Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 115.54967 * 2 1 4 4 C 1.53003 * 117.51613 * 145.70223 * 2 1 3 5 5 C 1.52998 * 117.49845 * 214.32936 * 2 1 3 6 6 H 1.08999 * 117.49922 * 0.02562 * 5 2 1 7 7 C 1.50699 * 117.49749 * 144.99494 * 5 2 1 8 8 O 1.21281 * 120.00277 * 0.02562 * 7 5 2 9 9 N 1.34785 * 120.00323 * 180.02562 * 7 5 2 10 10 C 1.46494 * 120.00125 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.46987 * 299.99898 * 11 10 9 13 13 N 1.46500 * 109.46998 * 59.99865 * 11 10 9 14 14 C 1.34778 * 120.00058 * 53.97544 * 13 11 10 15 15 O 1.21275 * 120.00035 * 5.26841 * 14 13 11 16 16 C 1.50702 * 120.00029 * 185.27300 * 14 13 11 17 17 S 1.80996 * 109.47101 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00053 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00168 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00345 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99706 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00298 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46994 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46902 * 120.00003 * 22 20 18 25 25 H 1.48497 * 109.47191 * 240.00285 * 22 20 18 26 26 C 1.52996 * 109.47532 * 179.97438 * 11 10 9 27 27 C 1.53001 * 117.50251 * 243.12640 * 26 11 10 28 28 C 1.52998 * 117.50328 * 174.46158 * 26 11 10 29 29 H 1.09005 * 109.46880 * 205.66782 * 1 2 3 30 30 H 1.08995 * 109.47250 * 325.66557 * 1 2 3 31 31 H 1.08992 * 109.47266 * 85.67075 * 1 2 3 32 32 H 1.08996 * 117.50232 * 359.97438 * 4 2 1 33 33 H 1.09002 * 117.49768 * 214.96547 * 4 2 1 34 34 H 0.97002 * 119.99619 * 0.02562 * 9 7 5 35 35 H 1.09001 * 109.47403 * 60.00030 * 10 9 7 36 36 H 1.09005 * 109.46958 * 299.99971 * 10 9 7 37 37 H 1.08991 * 109.47676 * 299.99936 * 12 11 10 38 38 H 1.09008 * 109.47245 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.47564 * 60.00354 * 12 11 10 40 40 H 0.96998 * 120.00008 * 233.97062 * 13 11 10 41 41 H 1.09003 * 109.47037 * 300.00185 * 16 14 13 42 42 H 1.09003 * 109.47277 * 59.99764 * 16 14 13 43 43 H 0.97000 * 120.00176 * 179.97438 * 21 20 18 44 44 H 1.09005 * 115.54989 * 28.79023 * 26 11 10 45 45 H 1.08995 * 117.49718 * 359.97438 * 27 26 11 46 46 H 1.08994 * 117.50237 * 145.02105 * 27 26 11 47 47 H 1.08999 * 117.50144 * 214.98158 * 28 26 11 48 48 H 1.08998 * 117.49818 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 0.7646 5 6 2.2364 -1.1207 -0.7653 6 1 1.6112 -1.8578 -1.2692 7 6 3.5289 -0.7805 -1.4615 8 8 3.9715 0.3471 -1.4016 9 7 4.1932 -1.7292 -2.1509 10 6 5.4499 -1.3986 -2.8272 11 6 5.9935 -2.6438 -3.5306 12 6 6.2444 -3.7443 -2.4978 13 7 5.0170 -3.1130 -4.5168 14 6 4.5485 -2.2677 -5.4561 15 8 5.0045 -1.1475 -5.5457 16 6 3.4577 -2.7144 -6.3952 17 16 3.0485 -1.3651 -7.5300 18 6 1.7865 -2.1402 -8.4845 19 1 1.4959 -3.1582 -8.2706 20 6 1.1649 -1.4421 -9.5107 21 7 1.5186 -0.2013 -9.7711 22 14 -0.1726 -2.2641 -10.5230 23 1 -0.3822 -3.6504 -10.0338 24 1 -1.4367 -1.4962 -10.3898 25 1 0.2374 -2.2989 -11.9499 26 6 7.3057 -2.2984 -4.2375 27 6 7.3407 -2.4219 -5.7621 28 6 8.0777 -3.4447 -4.8938 29 1 -0.3633 -0.9263 0.4452 30 1 -0.3633 0.8486 0.5796 31 1 -0.3633 0.0776 -1.0246 32 1 1.6120 -1.8585 1.2682 33 1 3.1721 -0.8751 1.2676 34 1 3.8391 -2.6310 -2.1992 35 1 6.1763 -1.0490 -2.0936 36 1 5.2710 -0.6148 -3.5634 37 1 6.9709 -3.3952 -1.7641 38 1 6.6313 -4.6316 -2.9990 39 1 5.3094 -3.9904 -1.9946 40 1 4.7078 -4.0321 -4.4937 41 1 3.8002 -3.5780 -6.9653 42 1 2.5723 -2.9864 -5.8205 43 1 1.0845 0.2865 -10.4884 44 1 7.8866 -1.4950 -3.7843 45 1 6.4290 -2.7497 -6.2615 46 1 7.9449 -1.7002 -6.3118 47 1 9.1664 -3.3954 -4.8727 48 1 7.6510 -4.4451 -4.8216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531675989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = -21.012597 kcal Electronic energy + Delta-G solvation = -27977.052864 eV Core-core repulsion = 24160.099207 eV Total energy + Delta-G solvation = -3816.953657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77106 -39.72169 -37.32927 -36.85561 -35.16018 -33.42012 -32.44230 -31.28539 -29.02181 -28.65591 -27.15362 -25.49879 -24.39747 -22.47791 -22.18374 -21.13588 -20.86444 -20.11551 -19.24264 -17.87869 -17.68367 -16.43645 -16.42464 -16.05006 -15.47796 -15.13659 -14.82167 -14.68821 -14.42557 -14.31028 -13.99235 -13.69841 -13.39535 -13.26231 -13.02543 -12.87475 -12.75751 -12.61714 -12.41179 -12.21502 -12.03943 -11.61998 -11.56662 -11.37119 -11.13809 -11.07919 -11.03014 -10.77434 -10.54626 -10.33404 -10.24548 -10.11093 -9.82185 -9.78712 -9.34943 -9.09300 -8.99371 -8.81803 -8.23887 -6.50691 -6.23091 -3.93402 2.51009 2.93835 3.05377 3.10907 3.20090 3.26440 3.30428 3.63002 3.66594 3.86206 4.18783 4.49780 4.53401 4.58571 4.61428 4.67897 4.69945 5.03438 5.05692 5.10512 5.12255 5.14505 5.19626 5.23824 5.40623 5.47037 5.49410 5.53108 5.56576 5.60764 5.63306 5.72073 5.74436 5.80655 5.84338 5.90204 6.02540 6.09326 6.14717 6.15552 6.19020 6.31686 6.43065 6.64967 7.48797 7.58067 7.66561 8.26782 8.33589 8.60195 9.22417 10.84264 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007942 B = 0.003737 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.785529 B = 7490.812722 C =10228.543740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 H 0.117 0.883 4 C -0.151 4.151 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.543 3.457 8 O -0.539 6.539 9 N -0.718 5.718 10 C 0.108 3.892 11 C 0.200 3.800 12 C -0.152 4.152 13 N -0.737 5.737 14 C 0.534 3.466 15 O -0.498 6.498 16 C -0.155 4.155 17 S -0.055 6.055 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.866 5.866 22 Si 0.917 3.083 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.182 4.182 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.397 0.603 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.305 -10.010 20.046 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 H 0.135 0.865 4 C -0.188 4.188 5 C -0.212 4.212 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.416 6.416 9 N -0.370 5.370 10 C -0.016 4.016 11 C 0.113 3.887 12 C -0.209 4.209 13 N -0.392 5.392 14 C 0.321 3.679 15 O -0.371 6.371 16 C -0.306 4.306 17 S 0.172 5.828 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.174 4.174 27 C -0.186 4.186 28 C -0.219 4.219 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.231 0.769 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.360 -7.136 19.824 22.318 hybrid contribution -1.664 -2.801 -0.756 3.344 sum 5.696 -9.937 19.068 22.244 Atomic orbital electron populations 1.21411 0.92171 1.02035 1.02569 1.22366 0.95308 0.95102 1.01084 0.86482 1.23085 1.03056 1.01783 0.90883 1.22300 0.97888 1.05537 0.95442 0.85961 1.19600 0.84503 0.84631 0.78388 1.90702 1.68456 1.20871 1.61558 1.45780 1.24804 1.13260 1.53129 1.21836 0.85141 0.98090 0.96570 1.19909 0.87408 0.93674 0.87701 1.22051 1.02364 0.98114 0.98395 1.46239 1.45841 1.14566 1.32599 1.20155 0.82351 0.85238 0.80176 1.90708 1.57421 1.19809 1.69118 1.23568 0.98896 1.06790 1.01363 1.85443 1.48324 1.14035 1.35036 1.22906 1.23486 1.02019 1.20079 0.90988 1.24982 0.97163 0.94835 0.96532 1.70025 1.40885 1.09370 1.29898 0.86138 0.80678 0.79240 0.79569 1.19650 1.20560 1.20547 1.22397 0.97025 1.01215 0.96801 1.23016 1.02314 1.00966 0.92309 1.22986 0.98519 0.94631 1.05761 0.92446 0.91700 0.91602 0.87923 0.88442 0.76895 0.91182 0.88042 0.90624 0.91388 0.92073 0.76895 0.89525 0.89495 0.92221 0.87360 0.88223 0.89017 0.89189 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.19 37.16 0.38 -0.69 16 2 C -0.12 -1.25 5.92 -90.62 -0.54 -1.79 16 3 H 0.12 1.44 7.67 -51.93 -0.40 1.04 16 4 C -0.15 -1.28 9.88 -26.73 -0.26 -1.55 16 5 C -0.19 -2.04 5.91 -91.77 -0.54 -2.58 16 6 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 7 C 0.54 7.61 7.61 -10.98 -0.08 7.53 16 8 O -0.54 -9.85 16.26 5.56 0.09 -9.76 16 9 N -0.72 -8.51 5.13 -60.29 -0.31 -8.82 16 10 C 0.11 1.41 4.24 -4.05 -0.02 1.40 16 11 C 0.20 2.09 0.55 -131.82 -0.07 2.02 16 12 C -0.15 -1.06 8.20 37.16 0.30 -0.76 16 13 N -0.74 -8.44 4.19 -47.61 -0.20 -8.64 16 14 C 0.53 9.01 5.11 -10.98 -0.06 8.95 16 15 O -0.50 -10.28 11.78 5.56 0.07 -10.21 16 16 C -0.16 -2.98 6.16 36.01 0.22 -2.75 16 17 S -0.05 -1.46 20.57 -107.50 -2.21 -3.67 16 18 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 19 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 22 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.15 -1.77 4.82 -90.62 -0.44 -2.21 16 27 C -0.15 -2.02 8.30 -26.69 -0.22 -2.25 16 28 C -0.18 -1.82 9.68 -26.69 -0.26 -2.08 16 29 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.64 7.15 -40.82 -0.29 3.35 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.82 5.92 -51.93 -0.31 1.51 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.42 6.96 -51.92 -0.36 0.06 16 39 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 40 H 0.40 3.42 8.49 -40.82 -0.35 3.08 16 41 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 42 H 0.09 1.56 8.14 -51.91 -0.42 1.13 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.11 1.23 8.07 -51.93 -0.42 0.81 16 45 H 0.10 1.56 5.09 -51.93 -0.26 1.30 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.81 7.26 -51.93 -0.38 0.43 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -35.53 400.53 -9.93 -45.46 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.72 Total: 8.24 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.39 Total: -9.55 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.23 Total: -42.79 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.16 Total: -19.98 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.53 -9.93 -45.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531675989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.443 kcal (2) G-P(sol) polarization free energy of solvation -35.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds