Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 115.55445 * 2 1 4 4 C 1.53002 * 117.49571 * 214.29428 * 2 1 3 5 5 C 1.53000 * 117.49699 * 145.67415 * 2 1 3 6 6 H 1.09001 * 117.49791 * 359.97438 * 5 2 1 7 7 C 1.50702 * 117.49642 * 214.97523 * 5 2 1 8 8 O 1.21280 * 120.00141 * 0.02562 * 7 5 2 9 9 N 1.34779 * 119.99779 * 179.97438 * 7 5 2 10 10 C 1.46500 * 119.99960 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.52997 * 110.64313 * 59.30046 * 11 10 9 13 13 C 1.55160 * 110.71800 * 182.44283 * 11 10 9 14 14 C 1.55391 * 101.36524 * 153.94785 * 13 11 10 15 15 N 1.47424 * 104.87354 * 323.01332 * 14 13 11 16 16 C 1.34776 * 125.65218 * 204.16724 * 15 14 13 17 17 O 1.21279 * 120.00247 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99689 * 359.96167 * 16 15 14 19 19 S 1.81005 * 109.47121 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00077 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99973 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00249 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00281 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99796 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47165 * 90.00559 * 24 22 20 26 26 H 1.48500 * 109.47358 * 210.00243 * 24 22 20 27 27 H 1.48495 * 109.47153 * 330.00271 * 24 22 20 28 28 C 1.47025 * 108.70368 * 24.13661 * 15 14 13 29 29 H 1.09003 * 109.46785 * 274.32514 * 1 2 3 30 30 H 1.08998 * 109.46551 * 34.32695 * 1 2 3 31 31 H 1.09000 * 109.46831 * 154.32412 * 1 2 3 32 32 H 1.09009 * 117.49640 * 145.02434 * 4 2 1 33 33 H 1.09002 * 117.50155 * 0.02562 * 4 2 1 34 34 H 0.97001 * 120.00098 * 0.02562 * 9 7 5 35 35 H 1.09001 * 109.47106 * 60.00290 * 10 9 7 36 36 H 1.08997 * 109.47221 * 300.00197 * 10 9 7 37 37 H 1.09002 * 109.47153 * 60.69891 * 12 11 10 38 38 H 1.09001 * 109.46832 * 300.70082 * 12 11 10 39 39 H 1.09004 * 109.47261 * 180.70063 * 12 11 10 40 40 H 1.08999 * 111.00302 * 272.11106 * 13 11 10 41 41 H 1.08999 * 111.00721 * 35.97014 * 13 11 10 42 42 H 1.09000 * 110.34577 * 204.16724 * 14 13 11 43 43 H 1.08997 * 110.44664 * 81.91396 * 14 13 11 44 44 H 1.09003 * 109.47049 * 299.99688 * 18 16 15 45 45 H 1.09001 * 109.46990 * 59.99920 * 18 16 15 46 46 H 0.97000 * 119.99819 * 179.97438 * 23 22 20 47 47 H 1.09008 * 109.88061 * 239.52301 * 28 15 14 48 48 H 1.08991 * 110.01559 * 118.43005 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1213 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8579 1.2691 7 6 3.5293 -0.7807 1.4610 8 8 3.9716 0.3469 1.4014 9 7 4.1935 -1.7296 2.1502 10 6 5.4500 -1.3989 2.8270 11 6 5.9943 -2.6446 3.5291 12 6 6.2394 -3.7685 2.5204 13 6 7.2947 -2.3120 4.3073 14 6 7.2756 -3.4011 5.4154 15 7 5.8540 -3.5475 5.7776 16 6 5.3867 -4.0062 6.9556 17 8 4.1913 -4.0841 7.1448 18 6 6.3496 -4.4225 8.0375 19 16 5.4224 -4.9869 9.4860 20 6 6.7559 -5.4001 10.5609 21 1 7.7759 -5.2689 10.2311 22 6 6.4955 -5.8943 11.8315 23 7 7.4917 -6.2025 12.6348 24 14 4.7312 -6.1205 12.4022 25 1 4.2671 -7.4856 12.0467 26 1 4.6604 -5.9415 13.8747 27 1 3.8636 -5.1143 11.7390 28 6 5.0304 -3.1096 4.6411 29 1 -0.3633 0.0775 1.0248 30 1 -0.3632 0.8487 -0.5795 31 1 -0.3633 -0.9262 -0.4453 32 1 3.1716 -0.8756 -1.2681 33 1 1.6112 -1.8587 -1.2681 34 1 3.8395 -2.6315 2.1982 35 1 5.2709 -0.6155 3.5633 36 1 6.1765 -1.0491 2.0936 37 1 6.9738 -3.4420 1.7840 38 1 5.3047 -4.0150 2.0168 39 1 6.6145 -4.6493 3.0418 40 1 8.1707 -2.4168 3.6671 41 1 7.2463 -1.3128 4.7402 42 1 7.8551 -3.0738 6.2786 43 1 7.6679 -4.3425 5.0309 44 1 6.9799 -5.2327 7.6709 45 1 6.9741 -3.5731 8.3146 46 1 7.3096 -6.5475 13.5229 47 1 4.3888 -2.2826 4.9452 48 1 4.4210 -3.9383 4.2808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536957186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -57.622970 kcal Electronic energy + Delta-G solvation = -26785.581031 eV Core-core repulsion = 22967.039829 eV Total energy + Delta-G solvation = -3818.541202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74646 -39.97436 -38.16130 -37.11531 -35.17189 -32.81486 -32.45447 -29.85646 -29.68189 -29.17442 -27.51344 -26.16562 -25.57511 -24.17278 -22.93409 -21.28462 -20.53095 -19.60081 -19.46127 -17.95237 -17.53193 -16.73387 -16.46080 -16.25613 -15.62658 -15.24034 -15.09936 -14.95565 -14.67012 -14.34404 -14.04862 -13.94321 -13.78895 -13.66011 -13.26031 -13.04376 -12.88061 -12.79588 -12.59524 -12.45361 -12.39924 -12.32328 -11.88418 -11.85805 -11.33998 -11.25419 -11.24173 -11.05706 -11.01850 -10.82157 -10.62282 -10.53659 -10.13123 -9.87623 -9.57306 -9.43729 -9.02044 -8.64450 -8.51951 -6.94340 -6.30577 -4.02637 2.14803 2.64814 2.72220 2.90382 3.16543 3.31767 3.37660 3.49297 3.57499 3.96607 4.09961 4.23993 4.27424 4.31149 4.31644 4.35515 4.64076 4.67701 4.72599 4.82695 4.88324 4.96875 5.08483 5.09995 5.16425 5.21980 5.25987 5.28920 5.32609 5.35652 5.44389 5.47838 5.49532 5.51217 5.59826 5.62511 5.65750 5.69196 5.78734 5.87194 5.90234 5.98089 6.04284 6.27575 7.11088 7.51768 7.87422 7.92391 8.38852 8.39781 9.15555 10.78557 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002018 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.466627 B =13873.606087 C =14887.902517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 H 0.117 0.883 4 C -0.149 4.149 5 C -0.194 4.194 6 H 0.124 0.876 7 C 0.544 3.456 8 O -0.541 6.541 9 N -0.725 5.725 10 C 0.137 3.863 11 C -0.088 4.088 12 C -0.138 4.138 13 C -0.119 4.119 14 C 0.100 3.900 15 N -0.623 5.623 16 C 0.547 3.453 17 O -0.517 6.517 18 C -0.118 4.118 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.119 3.881 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.402 0.598 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.069 0.931 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 8.909 -28.921 30.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.135 0.865 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.142 0.858 7 C 0.330 3.670 8 O -0.418 6.418 9 N -0.377 5.377 10 C 0.013 3.987 11 C -0.089 4.089 12 C -0.195 4.195 13 C -0.158 4.158 14 C -0.023 4.023 15 N -0.361 5.361 16 C 0.335 3.665 17 O -0.392 6.392 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.004 4.004 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.766 9.501 -28.392 30.694 hybrid contribution 0.784 -0.710 0.417 1.137 sum -5.982 8.791 -27.975 29.928 Atomic orbital electron populations 1.21417 0.92106 1.02294 1.02400 1.22385 0.95348 0.95040 1.01180 0.86479 1.23109 1.03167 1.01662 0.90660 1.22325 0.97759 1.05641 0.95819 0.85772 1.19667 0.84596 0.84571 0.78137 1.90704 1.68598 1.21016 1.61507 1.45956 1.24729 1.13687 1.53340 1.21353 0.85213 0.95888 0.96246 1.21905 0.96317 0.95600 0.95112 1.21839 1.02026 0.97591 0.98070 1.22928 0.96570 0.99594 0.96666 1.22419 0.82876 0.98694 0.98346 1.48417 1.07308 1.66330 1.14018 1.20008 0.89298 0.76180 0.81001 1.90708 1.16283 1.52967 1.79226 1.23257 1.01277 1.04489 0.97772 1.84798 1.13555 1.84390 1.08858 1.22299 0.93283 1.50091 1.01202 0.89379 1.24708 0.97799 0.93494 0.95286 1.69936 1.31228 1.42047 1.08402 0.86737 0.85146 0.80897 0.79089 1.19201 1.19913 1.15933 1.21942 0.93320 0.99684 0.85487 0.91792 0.91602 0.92283 0.88296 0.87707 0.76249 0.90882 0.90758 0.91767 0.92340 0.91560 0.89191 0.89886 0.89912 0.91023 0.88566 0.88519 0.91927 0.91300 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.19 37.16 0.38 -0.28 16 2 C -0.12 -0.84 5.92 -90.62 -0.54 -1.38 16 3 H 0.12 1.00 7.67 -51.93 -0.40 0.61 16 4 C -0.15 -0.85 9.88 -26.73 -0.26 -1.12 16 5 C -0.19 -1.36 5.91 -91.77 -0.54 -1.90 16 6 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 7 C 0.54 5.20 7.61 -10.98 -0.08 5.11 16 8 O -0.54 -7.25 16.26 5.56 0.09 -7.16 16 9 N -0.73 -5.45 5.10 -60.29 -0.31 -5.76 16 10 C 0.14 1.06 4.49 -4.04 -0.02 1.04 16 11 C -0.09 -0.63 0.61 -152.67 -0.09 -0.72 16 12 C -0.14 -0.80 8.24 37.16 0.31 -0.49 16 13 C -0.12 -0.82 6.06 -24.32 -0.15 -0.97 16 14 C 0.10 0.94 6.39 -2.27 -0.01 0.93 16 15 N -0.62 -8.21 3.33 -170.21 -0.57 -8.77 16 16 C 0.55 9.92 7.87 -10.98 -0.09 9.84 16 17 O -0.52 -11.35 16.19 5.56 0.09 -11.26 16 18 C -0.12 -2.29 5.16 36.01 0.19 -2.10 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -14.97 10.04 30.94 0.31 -14.65 16 21 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 24 Si 0.86 21.76 27.74 -169.99 -4.71 17.04 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 C 0.12 1.26 5.60 -3.06 -0.02 1.24 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 32 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.10 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.40 2.29 7.09 -40.82 -0.29 2.00 16 35 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.30 6.90 -51.93 -0.36 -0.06 16 39 H 0.07 0.43 7.50 -51.93 -0.39 0.04 16 40 H 0.09 0.45 8.04 -51.93 -0.42 0.03 16 41 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 42 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 43 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.76 7.85 -51.91 -0.41 1.35 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.07 0.82 7.80 -51.92 -0.41 0.42 16 48 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -36.08 402.92 -9.34 -45.42 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.07 Total: -1.57 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.72 Total: -2.76 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.10 Total: -40.18 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.08 -9.34 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536957186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.202 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds