Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.05912 * 2 1 4 4 C 1.54259 * 110.03524 * 238.58162 * 2 1 3 5 5 C 1.54893 * 104.19735 * 217.10886 * 4 2 1 6 6 C 1.54884 * 102.75111 * 37.93648 * 5 4 2 7 7 H 1.09004 * 110.48381 * 80.86558 * 6 5 4 8 8 C 1.50695 * 110.48960 * 203.38147 * 6 5 4 9 9 O 1.21282 * 119.99845 * 118.55318 * 8 6 5 10 10 N 1.34774 * 120.00189 * 298.54961 * 8 6 5 11 11 C 1.46494 * 120.00130 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47486 * 174.95468 * 11 10 8 13 13 N 1.46507 * 115.54773 * 86.04762 * 12 11 10 14 14 C 1.34771 * 119.99711 * 40.75786 * 13 12 11 15 15 O 1.21287 * 120.00408 * 5.34153 * 14 13 12 16 16 C 1.50698 * 119.99840 * 185.33885 * 14 13 12 17 17 S 1.80999 * 109.47302 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00314 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99982 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00257 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00336 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99927 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47384 * 89.99711 * 22 20 18 24 24 H 1.48502 * 109.47290 * 209.99761 * 22 20 18 25 25 H 1.48500 * 109.47147 * 329.99868 * 22 20 18 26 26 C 1.52997 * 117.52060 * 231.75268 * 12 11 10 27 27 C 1.53004 * 117.50026 * 300.38482 * 12 11 10 28 28 C 1.53881 * 110.03219 * 121.41261 * 2 1 3 29 29 H 1.08995 * 109.47348 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47366 * 299.96973 * 1 2 3 31 31 H 1.09010 * 109.46750 * 59.96824 * 1 2 3 32 32 H 1.09006 * 110.48941 * 98.43175 * 4 2 1 33 33 H 1.09001 * 110.48959 * 335.78016 * 4 2 1 34 34 H 1.09007 * 110.75253 * 279.62884 * 5 4 2 35 35 H 1.08997 * 110.76137 * 156.25741 * 5 4 2 36 36 H 0.96995 * 120.00048 * 359.97438 * 10 8 6 37 37 H 1.09009 * 109.47344 * 54.95469 * 11 10 8 38 38 H 1.09000 * 109.47285 * 294.95585 * 11 10 8 39 39 H 0.97000 * 119.99877 * 220.48475 * 13 12 11 40 40 H 1.09001 * 109.47442 * 300.00151 * 16 14 13 41 41 H 1.09004 * 109.47523 * 60.00392 * 16 14 13 42 42 H 0.96997 * 120.00094 * 180.02562 * 21 20 18 43 43 H 1.09010 * 117.49602 * 214.96879 * 26 12 11 44 44 H 1.08994 * 117.50243 * 359.97438 * 26 12 11 45 45 H 1.09001 * 117.49413 * 359.97085 * 27 12 11 46 46 H 1.08999 * 117.50009 * 144.97013 * 27 12 11 47 47 H 1.09000 * 110.02686 * 0.02562 * 28 2 1 48 48 H 1.08999 * 110.03276 * 238.57438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2368 5 6 3.3136 -1.5008 -0.7189 6 6 2.8875 -1.9406 0.7037 7 1 2.2790 -2.8438 0.6575 8 6 4.0989 -2.1660 1.5712 9 8 4.2624 -1.4976 2.5699 10 7 5.0006 -3.1104 1.2373 11 6 6.1779 -3.3299 2.0809 12 6 6.9666 -4.5302 1.5537 13 7 7.9355 -4.2341 0.4953 14 6 8.6928 -3.1217 0.5671 15 8 8.6430 -2.4166 1.5527 16 6 9.6018 -2.7538 -0.5772 17 16 10.4794 -1.2210 -0.1820 18 6 11.4398 -1.0317 -1.6471 19 1 11.3638 -1.7606 -2.4405 20 6 12.2939 0.0540 -1.7816 21 7 13.0118 0.1951 -2.8759 22 14 12.4259 1.3142 -0.4091 23 1 13.4957 0.9062 0.5366 24 1 12.7556 2.6422 -0.9864 25 1 11.1312 1.3963 0.3136 26 6 7.3250 -5.6339 2.5509 27 6 6.2456 -5.8784 1.4943 28 6 2.0571 -0.7535 1.2338 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5133 0.8902 31 1 -0.3633 0.5144 -0.8898 32 1 2.3298 -0.0536 -2.0254 33 1 1.3143 -1.4661 -1.5965 34 1 4.1710 -0.8290 -0.6749 35 1 3.5326 -2.3679 -1.3420 36 1 4.8696 -3.6452 0.4388 37 1 5.8598 -3.5256 3.1050 38 1 6.8103 -2.4423 2.0604 39 1 8.0345 -4.8408 -0.2551 40 1 10.3239 -3.5540 -0.7394 41 1 9.0089 -2.6108 -1.4807 42 1 13.6090 0.9537 -2.9697 43 1 8.2816 -6.1397 2.4194 44 1 6.9992 -5.5049 3.5829 45 1 5.2095 -5.9102 1.8314 46 1 6.4918 -6.5449 0.6677 47 1 1.2228 -1.1195 1.8323 48 1 2.6866 -0.0952 1.8326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535261321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -91.932998 kcal Electronic energy + Delta-G solvation = -27296.945032 eV Core-core repulsion = 23476.916036 eV Total energy + Delta-G solvation = -3820.028996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51396 -40.79402 -38.82877 -38.26900 -35.31691 -34.69229 -34.04271 -32.40841 -30.67293 -29.89198 -28.28512 -27.85410 -25.86831 -23.64913 -23.01310 -22.55149 -21.21603 -20.94595 -20.20150 -19.92965 -18.53202 -18.04441 -17.64623 -17.12549 -16.78348 -16.53766 -16.42273 -16.09753 -15.85115 -15.42860 -15.15812 -15.05398 -14.82962 -14.59455 -14.39039 -14.04174 -13.95234 -13.61418 -13.46214 -13.36039 -13.04365 -12.97703 -12.68617 -12.65072 -12.45787 -12.13921 -12.05548 -11.91102 -11.73179 -11.66701 -11.64989 -11.57775 -11.32661 -11.19259 -10.93641 -10.80108 -10.53860 -10.03208 -9.86883 -9.01069 -8.53719 -6.23769 0.96105 1.28336 1.43992 1.49178 1.52163 1.62172 2.07897 2.09763 2.22665 2.69374 2.84703 2.87403 3.47120 3.49922 3.57196 3.67817 3.78719 3.83948 3.98189 4.16705 4.22428 4.34659 4.38230 4.42871 4.50358 4.51974 4.55535 4.61419 4.69745 4.72644 4.73410 4.93771 4.95815 4.99073 5.00518 5.12700 5.14255 5.18497 5.29232 5.34281 5.34687 5.45111 5.49924 5.56119 5.69150 6.09772 6.45705 6.54677 6.92164 7.18799 7.26126 8.58627 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009483 B = 0.002974 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.909326 B = 9413.016419 C =11360.391563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.057 0.943 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.103 4.103 7 H 0.134 0.866 8 C 0.510 3.490 9 O -0.592 6.592 10 N -0.708 5.708 11 C 0.138 3.862 12 C 0.068 3.932 13 N -0.678 5.678 14 C 0.537 3.463 15 O -0.550 6.550 16 C -0.109 4.109 17 S -0.180 6.180 18 C -0.526 4.526 19 H 0.065 0.935 20 C 0.048 3.952 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.241 1.241 26 C -0.177 4.177 27 C -0.127 4.127 28 C -0.109 4.109 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.422 0.578 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.277 0.723 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.122 0.878 46 H 0.130 0.870 47 H 0.077 0.923 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.184 -14.770 3.615 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.076 0.924 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.124 4.124 7 H 0.152 0.848 8 C 0.298 3.702 9 O -0.472 6.472 10 N -0.360 5.360 11 C 0.013 3.987 12 C -0.020 4.020 13 N -0.332 5.332 14 C 0.323 3.677 15 O -0.428 6.428 16 C -0.260 4.260 17 S 0.046 5.954 18 C -0.673 4.673 19 H 0.083 0.917 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.733 3.267 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.165 1.165 26 C -0.216 4.216 27 C -0.165 4.165 28 C -0.147 4.147 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.117 0.883 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.261 0.739 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.140 0.860 46 H 0.149 0.851 47 H 0.096 0.904 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.019 -13.033 5.812 29.675 hybrid contribution 1.118 -0.227 -1.356 1.772 sum -24.901 -13.260 4.456 28.561 Atomic orbital electron populations 1.21848 0.93457 1.02548 1.01839 1.21770 0.96888 0.98900 0.94328 0.92426 1.22438 0.96608 0.99253 0.96746 1.22518 0.98217 1.01097 0.93407 1.22210 0.93320 1.01921 0.94937 0.84782 1.21282 0.84958 0.78524 0.85444 1.90688 1.78096 1.48576 1.29872 1.45852 1.22799 1.38314 1.29027 1.21052 0.85893 0.97934 0.93782 1.20754 0.95529 0.90584 0.95149 1.45003 1.38094 1.24222 1.25854 1.19988 0.79827 0.80941 0.86982 1.90655 1.65928 1.52683 1.33536 1.23262 1.01107 1.00998 1.00655 1.84847 1.53237 1.30331 1.26945 1.22447 1.27973 1.13776 1.03137 0.91681 1.25503 0.93729 0.98857 0.97707 1.70004 1.26240 1.31415 1.27717 0.85922 0.81140 0.79593 0.80056 1.18697 1.18310 1.16505 1.23565 1.01321 1.00126 0.96636 1.23507 0.98636 0.92911 1.01444 1.22147 0.98831 0.95921 0.97822 0.91387 0.93035 0.92015 0.91347 0.88972 0.93696 0.88330 0.74873 0.91230 0.91728 0.73946 0.86671 0.86784 0.91359 0.87630 0.87909 0.86021 0.85147 0.90433 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.84 71.98 0.64 -0.96 16 2 C -0.10 -1.55 3.50 -10.07 -0.04 -1.59 16 3 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 4 C -0.11 -1.44 6.36 31.67 0.20 -1.23 16 5 C -0.11 -1.72 6.26 31.88 0.20 -1.52 16 6 C -0.10 -1.70 3.25 -10.47 -0.03 -1.73 16 7 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 8 C 0.51 12.74 7.15 87.66 0.63 13.37 16 9 O -0.59 -21.27 15.45 -3.04 -0.05 -21.32 16 10 N -0.71 -14.36 5.38 -463.07 -2.49 -16.85 16 11 C 0.14 3.54 5.47 86.38 0.47 4.01 16 12 C 0.07 1.25 2.28 3.60 0.01 1.25 16 13 N -0.68 -13.96 5.57 -422.91 -2.36 -16.31 16 14 C 0.54 17.55 7.60 87.66 0.67 18.22 16 15 O -0.55 -23.19 13.26 -3.05 -0.04 -23.23 16 16 C -0.11 -3.95 6.16 71.24 0.44 -3.51 16 17 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 18 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 19 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 20 C 0.05 2.80 5.50 84.86 0.47 3.27 16 21 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 22 Si 0.91 45.65 27.74 68.60 1.90 47.55 16 23 H -0.26 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.24 -12.23 6.74 99.48 0.67 -11.56 16 26 C -0.18 -2.65 10.10 30.59 0.31 -2.34 16 27 C -0.13 -1.13 9.90 30.60 0.30 -0.82 16 28 C -0.11 -2.09 5.81 31.32 0.18 -1.91 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.78 7.85 -2.39 -0.02 0.77 16 34 H 0.04 0.96 8.05 -2.38 -0.02 0.94 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.41 5.36 8.35 -92.71 -0.77 4.59 16 37 H 0.07 1.84 7.89 -2.38 -0.02 1.82 16 38 H 0.06 2.39 5.20 -2.39 -0.01 2.38 16 39 H 0.42 5.49 8.78 -92.71 -0.81 4.67 16 40 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 44 H 0.10 1.56 8.05 -2.39 -0.02 1.54 16 45 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 48 H 0.05 1.24 6.90 -2.39 -0.02 1.22 16 Total: -1.00 -82.65 401.89 0.69 -81.96 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.65 Total: 19.03 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.12 Total: -5.26 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -4.55 Total: -88.58 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.09 Total: -44.55 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -82.65 0.69 -81.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535261321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.978 kcal (2) G-P(sol) polarization free energy of solvation -82.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds