Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46851 * 2 1 4 4 O 1.21283 * 120.00170 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99773 * 180.02562 * 3 2 1 6 6 C 1.47082 * 125.63191 * 359.97438 * 5 3 2 7 7 C 1.54452 * 107.30006 * 179.03366 * 6 5 3 8 8 C 1.54392 * 102.87089 * 338.49653 * 7 6 5 9 9 C 1.47575 * 125.62875 * 179.97438 * 5 3 2 10 10 C 1.52116 * 110.50327 * 152.62869 * 8 7 6 11 11 C 1.53344 * 109.43769 * 64.09011 * 10 8 7 12 12 N 1.46928 * 108.69070 * 53.29696 * 11 10 8 13 13 C 1.34777 * 120.55263 * 125.67630 * 12 11 10 14 14 O 1.21281 * 120.00116 * 179.97438 * 13 12 11 15 15 C 1.50700 * 120.00046 * 359.97438 * 13 12 11 16 16 S 1.80993 * 109.47272 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00280 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99602 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00584 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99483 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00461 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47040 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47287 * 119.99925 * 21 19 17 24 24 H 1.48507 * 109.47133 * 240.00232 * 21 19 17 25 25 C 1.46933 * 118.89582 * 305.65500 * 12 11 10 26 26 C 1.52104 * 110.51443 * 276.65606 * 8 7 6 27 27 H 1.08997 * 109.47173 * 59.99829 * 1 2 3 28 28 H 1.09004 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46842 * 299.99609 * 1 2 3 30 30 H 1.09005 * 109.47094 * 240.00302 * 2 1 3 31 31 H 1.08999 * 109.47505 * 119.99747 * 2 1 3 32 32 H 1.08993 * 109.87639 * 59.60564 * 6 5 3 33 33 H 1.09003 * 109.99754 * 298.52848 * 6 5 3 34 34 H 1.09004 * 110.73256 * 220.15225 * 7 6 5 35 35 H 1.09010 * 110.73343 * 96.84160 * 7 6 5 36 36 H 1.08998 * 110.37680 * 84.46500 * 9 5 3 37 37 H 1.09005 * 110.37597 * 322.12637 * 9 5 3 38 38 H 1.08995 * 109.47344 * 184.07835 * 10 8 7 39 39 H 1.08994 * 109.47905 * 304.09941 * 10 8 7 40 40 H 1.08998 * 109.59629 * 173.05656 * 11 10 8 41 41 H 1.08996 * 109.60228 * 293.53354 * 11 10 8 42 42 H 1.09005 * 109.46989 * 300.00282 * 15 13 12 43 43 H 1.09000 * 109.47087 * 59.99653 * 15 13 12 44 44 H 0.97001 * 119.99645 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.60447 * 294.58627 * 25 12 11 46 46 H 1.09002 * 109.73366 * 174.18628 * 25 12 11 47 47 H 1.08998 * 109.47760 * 55.90678 * 26 8 7 48 48 H 1.08995 * 109.47804 * 175.92477 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.4183 0.6484 -0.0006 7 6 5.7708 1.3937 -0.0261 8 6 5.3894 2.7792 -0.5906 9 6 3.9834 3.0035 -0.0011 10 6 6.3571 3.8421 -0.0930 11 6 7.7612 3.5477 -0.6347 12 7 7.6821 3.4048 -2.0949 13 6 8.4676 4.1479 -2.8995 14 8 8.3944 4.0215 -4.1035 15 6 9.4369 5.1357 -2.3031 16 16 10.3402 5.9712 -3.6305 17 6 11.3700 7.0363 -2.6766 18 1 11.3082 7.0237 -1.5984 19 6 12.2605 7.8914 -3.3107 20 7 12.3354 7.9071 -4.6249 21 14 13.3527 9.0200 -2.2995 22 1 13.0771 8.8119 -0.8552 23 1 14.7779 8.7126 -2.5813 24 1 13.0709 10.4334 -2.6580 25 6 6.7328 2.4381 -2.6634 26 6 5.3346 2.7391 -2.1101 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 4.3261 0.0174 -0.8845 33 1 4.3486 0.0376 0.8995 34 1 6.4770 0.8894 -0.6858 35 1 6.1795 1.4862 0.9802 36 1 4.0555 3.3893 1.0157 37 1 3.4137 3.6892 -0.6285 38 1 6.0312 4.8221 -0.4416 39 1 6.3786 3.8326 0.9967 40 1 8.4300 4.3708 -0.3835 41 1 8.1355 2.6225 -0.1966 42 1 8.8892 5.8729 -1.7159 43 1 10.1419 4.6097 -1.6595 44 1 12.9575 8.5050 -5.0681 45 1 7.0276 1.4273 -2.3819 46 1 6.7231 2.5271 -3.7497 47 1 4.6423 1.9596 -2.4284 48 1 4.9943 3.7034 -2.4872 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532041065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = -77.709325 kcal Electronic energy + Delta-G solvation = -27601.479556 eV Core-core repulsion = 23782.067345 eV Total energy + Delta-G solvation = -3819.412211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17855 -39.72404 -38.44771 -36.07429 -33.46363 -32.76325 -32.44173 -31.73645 -30.23484 -29.21449 -27.74846 -25.51647 -24.92310 -23.59487 -23.37841 -22.82278 -20.17163 -19.57374 -18.37522 -17.76168 -17.32206 -16.73399 -16.69746 -15.79913 -15.73217 -15.34913 -15.24212 -14.81942 -14.46617 -14.42016 -14.06102 -13.86360 -13.66513 -13.47043 -13.30293 -13.02994 -12.83194 -12.66058 -12.61060 -12.32664 -12.16876 -12.06461 -11.94493 -11.65870 -11.53696 -11.45043 -11.10304 -11.07773 -11.02924 -10.79456 -10.77405 -10.68365 -10.14126 -9.80742 -9.37137 -9.08884 -9.02206 -8.53860 -8.23520 -6.51674 -6.23208 -3.93840 2.30406 2.59320 2.91073 3.02642 3.20317 3.24905 3.29832 3.57686 3.88149 4.06133 4.18443 4.27892 4.32570 4.58843 4.64024 4.65900 4.73758 4.79842 4.82283 4.94184 5.03009 5.08174 5.12056 5.14218 5.21458 5.27700 5.33106 5.40001 5.40565 5.45351 5.47504 5.54156 5.58581 5.60799 5.64543 5.75204 5.80022 5.84014 5.85719 5.90058 5.97412 6.06933 6.09439 6.61645 7.13662 7.52651 7.58408 7.82620 8.33759 8.53994 9.22244 10.84251 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.002036 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.390814 B =13749.716770 C =14027.302221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C 0.525 3.475 4 O -0.541 6.541 5 N -0.620 5.620 6 C 0.101 3.899 7 C -0.127 4.127 8 C -0.068 4.068 9 C 0.116 3.884 10 C -0.120 4.120 11 C 0.110 3.890 12 N -0.619 5.619 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.114 3.886 26 C -0.117 4.117 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 -18.609 13.749 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.314 3.686 4 O -0.418 6.418 5 N -0.355 5.355 6 C -0.022 4.022 7 C -0.164 4.164 8 C -0.068 4.068 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.013 4.013 12 N -0.356 5.356 13 C 0.323 3.677 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.008 4.008 26 C -0.156 4.156 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.272 -18.249 11.790 28.389 hybrid contribution 0.868 0.814 2.153 2.460 sum -17.404 -17.435 13.944 28.307 Atomic orbital electron populations 1.21542 0.92935 1.01635 1.03425 1.21617 0.98585 0.93528 1.04209 1.20501 0.80326 0.91970 0.75788 1.90722 1.54327 1.46796 1.49915 1.48595 1.05105 1.08128 1.73640 1.22085 0.87061 0.91292 1.01731 1.22771 0.96006 0.95245 1.02427 1.21089 0.94239 0.95516 0.96003 1.22220 0.92322 0.85049 1.01058 1.21762 0.94544 0.98823 1.00754 1.21718 0.96913 1.02593 0.80105 1.48087 1.40108 1.41019 1.06380 1.20344 0.80300 0.80343 0.86707 1.90692 1.67418 1.66579 1.14420 1.23552 1.00421 1.00178 1.05957 1.85423 1.45280 1.46739 1.06078 1.22895 1.25056 1.25509 0.94813 0.90895 1.24997 0.96673 0.96744 0.95199 1.70033 1.35694 1.36915 1.07598 0.86118 0.79732 0.79863 0.79787 1.19615 1.20564 1.20570 1.21534 0.87378 0.91565 1.00369 1.21734 0.97335 1.03091 0.93392 0.91914 0.92004 0.92000 0.88970 0.89063 0.91240 0.91299 0.89277 0.90061 0.91239 0.90217 0.90677 0.90251 0.88956 0.91355 0.89278 0.89298 0.92233 0.91800 0.88743 0.90855 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.16 0.34 -0.55 16 2 C -0.14 -0.83 5.61 -27.88 -0.16 -0.98 16 3 C 0.52 5.06 7.85 -10.98 -0.09 4.98 16 4 O -0.54 -7.51 16.25 5.55 0.09 -7.42 16 5 N -0.62 -4.95 3.32 -170.78 -0.57 -5.51 16 6 C 0.10 0.51 6.11 -2.96 -0.02 0.49 16 7 C -0.13 -0.67 4.92 -25.24 -0.12 -0.79 16 8 C -0.07 -0.49 0.55 -154.11 -0.08 -0.58 16 9 C 0.12 0.98 5.81 -2.88 -0.02 0.96 16 10 C -0.12 -0.93 4.84 -27.00 -0.13 -1.06 16 11 C 0.11 1.04 6.07 -3.63 -0.02 1.02 16 12 N -0.62 -8.08 2.96 -172.58 -0.51 -8.59 16 13 C 0.54 9.84 7.71 -10.99 -0.08 9.75 16 14 O -0.52 -11.60 15.27 5.56 0.08 -11.52 16 15 C -0.15 -2.98 4.50 36.01 0.16 -2.81 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 18 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 21 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.11 1.25 6.12 -3.63 -0.02 1.23 16 26 C -0.12 -1.06 4.85 -27.01 -0.13 -1.19 16 27 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.46 6.17 -51.93 -0.32 0.14 16 35 H 0.08 0.36 7.98 -51.92 -0.41 -0.05 16 36 H 0.07 0.56 7.99 -51.93 -0.41 0.15 16 37 H 0.08 0.82 7.94 -51.93 -0.41 0.41 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 40 H 0.09 0.93 5.91 -51.93 -0.31 0.63 16 41 H 0.07 0.52 7.62 -51.93 -0.40 0.13 16 42 H 0.09 1.63 7.70 -51.91 -0.40 1.23 16 43 H 0.09 1.62 7.93 -51.92 -0.41 1.20 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 46 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 47 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -36.32 389.61 -9.66 -45.98 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -7.95 Total: -3.54 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.17 Total: -2.32 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.34 Total: -39.38 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.32 -9.66 -45.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532041065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.728 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds