Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99700 * 2 1 4 4 C 1.53001 * 109.46816 * 125.00139 * 3 2 1 5 5 C 1.50698 * 109.46978 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00049 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99691 * 180.02562 * 5 4 3 8 8 C 1.46925 * 120.63208 * 354.21294 * 7 5 4 9 9 C 1.53187 * 108.77564 * 126.41558 * 8 7 5 10 10 H 1.09003 * 109.49750 * 294.64766 * 9 8 7 11 11 N 1.46500 * 109.49913 * 174.58870 * 9 8 7 12 12 C 1.34775 * 120.00721 * 84.99632 * 11 9 8 13 13 O 1.21283 * 119.99439 * 0.02562 * 12 11 9 14 14 C 1.50693 * 120.00394 * 180.02562 * 12 11 9 15 15 S 1.81000 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00066 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00455 * 179.97438 * 16 15 14 19 19 N 1.31642 * 119.99665 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00507 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47250 * 120.00143 * 20 18 16 23 23 H 1.48501 * 109.46747 * 239.99785 * 20 18 16 24 24 C 1.53038 * 109.31564 * 54.63033 * 9 8 7 25 25 C 1.53036 * 109.53921 * 298.63708 * 24 9 8 26 26 C 1.46930 * 120.62684 * 174.23289 * 7 5 4 27 27 H 1.09005 * 109.58415 * 113.65960 * 26 7 5 28 28 C 1.53001 * 109.58788 * 353.37521 * 26 7 5 29 29 H 1.07999 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99404 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00467 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47230 * 5.00715 * 3 2 1 33 33 H 1.08999 * 109.47137 * 245.00031 * 3 2 1 34 34 H 1.09005 * 109.47061 * 60.00067 * 4 3 2 35 35 H 1.09003 * 109.47168 * 300.00384 * 4 3 2 36 36 H 1.08998 * 109.58817 * 6.62720 * 8 7 5 37 37 H 1.09000 * 109.70401 * 246.26971 * 8 7 5 38 38 H 0.97000 * 119.99707 * 264.99914 * 11 9 8 39 39 H 1.08997 * 109.47306 * 299.99737 * 14 12 11 40 40 H 1.09001 * 109.47301 * 60.00236 * 14 12 11 41 41 H 0.97001 * 119.99744 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.45938 * 58.65896 * 24 9 8 43 43 H 1.09007 * 109.46040 * 178.60878 * 24 9 8 44 44 H 1.08996 * 109.49624 * 301.41056 * 25 24 9 45 45 H 1.09005 * 109.52502 * 181.32976 * 25 24 9 46 46 H 1.09002 * 109.46678 * 65.79585 * 28 26 7 47 47 H 1.08998 * 109.46745 * 185.79892 * 28 26 7 48 48 H 1.09000 * 109.46696 * 305.79359 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7889 2.6380 1.1813 6 8 3.5704 3.4644 0.3210 7 7 4.7061 2.8865 2.1371 8 6 4.8927 1.9532 3.2564 9 6 6.3731 1.5674 3.3351 10 1 6.6509 1.0068 2.4424 11 7 6.6004 0.7399 4.5224 12 6 6.3902 -0.5902 4.4673 13 8 6.0133 -1.1022 3.4344 14 6 6.6234 -1.4413 5.6888 15 16 6.2562 -3.1702 5.2987 16 6 6.6041 -3.9160 6.8566 17 1 6.9356 -3.3071 7.6848 18 6 6.4512 -5.2858 7.0200 19 7 6.0457 -6.0277 6.0110 20 14 6.8194 -6.0764 8.6719 21 1 7.2550 -5.0325 9.6341 22 1 5.5960 -6.7437 9.1850 23 1 7.9004 -7.0815 8.5096 24 6 7.2229 2.8368 3.4268 25 6 7.0112 3.6863 2.1716 26 6 5.5381 4.0963 2.0797 27 1 5.2866 4.7525 2.9130 28 6 5.2904 4.8269 0.7585 29 1 -0.5399 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4773 1.2355 2.1130 36 1 4.2906 1.0598 3.0915 37 1 4.5898 2.4312 4.1879 38 1 6.9021 1.1493 5.3484 39 1 7.6640 -1.3520 6.0006 40 1 5.9721 -1.1051 6.4956 41 1 5.9392 -6.9851 6.1251 42 1 6.9275 3.4088 4.3065 43 1 8.2753 2.5644 3.5078 44 1 7.2831 3.1063 1.2897 45 1 7.6345 4.5789 2.2264 46 1 4.2652 5.1966 0.7344 47 1 5.9812 5.6656 0.6721 48 1 5.4483 4.1391 -0.0722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572609429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -54.759533 kcal Electronic energy + Delta-G solvation = -27463.317928 eV Core-core repulsion = 23644.900894 eV Total energy + Delta-G solvation = -3818.417034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91539 -39.38021 -37.61826 -35.61590 -34.57422 -33.41849 -32.46938 -31.67073 -30.51231 -29.10602 -27.08531 -25.54038 -25.12582 -24.43790 -22.18799 -21.19633 -20.40352 -19.87472 -19.06635 -17.91210 -17.13031 -16.64439 -16.37925 -15.89079 -15.82803 -15.24503 -15.00775 -14.84264 -14.60180 -14.33455 -14.08742 -13.98748 -13.82387 -13.30308 -13.13516 -13.04838 -12.67470 -12.59340 -12.47293 -12.34080 -12.13505 -12.03707 -11.50850 -11.34138 -11.29014 -11.16726 -11.11190 -11.10345 -11.06412 -10.94956 -10.78008 -9.85175 -9.56639 -9.50392 -9.32366 -9.14932 -9.10902 -8.67033 -8.29042 -6.55064 -6.26175 -3.96970 2.14947 2.45866 2.64934 2.95559 3.02648 3.18536 3.25383 3.29498 3.62720 4.16066 4.32480 4.34609 4.48170 4.58015 4.73455 4.80392 4.92241 4.96166 5.02397 5.05331 5.09402 5.09843 5.19713 5.22799 5.29826 5.39670 5.45251 5.50462 5.55900 5.60327 5.68530 5.70299 5.72677 5.81464 5.85087 5.89834 5.99788 6.03011 6.07429 6.12504 6.41306 6.51994 6.54142 6.66014 7.18484 7.55518 7.58262 8.03307 8.31067 8.48529 9.19594 10.81233 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002642 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.740601 B =10597.150937 C =12672.739536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.075 4.075 4 C -0.142 4.142 5 C 0.521 3.479 6 O -0.536 6.536 7 N -0.609 5.609 8 C 0.095 3.905 9 C 0.134 3.866 10 H 0.093 0.907 11 N -0.734 5.734 12 C 0.533 3.467 13 O -0.515 6.515 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.127 4.127 25 C -0.127 4.127 26 C 0.141 3.859 27 H 0.071 0.929 28 C -0.138 4.138 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 21.387 -6.583 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C -0.113 4.113 4 C -0.182 4.182 5 C 0.310 3.690 6 O -0.413 6.413 7 N -0.343 5.343 8 C -0.030 4.030 9 C 0.027 3.973 10 H 0.111 0.889 11 N -0.388 5.388 12 C 0.320 3.680 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.166 4.166 25 C -0.166 4.166 26 C 0.038 3.962 27 H 0.089 0.911 28 C -0.195 4.195 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.014 20.783 -8.839 22.784 hybrid contribution 0.938 0.058 2.924 3.072 sum -2.076 20.841 -5.915 21.763 Atomic orbital electron populations 1.23853 0.95954 1.01766 1.01613 1.23031 0.96155 0.98581 0.99415 1.20480 0.97598 0.95377 0.97841 1.21752 0.99339 0.95943 1.01170 1.20738 0.79166 0.88752 0.80347 1.90720 1.65575 1.47132 1.37914 1.48135 1.37682 1.23252 1.25252 1.22219 0.97665 0.93739 0.89341 1.21172 0.94019 0.91616 0.90444 0.88891 1.46026 1.71231 1.07406 1.14137 1.20380 0.76109 0.81490 0.90062 1.90704 1.44108 1.72321 1.31711 1.23537 1.04994 1.03800 0.98162 1.85392 1.88066 0.91638 1.18183 1.22897 1.52681 0.95366 0.97421 0.90878 1.24997 0.94616 0.96170 0.97812 1.70028 1.43433 1.06253 1.30520 0.86116 0.78162 0.79105 0.82112 1.19619 1.20549 1.20559 1.21816 1.00599 0.95369 0.98770 1.21978 0.95967 1.00370 0.98310 1.21318 0.89609 0.85580 0.99692 0.91089 1.22195 1.02523 0.99242 0.95510 0.88749 0.88424 0.86951 0.91001 0.90340 0.88077 0.88853 0.88557 0.90984 0.76581 0.89174 0.89143 0.92208 0.91118 0.90590 0.91022 0.90151 0.90252 0.93843 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 14.32 29.01 0.42 -1.43 16 2 C -0.15 -1.57 9.52 -36.02 -0.34 -1.92 16 3 C -0.08 -0.79 4.95 -27.88 -0.14 -0.92 16 4 C -0.14 -1.50 4.04 -27.88 -0.11 -1.61 16 5 C 0.52 6.05 7.50 -10.98 -0.08 5.97 16 6 O -0.54 -7.28 11.55 5.56 0.06 -7.21 16 7 N -0.61 -6.15 2.97 -165.22 -0.49 -6.65 16 8 C 0.09 0.94 5.92 -3.71 -0.02 0.92 16 9 C 0.13 1.37 2.60 -67.81 -0.18 1.19 16 10 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 11 N -0.73 -8.30 5.08 -53.69 -0.27 -8.57 16 12 C 0.53 8.89 7.81 -10.99 -0.09 8.80 16 13 O -0.51 -10.53 15.53 5.55 0.09 -10.44 16 14 C -0.15 -2.88 6.16 36.00 0.22 -2.66 16 15 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 16 C -0.54 -14.81 9.50 30.94 0.29 -14.51 16 17 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 20 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.13 -0.94 5.35 -26.69 -0.14 -1.08 16 25 C -0.13 -0.94 5.37 -26.61 -0.14 -1.08 16 26 C 0.14 1.23 3.49 -67.60 -0.24 0.99 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 C -0.14 -1.33 7.61 37.16 0.28 -1.05 16 29 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 30 H 0.10 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 33 H 0.08 0.86 8.10 -51.93 -0.42 0.43 16 34 H 0.10 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.09 0.92 7.71 -51.93 -0.40 0.52 16 36 H 0.10 1.09 5.93 -51.93 -0.31 0.79 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.37 8.60 -40.82 -0.35 3.02 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.91 6.54 -51.93 -0.34 0.57 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.75 6.96 -51.93 -0.36 0.39 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -33.39 399.88 -9.45 -42.84 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.99 Total: 3.16 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.36 Total: -6.46 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.03 Total: -40.09 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.15 Total: -17.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.39 -9.45 -42.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.920 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds