Wall clock time and date at job start Sat Apr 11 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.05912 * 2 1 4 4 C 1.54259 * 110.03524 * 238.58162 * 2 1 3 5 5 C 1.54893 * 104.19735 * 217.10886 * 4 2 1 6 6 C 1.54884 * 102.75111 * 37.93648 * 5 4 2 7 7 H 1.09004 * 110.48381 * 80.86558 * 6 5 4 8 8 C 1.50695 * 110.48960 * 203.38147 * 6 5 4 9 9 O 1.21282 * 119.99845 * 118.55318 * 8 6 5 10 10 N 1.34774 * 120.00189 * 298.54961 * 8 6 5 11 11 C 1.46494 * 120.00130 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47486 * 174.95468 * 11 10 8 13 13 N 1.46507 * 115.54773 * 86.04762 * 12 11 10 14 14 C 1.34771 * 119.99711 * 40.75786 * 13 12 11 15 15 O 1.21287 * 120.00408 * 5.34153 * 14 13 12 16 16 C 1.50698 * 119.99840 * 185.33885 * 14 13 12 17 17 S 1.80999 * 109.47302 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00314 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99982 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00257 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00336 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99927 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47384 * 89.99711 * 22 20 18 24 24 H 1.48502 * 109.47290 * 209.99761 * 22 20 18 25 25 H 1.48500 * 109.47147 * 329.99868 * 22 20 18 26 26 C 1.52997 * 117.52060 * 231.75268 * 12 11 10 27 27 C 1.53004 * 117.50026 * 300.38482 * 12 11 10 28 28 C 1.53881 * 110.03219 * 121.41261 * 2 1 3 29 29 H 1.08995 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47366 * 299.96973 * 1 2 3 31 31 H 1.09010 * 109.46750 * 59.96824 * 1 2 3 32 32 H 1.09006 * 110.48941 * 98.43175 * 4 2 1 33 33 H 1.09001 * 110.48959 * 335.78016 * 4 2 1 34 34 H 1.09007 * 110.75253 * 279.62884 * 5 4 2 35 35 H 1.08997 * 110.76137 * 156.25741 * 5 4 2 36 36 H 0.96995 * 120.00048 * 359.97438 * 10 8 6 37 37 H 1.09009 * 109.47344 * 54.95469 * 11 10 8 38 38 H 1.09000 * 109.47285 * 294.95585 * 11 10 8 39 39 H 0.97000 * 119.99877 * 220.48475 * 13 12 11 40 40 H 1.09001 * 109.47442 * 300.00151 * 16 14 13 41 41 H 1.09004 * 109.47523 * 60.00392 * 16 14 13 42 42 H 0.96997 * 120.00094 * 180.02562 * 21 20 18 43 43 H 1.09010 * 117.49602 * 214.96879 * 26 12 11 44 44 H 1.08994 * 117.50243 * 359.97438 * 26 12 11 45 45 H 1.09001 * 117.49413 * 359.97085 * 27 12 11 46 46 H 1.08999 * 117.50009 * 144.97013 * 27 12 11 47 47 H 1.09000 * 110.02686 * 0.02562 * 28 2 1 48 48 H 1.08999 * 110.03276 * 238.57438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3136 -1.5008 -0.7189 6 6 2.8875 -1.9406 0.7037 7 1 2.2790 -2.8438 0.6575 8 6 4.0989 -2.1660 1.5712 9 8 4.2624 -1.4976 2.5699 10 7 5.0006 -3.1104 1.2373 11 6 6.1779 -3.3299 2.0809 12 6 6.9666 -4.5302 1.5537 13 7 7.9355 -4.2341 0.4953 14 6 8.6928 -3.1217 0.5671 15 8 8.6430 -2.4166 1.5527 16 6 9.6018 -2.7538 -0.5772 17 16 10.4794 -1.2210 -0.1820 18 6 11.4398 -1.0317 -1.6471 19 1 11.3638 -1.7606 -2.4405 20 6 12.2939 0.0540 -1.7816 21 7 13.0118 0.1951 -2.8759 22 14 12.4259 1.3142 -0.4091 23 1 13.4957 0.9062 0.5366 24 1 12.7556 2.6422 -0.9864 25 1 11.1312 1.3963 0.3136 26 6 7.3250 -5.6339 2.5509 27 6 6.2456 -5.8784 1.4943 28 6 2.0571 -0.7535 1.2338 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5144 -0.8898 32 1 2.3298 -0.0536 -2.0254 33 1 1.3143 -1.4661 -1.5965 34 1 4.1710 -0.8290 -0.6749 35 1 3.5326 -2.3679 -1.3420 36 1 4.8696 -3.6452 0.4388 37 1 5.8598 -3.5256 3.1050 38 1 6.8103 -2.4423 2.0604 39 1 8.0345 -4.8408 -0.2551 40 1 10.3239 -3.5540 -0.7394 41 1 9.0089 -2.6108 -1.4807 42 1 13.6090 0.9537 -2.9697 43 1 8.2816 -6.1397 2.4194 44 1 6.9992 -5.5049 3.5829 45 1 5.2095 -5.9102 1.8314 46 1 6.4918 -6.5449 0.6677 47 1 1.2228 -1.1195 1.8323 48 1 2.6866 -0.0952 1.8326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535261321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:23 Heat of formation + Delta-G solvation = -66.732881 kcal Electronic energy + Delta-G solvation = -27295.852273 eV Core-core repulsion = 23476.916036 eV Total energy + Delta-G solvation = -3818.936237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51832 -39.74643 -37.91693 -37.32435 -34.28940 -32.92107 -32.45800 -31.73850 -29.31859 -29.14675 -27.35677 -25.64235 -25.18996 -22.95920 -22.13126 -21.54184 -20.36287 -20.00453 -19.38292 -17.96019 -17.64024 -16.73463 -16.65199 -15.80371 -15.52030 -15.38067 -15.04045 -14.94798 -14.84262 -14.37667 -13.98053 -13.79562 -13.65470 -13.50195 -13.37628 -12.81976 -12.79516 -12.67488 -12.41381 -12.19070 -11.90835 -11.85897 -11.40754 -11.29094 -11.24025 -11.07419 -11.02367 -11.00130 -10.95466 -10.81964 -10.64681 -10.62500 -9.87844 -9.82846 -9.62769 -9.03704 -8.99343 -8.82004 -8.52747 -6.94463 -6.31131 -4.03175 2.59163 2.63948 2.76612 2.96811 3.17261 3.32352 3.50146 3.56278 3.64056 4.21605 4.26937 4.27357 4.31605 4.46239 4.50160 4.63707 4.68916 4.86510 4.96592 5.04461 5.07908 5.08261 5.20798 5.21431 5.25282 5.32015 5.35634 5.41707 5.51228 5.55505 5.59692 5.64680 5.69415 5.70486 5.77058 5.79275 5.88025 5.93488 5.95262 6.08551 6.11190 6.19617 6.35595 6.51368 7.40559 7.49795 7.91837 8.17545 8.38681 8.39513 9.15114 10.78043 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.002974 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.909326 B = 9413.016419 C =11360.391563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.112 4.112 7 H 0.098 0.902 8 C 0.517 3.483 9 O -0.537 6.537 10 N -0.725 5.725 11 C 0.133 3.867 12 C 0.096 3.904 13 N -0.706 5.706 14 C 0.534 3.466 15 O -0.506 6.506 16 C -0.124 4.124 17 S -0.138 6.138 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.172 4.172 27 C -0.173 4.173 28 C -0.107 4.107 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.403 0.597 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.852 -11.938 4.397 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.134 4.134 7 H 0.116 0.884 8 C 0.304 3.696 9 O -0.414 6.414 10 N -0.376 5.376 11 C 0.009 3.991 12 C 0.007 3.993 13 N -0.360 5.360 14 C 0.321 3.679 15 O -0.380 6.380 16 C -0.275 4.275 17 S 0.088 5.912 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.680 3.320 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.211 4.211 27 C -0.211 4.211 28 C -0.145 4.145 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.086 0.914 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.669 -10.126 6.654 26.590 hybrid contribution 0.462 -0.980 -1.610 1.941 sum -23.207 -11.106 5.044 26.217 Atomic orbital electron populations 1.21881 0.95010 1.01631 1.01591 1.21778 0.95617 0.99841 0.94566 0.90781 1.22437 0.96733 0.99032 0.97396 1.22511 0.98818 1.00606 0.93444 1.22153 0.94759 1.00802 0.95638 0.88385 1.20555 0.84011 0.79249 0.85834 1.90708 1.76747 1.46628 1.27298 1.45980 1.23966 1.38744 1.28906 1.21379 0.85734 0.98676 0.93280 1.20757 0.94469 0.90089 0.93963 1.45358 1.39594 1.25932 1.25086 1.20328 0.79540 0.79796 0.88237 1.90635 1.64412 1.50793 1.32113 1.23286 1.00744 1.04334 0.99133 1.84853 1.52641 1.25334 1.28331 1.22307 1.27705 1.14452 1.02525 0.89398 1.24706 0.93829 0.97018 0.95709 1.69934 1.25277 1.30334 1.26115 0.86748 0.81474 0.81152 0.82577 1.19179 1.19891 1.15884 1.23474 1.00003 1.01395 0.96218 1.23336 0.98519 0.96881 1.02319 1.22159 0.99007 0.95974 0.97367 0.92697 0.92707 0.92765 0.91252 0.91321 0.90572 0.90934 0.76875 0.90592 0.86843 0.76230 0.88507 0.88423 0.91910 0.87919 0.87861 0.87654 0.87985 0.91434 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.84 37.16 0.33 -0.63 16 2 C -0.10 -0.81 3.50 -89.50 -0.31 -1.12 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -0.88 6.36 -25.07 -0.16 -1.04 16 5 C -0.12 -0.97 6.26 -24.74 -0.15 -1.13 16 6 C -0.11 -1.01 3.25 -90.12 -0.29 -1.30 16 7 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 8 C 0.52 6.46 7.15 -10.99 -0.08 6.38 16 9 O -0.54 -9.11 15.45 5.56 0.09 -9.02 16 10 N -0.72 -7.75 5.38 -60.30 -0.32 -8.08 16 11 C 0.13 1.71 5.47 -4.04 -0.02 1.69 16 12 C 0.10 0.99 2.28 -131.81 -0.30 0.69 16 13 N -0.71 -8.10 5.57 -47.60 -0.27 -8.36 16 14 C 0.53 8.92 7.60 -10.99 -0.08 8.84 16 15 O -0.51 -10.40 13.26 5.55 0.07 -10.32 16 16 C -0.12 -2.30 6.16 36.00 0.22 -2.08 16 17 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 16 18 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 19 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 22 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 26 C -0.17 -1.52 10.10 -26.73 -0.27 -1.79 16 27 C -0.17 -1.17 9.90 -26.73 -0.26 -1.43 16 28 C -0.11 -1.03 5.81 -25.61 -0.15 -1.18 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 34 H 0.08 0.81 8.05 -51.92 -0.42 0.39 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.40 3.16 8.35 -40.82 -0.34 2.82 16 37 H 0.08 0.98 7.89 -51.92 -0.41 0.57 16 38 H 0.11 1.99 5.20 -51.93 -0.27 1.72 16 39 H 0.40 3.39 8.78 -40.82 -0.36 3.04 16 40 H 0.10 1.66 8.14 -51.91 -0.42 1.23 16 41 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 44 H 0.10 0.87 8.05 -51.93 -0.42 0.46 16 45 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 48 H 0.08 1.03 6.90 -51.93 -0.36 0.67 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -35.35 401.89 -9.66 -45.01 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.03 Total: 4.70 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.32 Total: -5.97 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.19 Total: -42.10 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.16 Total: -19.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.35 -9.66 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535261321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.721 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds