Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 115.55424 * 2 1 4 4 C 1.53002 * 117.51698 * 145.70411 * 2 1 3 5 5 C 1.53002 * 117.49622 * 214.33220 * 2 1 3 6 6 H 1.08997 * 117.49850 * 359.97438 * 5 2 1 7 7 C 1.50696 * 117.49911 * 144.99717 * 5 2 1 8 8 O 1.21285 * 120.00247 * 0.02562 * 7 5 2 9 9 N 1.34781 * 120.00327 * 179.97438 * 7 5 2 10 10 C 1.46500 * 120.00285 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46994 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47388 * 60.00004 * 11 10 9 14 14 C 1.34776 * 119.99762 * 55.81053 * 13 11 10 15 15 O 1.21286 * 119.99996 * 4.97597 * 14 13 11 16 16 C 1.50706 * 120.00213 * 184.97694 * 14 13 11 17 17 S 1.80995 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99915 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99712 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00026 * 180.02562 * 18 17 16 21 21 N 1.31637 * 120.00024 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00173 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47239 * 90.00406 * 22 20 18 24 24 H 1.48504 * 109.47064 * 210.00483 * 22 20 18 25 25 H 1.48501 * 109.47049 * 329.99993 * 22 20 18 26 26 C 1.53001 * 109.47503 * 300.00011 * 11 10 9 27 27 C 1.53001 * 117.50228 * 252.73018 * 26 11 10 28 28 C 1.53001 * 117.50138 * 184.06474 * 26 11 10 29 29 H 1.09000 * 109.46703 * 205.67475 * 1 2 3 30 30 H 1.09004 * 109.46605 * 325.66473 * 1 2 3 31 31 H 1.08994 * 109.47128 * 85.67020 * 1 2 3 32 32 H 1.08998 * 117.50174 * 359.97438 * 4 2 1 33 33 H 1.09007 * 117.49379 * 214.96934 * 4 2 1 34 34 H 0.96999 * 119.99171 * 359.97438 * 9 7 5 35 35 H 1.08995 * 109.46840 * 299.99991 * 10 9 7 36 36 H 1.08998 * 109.46951 * 60.00092 * 10 9 7 37 37 H 1.09000 * 109.47544 * 60.00024 * 12 11 10 38 38 H 1.08998 * 109.47191 * 180.02562 * 12 11 10 39 39 H 1.08999 * 109.47172 * 299.99886 * 12 11 10 40 40 H 0.96998 * 120.00428 * 235.80885 * 13 11 10 41 41 H 1.08996 * 109.46781 * 300.00090 * 16 14 13 42 42 H 1.08994 * 109.46940 * 59.99889 * 16 14 13 43 43 H 0.97001 * 120.00303 * 179.97438 * 21 20 18 44 44 H 1.09002 * 115.54737 * 38.39794 * 26 11 10 45 45 H 1.09005 * 117.49330 * 359.97438 * 27 26 11 46 46 H 1.08991 * 117.50204 * 145.01660 * 27 26 11 47 47 H 1.08994 * 117.50088 * 214.97785 * 28 26 11 48 48 H 1.09000 * 117.49744 * 0.02562 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 0.7646 5 6 2.2364 -1.1207 -0.7654 6 1 1.6111 -1.8582 -1.2686 7 6 3.5289 -0.7805 -1.4616 8 8 3.9715 0.3471 -1.4016 9 7 4.1936 -1.7296 -2.1502 10 6 5.4498 -1.3987 -2.8274 11 6 5.9947 -2.6446 -3.5285 12 6 7.3070 -2.2992 -4.2353 13 7 5.0186 -3.1169 -4.5135 14 6 4.5767 -2.2845 -5.4770 15 8 5.0529 -1.1742 -5.5844 16 6 3.4910 -2.7333 -6.4210 17 16 3.1208 -1.4028 -7.5908 18 6 1.8572 -2.1766 -8.5444 19 1 1.5463 -3.1845 -8.3122 20 6 1.2622 -1.4913 -9.5945 21 7 0.3186 -2.0696 -10.3072 22 14 1.8005 0.2517 -9.9965 23 1 2.9125 0.2120 -10.9797 24 1 0.6563 1.0025 -10.5732 25 1 2.2602 0.9263 -8.7560 26 6 6.2471 -3.7429 -2.4936 27 6 7.7017 -4.0608 -2.1412 28 6 6.8859 -5.0434 -2.9851 29 1 -0.3633 -0.9262 0.4453 30 1 -0.3633 0.8487 0.5797 31 1 -0.3633 0.0776 -1.0247 32 1 1.6120 -1.8586 1.2682 33 1 3.1721 -0.8750 1.2676 34 1 3.8401 -2.6316 -2.1972 35 1 5.2700 -0.6160 -3.5643 36 1 6.1762 -1.0477 -2.0944 37 1 8.0331 -1.9481 -3.5021 38 1 7.6950 -3.1867 -4.7351 39 1 7.1276 -1.5167 -4.9725 40 1 4.6902 -4.0287 -4.4724 41 1 3.8264 -3.6145 -6.9677 42 1 2.5938 -2.9780 -5.8526 43 1 -0.0976 -1.5905 -11.0409 44 1 5.5085 -3.8153 -1.6953 45 1 8.4788 -3.4876 -2.6470 46 1 7.9200 -4.3426 -1.1113 47 1 6.5679 -5.9713 -2.5099 48 1 7.1266 -5.1164 -4.0457 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531675990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = -28.218631 kcal Electronic energy + Delta-G solvation = -27805.526598 eV Core-core repulsion = 23988.260464 eV Total energy + Delta-G solvation = -3817.266134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75073 -39.70696 -38.07566 -36.94794 -34.98807 -33.63903 -32.44951 -31.36554 -29.08397 -28.64152 -26.93917 -25.62696 -24.46760 -23.35227 -22.67181 -21.06745 -20.58700 -20.11053 -19.36955 -17.98722 -17.66282 -16.93474 -16.40742 -15.92120 -15.47461 -15.38629 -15.01058 -14.93528 -14.63509 -14.27938 -14.02470 -13.75662 -13.43092 -13.28753 -13.20582 -12.96040 -12.80518 -12.59594 -12.53543 -12.25922 -12.21845 -11.74645 -11.60749 -11.48046 -11.44609 -11.26001 -11.01508 -10.78857 -10.61558 -10.58493 -10.47684 -10.28531 -9.86018 -9.85480 -9.48726 -9.10267 -9.00760 -8.93709 -8.50907 -6.92546 -6.30266 -4.01854 2.45395 2.66510 2.91409 3.02267 3.18222 3.32464 3.49289 3.50930 3.62134 3.70636 4.18222 4.32271 4.37603 4.48121 4.54439 4.58752 4.62130 4.66407 4.73636 4.87562 4.99619 5.08948 5.10837 5.11052 5.28283 5.34576 5.38833 5.46054 5.49419 5.54668 5.57333 5.59377 5.66740 5.69743 5.72627 5.78438 5.80544 5.86669 5.96543 6.04008 6.10961 6.20707 6.37276 6.55080 7.42981 7.58400 7.92730 8.20715 8.39707 8.45584 9.16159 10.78963 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008168 B = 0.003670 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.189209 B = 7628.615758 C =10046.303332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 H 0.117 0.883 4 C -0.150 4.150 5 C -0.191 4.191 6 H 0.123 0.877 7 C 0.543 3.457 8 O -0.540 6.540 9 N -0.719 5.719 10 C 0.110 3.890 11 C 0.202 3.798 12 C -0.166 4.166 13 N -0.730 5.730 14 C 0.534 3.466 15 O -0.510 6.510 16 C -0.124 4.124 17 S -0.138 6.138 18 C -0.522 4.522 19 H 0.087 0.913 20 C 0.097 3.903 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.166 4.166 27 C -0.169 4.169 28 C -0.173 4.173 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.400 0.600 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -6.542 22.824 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 H 0.135 0.865 4 C -0.188 4.188 5 C -0.212 4.212 6 H 0.141 0.859 7 C 0.329 3.671 8 O -0.417 6.417 9 N -0.370 5.370 10 C -0.015 4.015 11 C 0.116 3.884 12 C -0.225 4.225 13 N -0.385 5.385 14 C 0.321 3.679 15 O -0.384 6.384 16 C -0.275 4.275 17 S 0.088 5.912 18 C -0.670 4.670 19 H 0.105 0.895 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.680 3.320 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.185 4.185 27 C -0.207 4.207 28 C -0.210 4.210 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.232 0.768 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.234 0.766 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.287 -3.842 22.522 25.056 hybrid contribution -0.900 -1.742 -0.397 2.000 sum 9.387 -5.583 22.125 24.674 Atomic orbital electron populations 1.21414 0.92134 1.02087 1.02569 1.22368 0.95330 0.95066 1.01073 0.86506 1.23089 1.03062 1.01786 0.90849 1.22307 0.97867 1.05577 0.95493 0.85904 1.19616 0.84521 0.84630 0.78345 1.90701 1.68492 1.20910 1.61552 1.45776 1.24789 1.13258 1.53157 1.21822 0.85245 0.97724 0.96671 1.19910 0.89588 0.91899 0.87039 1.22299 0.95145 1.03371 1.01636 1.46110 1.45853 1.15778 1.30745 1.20251 0.82561 0.84896 0.80219 1.90657 1.56924 1.20424 1.70434 1.23284 0.99293 1.04812 1.00124 1.84829 1.50331 1.19872 1.36195 1.22316 1.22235 1.04328 1.18091 0.89454 1.24700 0.93683 0.98333 0.94491 1.69939 1.24451 1.37847 1.19478 0.86751 0.79181 0.84648 0.81387 1.19202 1.19915 1.15904 1.22487 0.97811 0.97012 1.01164 1.23132 0.93421 1.03053 1.01053 1.23001 1.03974 0.93217 1.00820 0.92399 0.91689 0.91606 0.87882 0.88445 0.76820 0.88372 0.91000 0.91440 0.91874 0.89657 0.76568 0.88664 0.88652 0.91936 0.87249 0.87698 0.88628 0.88531 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 2 C -0.12 -1.20 5.92 -90.62 -0.54 -1.74 16 3 H 0.12 1.38 7.67 -51.93 -0.40 0.99 16 4 C -0.15 -1.24 9.88 -26.73 -0.26 -1.50 16 5 C -0.19 -1.97 5.91 -91.77 -0.54 -2.51 16 6 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 7 C 0.54 7.35 7.61 -10.99 -0.08 7.27 16 8 O -0.54 -9.56 16.26 5.55 0.09 -9.47 16 9 N -0.72 -8.20 4.99 -60.30 -0.30 -8.50 16 10 C 0.11 1.38 4.32 -4.04 -0.02 1.37 16 11 C 0.20 2.03 0.54 -131.82 -0.07 1.96 16 12 C -0.17 -1.76 7.10 37.16 0.26 -1.50 16 13 N -0.73 -8.12 4.74 -47.61 -0.23 -8.35 16 14 C 0.53 8.74 7.26 -10.98 -0.08 8.66 16 15 O -0.51 -10.18 12.10 5.55 0.07 -10.11 16 16 C -0.12 -2.31 6.16 36.01 0.22 -2.08 16 17 S -0.14 -3.46 18.55 -107.50 -1.99 -5.46 16 18 C -0.52 -14.92 10.04 30.94 0.31 -14.61 16 19 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 22 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 26 C -0.17 -1.19 4.86 -90.62 -0.44 -1.63 16 27 C -0.17 -1.08 9.64 -26.69 -0.26 -1.34 16 28 C -0.17 -1.08 9.72 -26.69 -0.26 -1.34 16 29 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.53 7.43 -40.82 -0.30 3.22 16 35 H 0.10 1.67 6.04 -51.93 -0.31 1.36 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.60 6.78 -51.93 -0.35 0.25 16 38 H 0.06 0.61 6.99 -51.93 -0.36 0.25 16 39 H 0.08 1.19 6.32 -51.93 -0.33 0.86 16 40 H 0.40 3.42 8.38 -40.82 -0.34 3.08 16 41 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.11 0.73 7.09 -51.93 -0.37 0.36 16 45 H 0.10 0.69 5.88 -51.93 -0.31 0.38 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.68 7.35 -51.93 -0.38 0.30 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -35.22 399.41 -9.42 -44.64 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.66 Total: 6.73 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.47 Total: -6.93 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.25 Total: -42.57 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.16 Total: -19.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.22 -9.42 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531675990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.422 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds