Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47180 * 2 1 4 4 O 1.21278 * 120.00131 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00152 * 180.02562 * 3 2 1 6 6 C 1.46500 * 120.00067 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.02052 * 36.06024 * 6 5 3 8 8 C 1.52527 * 108.97372 * 277.15326 * 6 5 3 9 9 C 1.53873 * 112.02340 * 185.67257 * 8 6 5 10 10 C 1.51439 * 107.02858 * 56.52093 * 9 8 6 11 11 H 1.09004 * 109.87739 * 55.06773 * 10 9 8 12 12 C 1.52332 * 117.44668 * 181.60298 * 10 9 8 13 13 N 1.48233 * 105.86909 * 145.79387 * 12 10 9 14 14 C 1.34775 * 125.78702 * 176.78739 * 13 12 10 15 15 O 1.21282 * 120.00577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46755 * 90.00066 * 22 20 18 24 24 H 1.48495 * 109.46931 * 210.00080 * 22 20 18 25 25 H 1.48500 * 109.46738 * 330.00322 * 22 20 18 26 26 C 1.48659 * 108.43085 * 357.04835 * 13 12 10 27 27 C 1.53282 * 103.33432 * 335.30147 * 26 13 12 28 28 H 1.08998 * 111.54100 * 284.28567 * 27 26 13 29 29 C 1.51607 * 116.58801 * 156.06824 * 27 26 13 30 30 H 1.09006 * 109.47172 * 59.99810 * 1 2 3 31 31 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47033 * 300.00294 * 1 2 3 33 33 H 1.09000 * 109.47038 * 240.00254 * 2 1 3 34 34 H 1.08998 * 109.47371 * 119.99998 * 2 1 3 35 35 H 0.97000 * 119.99600 * 0.02562 * 5 3 2 36 36 H 1.08997 * 109.04645 * 305.98779 * 8 6 5 37 37 H 1.09006 * 109.04017 * 64.93904 * 8 6 5 38 38 H 1.08997 * 109.64796 * 297.30350 * 9 8 6 39 39 H 1.09003 * 110.24171 * 176.06310 * 9 8 6 40 40 H 1.09001 * 110.17013 * 26.69261 * 12 10 9 41 41 H 1.08998 * 110.17098 * 264.89506 * 12 10 9 42 42 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 43 43 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 44 44 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 45 45 H 1.08998 * 110.62766 * 93.88274 * 26 13 12 46 46 H 1.09004 * 110.62837 * 216.89807 * 26 13 12 47 47 H 1.09003 * 109.94859 * 303.28665 * 29 27 26 48 48 H 1.08999 * 109.94807 * 64.45113 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1791 3.6605 0.6073 8 6 3.8410 3.5766 -1.4308 9 6 4.4729 4.9760 -1.5313 10 6 5.8725 4.8725 -0.9621 11 1 6.4255 4.0878 -1.4785 12 6 6.7059 6.1466 -0.9118 13 7 7.5346 6.0407 0.3127 14 6 8.4668 6.9281 0.7127 15 8 9.0867 6.7362 1.7373 16 6 8.7388 8.1589 -0.1133 17 16 10.0333 9.1442 0.6803 18 6 10.1451 10.4803 -0.4629 19 1 9.5103 10.4981 -1.3364 20 6 11.0482 11.5105 -0.2402 21 7 11.8216 11.4890 0.8248 22 14 11.1673 12.9267 -1.4525 23 1 10.2234 14.0011 -1.0526 24 1 12.5529 13.4607 -1.4553 25 1 10.8200 12.4439 -2.8132 26 6 7.1677 4.7866 1.0216 27 6 5.7350 4.5184 0.5470 28 1 5.0211 5.1821 1.0346 29 6 5.2558 3.0817 0.6138 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9877 0.9298 -0.0013 36 1 4.4057 2.8926 -2.0644 37 1 2.8124 3.6252 -1.7885 38 1 3.8861 5.6858 -0.9485 39 1 4.5178 5.2956 -2.5725 40 1 6.0554 7.0191 -0.8511 41 1 7.3441 6.2133 -1.7929 42 1 7.8276 8.7519 -0.1926 43 1 9.0674 7.8627 -1.1094 44 1 12.4530 12.2088 0.9803 45 1 7.8304 3.9721 0.7290 46 1 7.1928 4.9343 2.1013 47 1 5.9255 2.4393 0.0419 48 1 5.2189 2.7499 1.6514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572025283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -88.642761 kcal Electronic energy + Delta-G solvation = -26901.414450 eV Core-core repulsion = 23081.528129 eV Total energy + Delta-G solvation = -3819.886321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95067 -39.89577 -38.36091 -36.09601 -33.87297 -33.12598 -32.42181 -32.03543 -30.31693 -29.00512 -27.33835 -25.55143 -25.10766 -24.20295 -21.78913 -21.51530 -20.77993 -20.21611 -19.32200 -17.67887 -17.57730 -16.55889 -16.43907 -16.08639 -15.96770 -15.28524 -14.97336 -14.79797 -14.72264 -14.35372 -14.19551 -13.82684 -13.74134 -13.23238 -13.10596 -13.01129 -12.79496 -12.64613 -12.56353 -12.36465 -12.20055 -12.09046 -11.85789 -11.63921 -11.55250 -11.27096 -11.09484 -11.05465 -11.01528 -10.82044 -10.74873 -10.41018 -10.16816 -9.80691 -9.46241 -9.38363 -9.05913 -8.51361 -8.22513 -6.49452 -6.20937 -3.91526 2.25223 2.69176 2.90231 3.08843 3.22856 3.26051 3.30690 3.60411 3.95817 4.13153 4.21145 4.26022 4.34844 4.57166 4.59406 4.64099 4.78371 4.83198 4.96781 4.98232 5.03894 5.08844 5.11699 5.14190 5.18644 5.23047 5.34414 5.39687 5.46818 5.47717 5.54671 5.59577 5.63345 5.71327 5.72699 5.78039 5.81546 5.83568 5.88519 5.98067 6.06291 6.12487 6.15708 6.36846 7.06798 7.60166 7.67445 7.83298 8.35949 8.57140 9.24296 10.86503 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.001809 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.108820 B =15477.104932 C =16065.965167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.510 3.490 4 O -0.538 6.538 5 N -0.730 5.730 6 C 0.147 3.853 7 H 0.087 0.913 8 C -0.126 4.126 9 C -0.101 4.101 10 C -0.107 4.107 11 H 0.083 0.917 12 C 0.112 3.888 13 N -0.630 5.630 14 C 0.549 3.451 15 O -0.517 6.517 16 C -0.146 4.146 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.120 3.880 27 C -0.104 4.104 28 H 0.090 0.910 29 C -0.109 4.109 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.933 -25.099 -5.223 32.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.185 4.185 3 C 0.297 3.703 4 O -0.415 6.415 5 N -0.382 5.382 6 C 0.042 3.958 7 H 0.105 0.895 8 C -0.165 4.165 9 C -0.139 4.139 10 C -0.126 4.126 11 H 0.101 0.899 12 C -0.011 4.011 13 N -0.368 5.368 14 C 0.338 3.662 15 O -0.391 6.391 16 C -0.297 4.297 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.002 4.002 27 C -0.124 4.124 28 H 0.108 0.892 29 C -0.148 4.148 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.371 -24.555 -3.563 31.478 hybrid contribution -0.258 0.758 -2.068 2.218 sum -19.629 -23.797 -5.631 31.358 Atomic orbital electron populations 1.21530 0.92964 1.01628 1.03432 1.21645 0.98791 0.93771 1.04312 1.20838 0.82154 0.91915 0.75439 1.90720 1.55261 1.46562 1.48944 1.46178 1.07194 1.08841 1.75947 1.21022 0.95195 0.82647 0.96892 0.89525 1.21903 1.01706 0.96645 0.96252 1.21261 0.94160 0.96781 1.01694 1.21933 0.96336 0.97863 0.96426 0.89865 1.21684 0.93484 0.98006 0.87945 1.49123 1.39519 1.22928 1.25235 1.20024 0.77665 0.83018 0.85542 1.90707 1.47860 1.75766 1.24807 1.23507 1.06083 0.97323 1.02770 1.85391 1.43069 1.21665 1.33353 1.22863 1.26127 1.08374 1.10973 0.90936 1.24990 0.94650 0.97931 0.95980 1.70022 1.21681 1.32667 1.25906 0.86168 0.77605 0.81159 0.80573 1.20262 1.20740 1.19702 1.21876 0.93502 0.86730 0.98103 1.22079 0.97022 0.96793 0.96487 0.89193 1.21565 0.95078 0.96476 1.01650 0.91977 0.92069 0.91942 0.88961 0.88924 0.76589 0.91883 0.91211 0.91085 0.90833 0.91126 0.90966 0.89327 0.89353 0.92190 0.91467 0.90213 0.90744 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.20 37.16 0.34 -0.40 16 2 C -0.15 -0.61 6.42 -27.88 -0.18 -0.79 16 3 C 0.51 3.82 7.75 -10.98 -0.09 3.73 16 4 O -0.54 -6.40 15.58 5.56 0.09 -6.32 16 5 N -0.73 -3.97 5.06 -53.63 -0.27 -4.24 16 6 C 0.15 0.98 2.43 -67.75 -0.16 0.81 16 7 H 0.09 0.78 7.59 -51.93 -0.39 0.38 16 8 C -0.13 -0.86 5.32 -26.52 -0.14 -1.00 16 9 C -0.10 -0.70 5.74 -27.07 -0.16 -0.85 16 10 C -0.11 -0.83 2.27 -90.36 -0.21 -1.04 16 11 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 12 C 0.11 1.19 6.23 -3.43 -0.02 1.17 16 13 N -0.63 -9.06 3.38 -170.73 -0.58 -9.64 16 14 C 0.55 10.75 7.88 -10.98 -0.09 10.66 16 15 O -0.52 -12.16 16.16 5.56 0.09 -12.07 16 16 C -0.15 -3.05 5.36 36.01 0.19 -2.86 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 18 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.12 1.37 6.57 -2.70 -0.02 1.35 16 27 C -0.10 -0.84 2.52 -89.79 -0.23 -1.07 16 28 H 0.09 0.80 8.04 -51.93 -0.42 0.38 16 29 C -0.11 -0.63 5.15 -27.01 -0.14 -0.77 16 30 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.40 1.06 8.59 -40.82 -0.35 0.71 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 47 H 0.07 0.36 7.99 -51.93 -0.41 -0.06 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -36.85 398.83 -10.13 -46.98 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -8.28 Total: -3.65 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.69 Total: -4.10 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: -0.11 Total: -39.44 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.18 Total: -18.38 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.85 -10.13 -46.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572025283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.663 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds