Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99700 * 2 1 4 4 C 1.53001 * 109.46816 * 125.00139 * 3 2 1 5 5 C 1.50698 * 109.46978 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00049 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99691 * 180.02562 * 5 4 3 8 8 C 1.46925 * 120.63208 * 354.21294 * 7 5 4 9 9 C 1.53187 * 108.77564 * 126.41558 * 8 7 5 10 10 H 1.09003 * 109.49750 * 294.64766 * 9 8 7 11 11 N 1.46500 * 109.49913 * 174.58870 * 9 8 7 12 12 C 1.34775 * 120.00721 * 84.99632 * 11 9 8 13 13 O 1.21283 * 119.99439 * 0.02562 * 12 11 9 14 14 C 1.50693 * 120.00394 * 180.02562 * 12 11 9 15 15 S 1.81000 * 109.47108 * 179.97438 * 14 12 11 16 16 C 1.76194 * 100.00066 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00455 * 179.97438 * 16 15 14 19 19 N 1.31642 * 119.99665 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00507 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47250 * 120.00143 * 20 18 16 23 23 H 1.48501 * 109.46747 * 239.99785 * 20 18 16 24 24 C 1.53038 * 109.31564 * 54.63033 * 9 8 7 25 25 C 1.53036 * 109.53921 * 298.63708 * 24 9 8 26 26 C 1.46930 * 120.62684 * 174.23289 * 7 5 4 27 27 H 1.09005 * 109.58415 * 113.65960 * 26 7 5 28 28 C 1.53001 * 109.58788 * 353.37521 * 26 7 5 29 29 H 1.07999 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99404 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00467 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47230 * 5.00715 * 3 2 1 33 33 H 1.08999 * 109.47137 * 245.00031 * 3 2 1 34 34 H 1.09005 * 109.47061 * 60.00067 * 4 3 2 35 35 H 1.09003 * 109.47168 * 300.00384 * 4 3 2 36 36 H 1.08998 * 109.58817 * 6.62720 * 8 7 5 37 37 H 1.09000 * 109.70401 * 246.26971 * 8 7 5 38 38 H 0.97000 * 119.99707 * 264.99914 * 11 9 8 39 39 H 1.08997 * 109.47306 * 299.99737 * 14 12 11 40 40 H 1.09001 * 109.47301 * 60.00236 * 14 12 11 41 41 H 0.97001 * 119.99744 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.45938 * 58.65896 * 24 9 8 43 43 H 1.09007 * 109.46040 * 178.60878 * 24 9 8 44 44 H 1.08996 * 109.49624 * 301.41056 * 25 24 9 45 45 H 1.09005 * 109.52502 * 181.32976 * 25 24 9 46 46 H 1.09002 * 109.46678 * 65.79585 * 28 26 7 47 47 H 1.08998 * 109.46745 * 185.79892 * 28 26 7 48 48 H 1.09000 * 109.46696 * 305.79359 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7889 2.6380 1.1813 6 8 3.5704 3.4644 0.3210 7 7 4.7061 2.8865 2.1371 8 6 4.8927 1.9532 3.2564 9 6 6.3731 1.5674 3.3351 10 1 6.6509 1.0068 2.4424 11 7 6.6004 0.7399 4.5224 12 6 6.3902 -0.5902 4.4673 13 8 6.0133 -1.1022 3.4344 14 6 6.6234 -1.4413 5.6888 15 16 6.2562 -3.1702 5.2987 16 6 6.6041 -3.9160 6.8566 17 1 6.9356 -3.3071 7.6848 18 6 6.4512 -5.2858 7.0200 19 7 6.0457 -6.0277 6.0110 20 14 6.8194 -6.0764 8.6719 21 1 7.2550 -5.0325 9.6341 22 1 5.5960 -6.7437 9.1850 23 1 7.9004 -7.0815 8.5096 24 6 7.2229 2.8368 3.4268 25 6 7.0112 3.6863 2.1716 26 6 5.5381 4.0963 2.0797 27 1 5.2866 4.7525 2.9130 28 6 5.2904 4.8269 0.7585 29 1 -0.5399 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4773 1.2355 2.1130 36 1 4.2906 1.0598 3.0915 37 1 4.5898 2.4312 4.1879 38 1 6.9021 1.1493 5.3484 39 1 7.6640 -1.3520 6.0006 40 1 5.9721 -1.1051 6.4956 41 1 5.9392 -6.9851 6.1251 42 1 6.9275 3.4088 4.3065 43 1 8.2753 2.5644 3.5078 44 1 7.2831 3.1063 1.2897 45 1 7.6345 4.5789 2.2264 46 1 4.2652 5.1966 0.7344 47 1 5.9812 5.6656 0.6721 48 1 5.4483 4.1391 -0.0722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572609429.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -75.826654 kcal Electronic energy + Delta-G solvation = -27464.231466 eV Core-core repulsion = 23644.900894 eV Total energy + Delta-G solvation = -3819.330573 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79410 -40.58871 -38.57114 -36.48691 -35.62406 -34.56382 -34.19334 -32.69034 -31.39087 -30.35217 -28.02970 -27.58645 -25.97764 -25.23774 -23.02677 -21.98867 -21.62542 -20.70304 -19.99108 -19.72794 -18.07040 -17.80227 -17.47988 -16.92163 -16.85697 -16.72158 -16.31795 -16.04194 -15.78088 -15.45246 -15.16456 -14.82036 -14.75508 -14.58393 -14.45358 -14.02401 -13.83399 -13.51376 -13.46828 -13.20588 -13.14113 -13.12931 -12.96038 -12.90791 -12.58825 -12.33489 -12.06359 -12.03165 -11.99105 -11.91456 -11.74391 -11.62684 -11.14404 -10.92026 -10.42262 -10.30219 -10.23611 -10.05105 -9.53766 -8.63301 -8.33391 -6.10181 1.28084 1.34190 1.42157 1.47618 1.53337 1.59120 1.63736 1.89295 2.28072 2.36296 3.01173 3.33324 3.48097 3.60641 3.78810 3.83252 3.93629 3.94859 4.07914 4.10182 4.20409 4.24440 4.34718 4.36472 4.40325 4.42614 4.56343 4.61272 4.63595 4.69018 4.79495 4.85056 4.86571 4.98846 5.02657 5.07308 5.14299 5.15703 5.29451 5.34410 5.44239 5.47336 5.67989 5.73500 5.84863 6.21698 6.30930 6.53482 7.08736 7.13717 7.27092 8.75754 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002642 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.740601 B =10597.150937 C =12672.739536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C -0.068 4.068 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.559 6.559 7 N -0.606 5.606 8 C 0.098 3.902 9 C 0.135 3.865 10 H 0.063 0.937 11 N -0.705 5.705 12 C 0.537 3.463 13 O -0.560 6.560 14 C -0.130 4.130 15 S -0.150 6.150 16 C -0.544 4.544 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.256 1.256 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.118 4.118 25 C -0.121 4.121 26 C 0.136 3.864 27 H 0.092 0.908 28 C -0.130 4.130 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.420 0.580 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.270 0.730 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.107 0.893 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 23.641 -4.048 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C -0.106 4.106 4 C -0.177 4.177 5 C 0.305 3.695 6 O -0.439 6.439 7 N -0.339 5.339 8 C -0.027 4.027 9 C 0.029 3.971 10 H 0.081 0.919 11 N -0.359 5.359 12 C 0.322 3.678 13 O -0.437 6.437 14 C -0.282 4.282 15 S 0.077 5.923 16 C -0.691 4.691 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.156 4.156 25 C -0.160 4.160 26 C 0.034 3.966 27 H 0.110 0.890 28 C -0.187 4.187 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.258 0.742 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.126 0.874 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.028 23.097 -6.269 24.018 hybrid contribution 0.639 -0.510 2.076 2.231 sum -1.389 22.587 -4.193 23.014 Atomic orbital electron populations 1.24032 0.95660 1.02682 1.00023 1.23025 0.96603 0.98236 1.00898 1.20387 0.97395 0.95493 0.97321 1.21705 0.99155 0.95273 1.01596 1.20876 0.79525 0.88715 0.80393 1.90720 1.66490 1.47846 1.38809 1.48178 1.37295 1.23683 1.24789 1.22184 0.97072 0.93332 0.90068 1.21243 0.94994 0.92318 0.88567 0.91906 1.45693 1.69263 1.05475 1.15478 1.20064 0.76049 0.82994 0.88652 1.90705 1.46496 1.73548 1.32998 1.23379 1.06490 0.98609 0.99690 1.85575 1.88787 0.98388 1.19576 1.23235 1.52311 0.95969 0.97624 0.89892 1.26100 0.94232 0.96878 1.01976 1.70191 1.44870 1.06604 1.33123 0.84935 0.78001 0.78167 0.77040 1.17945 1.20073 1.20136 1.21792 1.00340 0.93664 0.99786 1.21953 0.95212 1.01201 0.97649 1.21532 0.90223 0.85092 0.99748 0.88992 1.22046 1.01893 0.99433 0.95323 0.87793 0.87527 0.87468 0.91090 0.91334 0.89140 0.88125 0.90447 0.88669 0.74221 0.87259 0.86983 0.92088 0.88407 0.89763 0.92729 0.87437 0.92213 0.91604 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 14.32 67.78 0.97 -2.53 16 2 C -0.17 -3.60 9.52 25.64 0.24 -3.35 16 3 C -0.07 -1.50 4.95 29.85 0.15 -1.35 16 4 C -0.14 -3.05 4.04 29.85 0.12 -2.93 16 5 C 0.52 12.22 7.50 87.66 0.66 12.88 16 6 O -0.56 -15.65 11.55 -3.01 -0.03 -15.68 16 7 N -0.61 -11.70 2.97 -795.03 -2.36 -14.06 16 8 C 0.10 1.79 5.92 86.36 0.51 2.30 16 9 C 0.13 2.51 2.60 45.07 0.12 2.62 16 10 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 11 N -0.70 -14.20 5.08 -442.18 -2.25 -16.45 16 12 C 0.54 17.40 7.81 87.66 0.68 18.09 16 13 O -0.56 -23.48 15.53 -3.04 -0.05 -23.52 16 14 C -0.13 -4.70 6.16 71.23 0.44 -4.26 16 15 S -0.15 -7.98 20.57 -56.49 -1.16 -9.15 16 16 C -0.54 -30.03 9.50 67.95 0.65 -29.38 16 17 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 18 C 0.01 0.71 5.49 84.86 0.47 1.18 16 19 N -0.91 -54.97 13.22 21.65 0.29 -54.69 16 20 Si 1.00 42.64 29.55 68.60 2.03 44.66 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 C -0.12 -1.30 5.35 30.62 0.16 -1.14 16 25 C -0.12 -1.44 5.37 30.67 0.16 -1.28 16 26 C 0.14 2.06 3.49 44.97 0.16 2.22 16 27 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 28 C -0.13 -2.39 7.61 71.98 0.55 -1.85 16 29 H 0.10 1.73 7.84 -2.91 -0.02 1.71 16 30 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.11 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.07 1.55 7.75 -2.39 -0.02 1.53 16 33 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.09 2.19 7.93 -2.38 -0.02 2.17 16 35 H 0.10 2.05 7.71 -2.39 -0.02 2.03 16 36 H 0.08 1.76 5.93 -2.39 -0.01 1.74 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.42 5.36 8.60 -92.71 -0.80 4.56 16 39 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 40 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.08 0.87 8.14 -2.38 -0.02 0.86 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.06 1.35 6.54 -2.39 -0.02 1.33 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.04 0.94 6.96 -2.39 -0.02 0.93 16 Total: -1.00 -76.10 399.88 2.64 -73.46 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.15 Total: 24.21 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 6.04 Total: -8.79 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -4.32 Total: -85.19 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.08 Total: -39.20 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.15 kcal Total: -76.10 2.64 -73.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609429.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.367 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds