Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46816 * 2 1 4 4 O 1.21276 * 120.00122 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99402 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99621 * 180.02562 * 5 3 2 7 7 H 1.09000 * 108.97026 * 33.92178 * 6 5 3 8 8 C 1.52527 * 109.04159 * 275.00091 * 6 5 3 9 9 C 1.53813 * 111.70161 * 293.48778 * 8 6 5 10 10 C 1.51620 * 107.02976 * 302.46192 * 9 8 6 11 11 H 1.09005 * 110.50444 * 303.65388 * 10 9 8 12 12 C 1.53059 * 116.67664 * 176.24722 * 10 9 8 13 13 N 1.48660 * 103.58551 * 202.96259 * 12 10 9 14 14 C 1.34780 * 125.78496 * 204.41038 * 13 12 10 15 15 O 1.21273 * 120.00330 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99936 * 0.02634 * 14 13 12 17 17 S 1.80996 * 109.47428 * 179.97438 * 16 14 13 18 18 C 1.76196 * 100.00227 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99919 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00126 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47277 * 90.00089 * 22 20 18 24 24 H 1.48508 * 109.46725 * 209.99672 * 22 20 18 25 25 H 1.48497 * 109.47384 * 329.99570 * 22 20 18 26 26 C 1.48638 * 108.21927 * 24.41335 * 13 12 10 27 27 C 1.52320 * 105.91646 * 3.16523 * 26 13 12 28 28 H 1.09001 * 110.23619 * 87.82733 * 27 26 13 29 29 C 1.50836 * 118.41109 * 213.82263 * 27 26 13 30 30 H 1.08999 * 109.47564 * 60.00031 * 1 2 3 31 31 H 1.08998 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46981 * 299.99619 * 1 2 3 33 33 H 1.08998 * 109.46981 * 240.00381 * 2 1 3 34 34 H 1.08999 * 109.47564 * 119.99969 * 2 1 3 35 35 H 0.96999 * 120.00891 * 0.02562 * 5 3 2 36 36 H 1.08996 * 109.03445 * 172.91691 * 8 6 5 37 37 H 1.08998 * 108.97787 * 54.01632 * 8 6 5 38 38 H 1.09004 * 109.94759 * 183.08254 * 9 8 6 39 39 H 1.09006 * 109.94561 * 61.84176 * 9 8 6 40 40 H 1.09002 * 110.62697 * 321.53281 * 12 10 9 41 41 H 1.08998 * 110.62327 * 84.39639 * 12 10 9 42 42 H 1.09002 * 109.47165 * 300.00003 * 16 14 13 43 43 H 1.09005 * 109.46893 * 59.99632 * 16 14 13 44 44 H 0.96997 * 120.00332 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.13476 * 244.05385 * 26 13 12 46 46 H 1.08998 * 110.22053 * 122.32489 * 26 13 12 47 47 H 1.08994 * 109.03239 * 58.56859 * 29 27 26 48 48 H 1.09001 * 110.00999 * 297.95067 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8457 3.0484 0.0000 7 1 3.1576 3.6672 0.5760 8 6 3.8923 3.5603 -1.4360 9 6 4.9459 2.8139 -2.2719 10 6 6.2781 2.9942 -1.5709 11 1 6.5026 4.0533 -1.4440 12 6 7.4773 2.2592 -2.1746 13 7 8.4250 2.1424 -1.0352 14 6 9.7621 2.0036 -1.1333 15 8 10.4379 1.9169 -0.1301 16 6 10.4172 1.9561 -2.4896 17 16 12.2060 1.7659 -2.2894 18 6 12.7022 1.7410 -3.9798 19 1 11.9621 1.8304 -4.7612 20 6 14.0442 1.6054 -4.3073 21 7 14.9462 1.4959 -3.3549 22 14 14.5702 1.5783 -6.0994 23 1 14.8556 2.9633 -6.5526 24 1 15.7932 0.7483 -6.2438 25 1 13.4801 1.0015 -6.9266 26 6 7.6435 2.2051 0.2276 27 6 6.1808 2.2836 -0.1899 28 1 5.7704 1.2817 -0.3163 29 6 5.2333 3.0900 0.6629 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9877 0.9299 -0.0013 36 1 4.1336 4.6232 -1.4268 37 1 2.9127 3.4223 -1.8935 38 1 4.9933 3.2379 -3.2750 39 1 4.6949 1.7545 -2.3266 40 1 7.1828 1.2725 -2.5319 41 1 7.9183 2.8430 -2.9826 42 1 10.0226 1.1114 -3.0544 43 1 10.2084 2.8815 -3.0266 44 1 15.8841 1.4016 -3.5836 45 1 7.9203 3.0928 0.7964 46 1 7.8170 1.3087 0.8229 47 1 5.5897 4.1187 0.7149 48 1 5.1794 2.6644 1.6650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572025281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = -85.899442 kcal Electronic energy + Delta-G solvation = -27277.737970 eV Core-core repulsion = 23457.970609 eV Total energy + Delta-G solvation = -3819.767361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14853 -39.79399 -38.39078 -36.06911 -33.62704 -33.02126 -32.44257 -32.10329 -30.43774 -29.09208 -27.40172 -25.56059 -25.08770 -24.49151 -21.65639 -21.60632 -21.11930 -19.68790 -19.32333 -17.68923 -17.63247 -16.71181 -16.42620 -16.12649 -15.61274 -15.30691 -15.20922 -14.81834 -14.71848 -14.35356 -14.07292 -13.88327 -13.71276 -13.48124 -13.16845 -12.91741 -12.74641 -12.62375 -12.53346 -12.29603 -12.17535 -12.16053 -11.92580 -11.85909 -11.59308 -11.36278 -11.07834 -11.03638 -10.96749 -10.79314 -10.68451 -10.40904 -10.17183 -9.82752 -9.42659 -9.41636 -9.08008 -8.55329 -8.24816 -6.51839 -6.22972 -3.93765 2.28959 2.79269 2.83756 3.05853 3.21100 3.24021 3.28887 3.57331 3.88219 4.12912 4.19023 4.24835 4.33511 4.56129 4.63636 4.66850 4.72753 4.77597 4.89026 5.02259 5.05014 5.10756 5.11996 5.13796 5.17126 5.25796 5.35580 5.38469 5.43414 5.50600 5.51885 5.56327 5.62675 5.64633 5.72480 5.75134 5.80586 5.81130 5.86531 5.93716 6.05866 6.11803 6.14356 6.31762 7.10254 7.58015 7.63962 7.86427 8.33802 8.54324 9.22213 10.84455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.001979 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.862338 B =14142.928058 C =14509.603134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.147 4.147 3 C 0.511 3.489 4 O -0.542 6.542 5 N -0.727 5.727 6 C 0.149 3.851 7 H 0.090 0.910 8 C -0.128 4.128 9 C -0.101 4.101 10 C -0.106 4.106 11 H 0.088 0.912 12 C 0.110 3.890 13 N -0.630 5.630 14 C 0.549 3.451 15 O -0.516 6.516 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.123 3.877 27 C -0.107 4.107 28 H 0.076 0.924 29 C -0.111 4.111 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.123 -0.395 5.380 28.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.187 4.187 3 C 0.298 3.702 4 O -0.419 6.419 5 N -0.381 5.381 6 C 0.044 3.956 7 H 0.108 0.892 8 C -0.167 4.167 9 C -0.139 4.139 10 C -0.125 4.125 11 H 0.106 0.894 12 C -0.013 4.013 13 N -0.368 5.368 14 C 0.337 3.663 15 O -0.390 6.390 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.000 4.000 27 C -0.126 4.126 28 H 0.094 0.906 29 C -0.150 4.150 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.381 0.111 6.922 28.243 hybrid contribution -0.039 -0.316 -2.381 2.402 sum -27.421 -0.206 4.542 27.795 Atomic orbital electron populations 1.21521 0.92987 1.01629 1.03326 1.21656 0.98760 0.93849 1.04409 1.20813 0.82154 0.91869 0.75340 1.90702 1.55318 1.46580 1.49304 1.46278 1.07108 1.08969 1.75700 1.21017 0.95063 0.83040 0.96436 0.89229 1.21918 0.99670 1.00299 0.94800 1.21282 0.92873 1.00974 0.98798 1.22144 0.94364 1.00562 0.95423 0.89402 1.22040 0.89169 1.00280 0.89838 1.49210 1.05571 1.75105 1.06958 1.20028 0.79556 0.75211 0.91474 1.90709 1.61675 1.48289 1.38377 1.23507 1.05422 1.04754 0.95983 1.85404 0.91475 1.95553 1.11000 1.22854 0.95386 1.58283 0.91809 0.90941 1.24995 0.95458 0.94536 0.98601 1.70017 1.01715 1.46287 1.32226 0.86166 0.78201 0.78255 0.82867 1.20262 1.20735 1.19697 1.21512 0.88937 1.02297 0.87242 1.21696 0.94469 0.99843 0.96566 0.90550 1.21473 0.92963 1.01685 0.98853 0.91997 0.92074 0.92024 0.88897 0.88926 0.76496 0.90909 0.91236 0.91083 0.91541 0.91276 0.90167 0.89355 0.89355 0.92171 0.91382 0.91206 0.89792 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.20 37.16 0.34 -0.44 16 2 C -0.15 -0.71 6.42 -27.88 -0.18 -0.89 16 3 C 0.51 3.92 7.77 -10.98 -0.09 3.84 16 4 O -0.54 -6.34 15.61 5.56 0.09 -6.25 16 5 N -0.73 -4.21 4.67 -53.61 -0.25 -4.46 16 6 C 0.15 0.95 2.71 -67.73 -0.18 0.76 16 7 H 0.09 0.71 7.51 -51.93 -0.39 0.32 16 8 C -0.13 -0.83 5.43 -26.55 -0.14 -0.98 16 9 C -0.10 -0.62 5.59 -27.01 -0.15 -0.77 16 10 C -0.11 -0.78 2.44 -89.90 -0.22 -1.00 16 11 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 12 C 0.11 1.10 6.33 -2.82 -0.02 1.08 16 13 N -0.63 -8.71 3.40 -170.54 -0.58 -9.29 16 14 C 0.55 10.50 7.89 -10.98 -0.09 10.42 16 15 O -0.52 -11.97 16.22 5.56 0.09 -11.88 16 16 C -0.15 -2.98 5.19 36.01 0.19 -2.79 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 22 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 C 0.12 1.33 6.67 -3.21 -0.02 1.31 16 27 C -0.11 -0.74 2.26 -90.66 -0.20 -0.95 16 28 H 0.08 0.46 6.19 -51.93 -0.32 0.14 16 29 C -0.11 -0.64 5.35 -27.38 -0.15 -0.79 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.40 1.61 6.87 -40.82 -0.28 1.33 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.39 7.90 -51.93 -0.41 -0.02 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.82 7.54 -51.93 -0.39 0.43 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.67 7.88 -51.91 -0.41 1.26 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.48 8.06 -51.93 -0.42 0.07 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -36.22 394.64 -9.99 -46.21 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.07 Total: -3.21 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.71 Total: -4.12 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.10 Total: -39.10 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.18 Total: -18.13 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.22 -9.99 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572025281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.690 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds