Wall clock time and date at job start Sat Apr 11 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.01223 * 2 1 4 4 C 1.53869 * 110.03576 * 238.60738 * 2 1 3 5 5 C 1.54270 * 106.63967 * 240.64009 * 4 2 1 6 6 C 1.54961 * 104.16191 * 336.44607 * 5 4 2 7 7 H 1.09003 * 110.87878 * 279.50598 * 6 5 4 8 8 C 1.50691 * 110.76737 * 156.22174 * 6 5 4 9 9 O 1.21286 * 120.00068 * 246.63497 * 8 6 5 10 10 N 1.34781 * 120.00205 * 66.63249 * 8 6 5 11 11 C 1.47071 * 136.05323 * 359.62702 * 10 8 6 12 12 C 1.53237 * 88.07989 * 207.20558 * 11 10 8 13 13 C 1.52998 * 114.50410 * 220.45523 * 12 11 10 14 14 N 1.46502 * 109.47462 * 268.85018 * 13 12 11 15 15 C 1.34777 * 120.00035 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99637 * 179.97438 * 15 14 13 18 18 S 1.81008 * 109.46826 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99810 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99694 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99770 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46955 * 60.00030 * 23 21 19 25 25 H 1.48504 * 109.46751 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46955 * 299.99790 * 23 21 19 27 27 C 1.47063 * 136.06190 * 180.02562 * 10 8 6 28 28 C 1.54268 * 110.07209 * 121.41176 * 2 1 3 29 29 H 1.09007 * 109.46706 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47453 * 299.93470 * 1 2 3 31 31 H 1.08994 * 109.47131 * 59.94391 * 1 2 3 32 32 H 1.09002 * 110.03268 * 359.95096 * 4 2 1 33 33 H 1.08995 * 110.03391 * 121.33402 * 4 2 1 34 34 H 1.08997 * 110.48585 * 95.09409 * 5 4 2 35 35 H 1.09002 * 110.48442 * 217.73292 * 5 4 2 36 36 H 1.08998 * 113.46666 * 321.93656 * 11 10 8 37 37 H 1.08994 * 113.46384 * 92.37915 * 11 10 8 38 38 H 1.09000 * 114.01563 * 87.71963 * 12 11 10 39 39 H 1.08997 * 109.47063 * 28.85022 * 13 12 11 40 40 H 1.09002 * 109.47309 * 148.84753 * 13 12 11 41 41 H 0.96994 * 119.99927 * 359.97438 * 14 13 12 42 42 H 1.09000 * 109.47617 * 299.99560 * 17 15 14 43 43 H 1.08997 * 109.47337 * 60.00469 * 17 15 14 44 44 H 0.97000 * 120.00478 * 180.02562 * 22 21 19 45 45 H 1.08993 * 113.46960 * 267.62661 * 27 10 8 46 46 H 1.09011 * 113.46418 * 38.06221 * 27 10 8 47 47 H 1.08997 * 110.48788 * 261.59881 * 28 2 1 48 48 H 1.09000 * 110.48806 * 24.11180 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0572 -0.7530 -1.2340 5 6 2.8894 -1.9395 -0.7052 6 6 3.3151 -1.4995 0.7183 7 1 4.1726 -0.8279 0.6772 8 6 3.6188 -2.6982 1.5796 9 8 2.9107 -2.9575 2.5295 10 7 4.6774 -3.4822 1.2943 11 6 5.7304 -3.5073 0.2679 12 6 5.8174 -5.0241 0.4677 13 6 7.2407 -5.5852 0.4551 14 7 7.6000 -5.9747 -0.9107 15 6 8.8156 -6.4987 -1.1643 16 8 9.6118 -6.6482 -0.2617 17 6 9.1850 -6.8998 -2.5692 18 16 10.8683 -7.5649 -2.5838 19 6 11.0338 -7.9411 -4.2972 20 1 10.2166 -7.7430 -4.9749 21 6 12.2140 -8.4931 -4.7757 22 7 13.2098 -8.7350 -3.9497 23 14 12.3891 -8.8926 -6.5921 24 1 12.2242 -7.6511 -7.3900 25 1 13.7347 -9.4679 -6.8448 26 1 11.3480 -9.8758 -6.9852 27 6 5.2836 -4.6930 1.8680 28 6 2.0595 -0.7552 1.2366 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5128 0.8906 31 1 -0.3633 0.5147 -0.8894 32 1 1.2230 -1.1192 -1.8324 33 1 2.6854 -0.0941 -1.8333 34 1 2.2802 -2.8422 -0.6592 35 1 3.7654 -2.1010 -1.3335 36 1 5.3777 -3.2210 -0.7229 37 1 6.6364 -2.9779 0.5627 38 1 5.1242 -5.5935 -0.1515 39 1 7.9347 -4.8235 0.8102 40 1 7.2933 -6.4570 1.1073 41 1 6.9629 -5.8561 -1.6324 42 1 8.4907 -7.6615 -2.9240 43 1 9.1327 -6.0282 -3.2216 44 1 14.0347 -9.1204 -4.2841 45 1 6.0693 -4.4830 2.5937 46 1 4.5517 -5.4128 2.2348 47 1 2.3305 -0.0532 2.0252 48 1 1.3150 -1.4646 1.5980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530696412.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:02 Heat of formation + Delta-G solvation = -57.134896 kcal Electronic energy + Delta-G solvation = -26188.037649 eV Core-core repulsion = 22369.517612 eV Total energy + Delta-G solvation = -3818.520037 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09289 -39.51860 -38.82361 -37.56231 -34.56379 -32.45242 -32.22898 -30.88880 -29.45395 -29.02593 -26.66238 -26.27138 -25.50394 -25.02701 -22.25024 -21.09720 -20.32332 -20.07829 -19.15730 -17.93346 -17.44851 -16.71502 -16.43337 -16.40880 -16.25342 -15.35465 -15.28702 -14.82558 -14.51548 -14.40934 -14.11264 -13.98874 -13.62384 -13.46053 -13.36453 -13.12340 -12.99177 -12.73384 -12.61651 -12.48175 -12.22741 -11.83142 -11.78101 -11.51958 -11.36874 -11.24124 -11.11244 -11.07052 -11.05865 -10.98242 -10.82992 -10.78883 -10.06705 -9.84926 -9.47312 -9.11811 -9.08897 -8.96714 -8.27008 -6.52836 -6.23774 -3.94760 2.24712 2.40340 2.96741 3.04052 3.21672 3.25367 3.28121 3.58123 3.87068 3.92651 3.99982 4.18111 4.18440 4.39677 4.47472 4.63519 4.75669 4.79203 4.80373 4.89867 4.93706 5.02275 5.06616 5.11071 5.11377 5.12785 5.17359 5.21999 5.29433 5.34927 5.41533 5.45790 5.54215 5.55861 5.58783 5.66163 5.71120 5.79748 5.83562 5.84263 5.85969 6.00583 6.10074 6.51885 7.31635 7.56839 7.62528 7.79144 8.32599 8.54854 9.21434 10.83550 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.001686 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.235486 B =16603.800524 C =17792.719213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.110 4.110 7 H 0.101 0.899 8 C 0.551 3.449 9 O -0.539 6.539 10 N -0.648 5.648 11 C 0.102 3.898 12 C -0.137 4.137 13 C 0.134 3.866 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.113 3.887 28 C -0.101 4.101 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.918 16.677 6.805 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.131 4.131 7 H 0.119 0.881 8 C 0.341 3.659 9 O -0.416 6.416 10 N -0.383 5.383 11 C -0.021 4.021 12 C -0.156 4.156 13 C 0.009 3.991 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.010 4.010 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.980 16.378 8.925 29.597 hybrid contribution -0.974 0.013 -2.561 2.740 sum -23.954 16.391 6.364 29.715 Atomic orbital electron populations 1.21881 0.94756 1.01958 1.01646 1.21765 0.96034 0.99425 0.94479 0.90878 1.22230 0.99547 0.96613 0.97407 1.22339 1.00063 0.98858 0.93601 1.22279 1.00444 0.94741 0.95621 0.88127 1.20156 0.78626 0.82585 0.84528 1.90712 1.48830 1.71928 1.30133 1.49577 1.26730 1.29407 1.32627 1.23195 0.90485 0.95435 0.92954 1.23185 0.97783 0.96082 0.98538 1.21132 0.92753 1.00342 0.84871 1.45972 1.16900 1.66742 1.09785 1.20318 0.80799 0.76199 0.90886 1.90714 1.49253 1.52394 1.46685 1.23531 1.07223 1.04452 0.95233 1.85410 1.05989 1.79847 1.12112 1.22825 1.03545 1.48798 0.93365 0.90964 1.24986 0.94782 0.94859 0.98896 1.70000 1.04454 1.40861 1.34931 0.86230 0.77528 0.78761 0.83012 1.19945 1.20801 1.19941 1.22925 0.96538 0.85892 0.95691 1.22340 0.95778 0.98760 0.97014 0.92506 0.92629 0.92644 0.91241 0.91447 0.91157 0.90892 0.89941 0.89039 0.87000 0.90958 0.90726 0.76755 0.89201 0.89197 0.92103 0.89152 0.89956 0.91291 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.84 37.16 0.33 -0.45 16 2 C -0.10 -0.56 3.50 -89.50 -0.31 -0.87 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -0.63 6.45 -25.61 -0.17 -0.79 16 5 C -0.11 -0.65 6.11 -25.03 -0.15 -0.80 16 6 C -0.11 -0.79 3.12 -89.74 -0.28 -1.07 16 7 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 8 C 0.55 5.56 7.38 -10.99 -0.08 5.48 16 9 O -0.54 -7.56 16.50 5.55 0.09 -7.47 16 10 N -0.65 -5.31 3.69 -185.40 -0.68 -5.99 16 11 C 0.10 0.59 7.92 -8.64 -0.07 0.52 16 12 C -0.14 -0.84 4.07 -90.25 -0.37 -1.21 16 13 C 0.13 1.21 5.60 -4.04 -0.02 1.19 16 14 N -0.74 -8.22 5.56 -60.29 -0.33 -8.56 16 15 C 0.53 9.11 7.85 -10.99 -0.09 9.02 16 16 O -0.52 -11.08 15.86 5.55 0.09 -10.99 16 17 C -0.15 -2.92 6.16 36.00 0.22 -2.69 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.11 0.82 8.20 -8.52 -0.07 0.75 16 28 C -0.10 -0.74 5.44 -25.07 -0.14 -0.88 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 35 H 0.07 0.35 6.89 -51.93 -0.36 -0.01 16 36 H 0.08 0.37 6.78 -51.93 -0.35 0.02 16 37 H 0.09 0.50 7.89 -51.93 -0.41 0.09 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 3.22 8.47 -40.82 -0.35 2.88 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 46 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.74 7.15 -51.93 -0.37 0.37 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -36.14 404.55 -10.34 -46.48 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.10 Total: -2.23 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.00 Total: -4.48 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.29 Total: -39.59 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.18 Total: -18.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.14 -10.34 -46.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530696412.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.658 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds