96606 0.97395 1.22308 1.00116 0.98821 0.93612 1.22260 1.00380 0.94933 0.95583 0.88192 1.20275 0.77867 0.83654 0.84837 1.90703 1.47755 1.73071 1.30242 1.50059 1.28101 1.28057 1.31928 1.23117 0.88721 0.88646 1.00142 1.23434 0.95726 0.98002 0.98230 1.21209 0.84445 0.95131 0.98641 1.45970 1.19028 1.12398 1.62010 1.20316 0.84924 0.86122 0.76844 1.90713 1.76446 1.16458 1.55425 1.23531 0.96489 1.06511 1.03904 1.85413 1.16622 1.08237 1.73124 1.22866 1.04032 0.97187 1.44380 0.90914 1.24989 0.98393 0.95004 0.95164 1.70015 1.33347 1.07465 1.39419 0.86172 0.81059 0.79273 0.79007 1.20269 1.20739 1.19705 1.23457 0.84464 1.01327 0.92453 1.22337 0.95819 0.98752 0.96986 0.92520 0.92665 0.92620 0.91447 0.91258 0.91239 0.90904 0.89595 0.89158 0.87195 0.90813 0.91012 0.76771 0.89205 0.89203 0.92160 0.88957 0.89634 0.91311 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 8.84 37.16 0.33 -0.46 16 2 C -0.10 -0.57 3.50 -89.50 -0.31 -0.88 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.12 -0.65 6.46 -25.62 -0.17 -0.81 16 5 C -0.11 -0.68 6.08 -25.08 -0.15 -0.83 16 6 C -0.11 -0.80 3.05 -89.78 -0.27 -1.07 16 7 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 8 C 0.54 5.49 7.36 -10.98 -0.08 5.41 16 9 O -0.54 -7.59 16.45 5.56 0.09 -7.50 16 10 N -0.65 -5.26 3.61 -178.13 -0.64 -5.90 16 11 C 0.12 0.85 8.41 -2.97 -0.02 0.82 16 12 C -0.13 -0.83 3.93 -89.68 -0.35 -1.18 16 13 C 0.13 1.18 5.51 -4.04 -0.02 1.16 16 14 N -0.74 -8.21 5.56 -60.29 -0.33 -8.54 16 15 C 0.53 9.11 7.85 -10.99 -0.09 9.02 16 16 O -0.52 -11.09 15.86 5.56 0.09 -11.00 16 17 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -14.96 9.50 30.94 0.29 -14.66 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 23 Si 0.92 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 C 0.11 0.60 7.85 -2.82 -0.02 0.58 16 28 C -0.10 -0.75 5.44 -25.07 -0.14 -0.89 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.36 7.67 -51.93 -0.40 -0.03 16 34 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 35 H 0.07 0.38 7.99 -51.93 -0.42 -0.04 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 41 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 42 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.09 0.50 7.92 -51.93 -0.41 0.09 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.75 7.15 -51.93 -0.37 0.38 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -36.22 406.75 -10.28 -46.50 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.23 Total: -2.33 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.88 Total: -4.51 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.24 Total: -39.48 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.18 Total: -18.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.22 -10.28 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530696411.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.791 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds