Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00125 * 2 1 4 4 C 1.52998 * 109.46759 * 124.99890 * 3 2 1 5 5 C 1.50699 * 109.46759 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00447 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00060 * 180.02562 * 5 4 3 8 8 C 1.46924 * 120.62898 * 5.05610 * 7 5 4 9 9 C 1.53199 * 108.77494 * 126.41346 * 8 7 5 10 10 H 1.09000 * 109.52138 * 174.60594 * 9 8 7 11 11 N 1.46500 * 109.49700 * 294.68586 * 9 8 7 12 12 C 1.34781 * 119.99662 * 274.56305 * 11 9 8 13 13 O 1.21282 * 120.00390 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99554 * 179.97438 * 12 11 9 15 15 S 1.81011 * 109.46826 * 179.97438 * 14 12 11 16 16 C 1.76196 * 99.99896 * 179.97438 * 15 14 12 17 17 H 1.08008 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99613 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47446 * 90.00252 * 20 18 16 22 22 H 1.48501 * 109.47116 * 210.00503 * 20 18 16 23 23 H 1.48507 * 109.47121 * 330.00168 * 20 18 16 24 24 C 1.53034 * 109.31083 * 54.63512 * 9 8 7 25 25 C 1.53042 * 109.54127 * 298.63340 * 24 9 8 26 26 C 1.46922 * 120.63170 * 185.08078 * 7 5 4 27 27 H 1.08997 * 109.58802 * 113.80088 * 26 7 5 28 28 C 1.53001 * 109.70732 * 353.44188 * 26 7 5 29 29 H 1.07996 * 120.00188 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00552 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99813 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46945 * 5.00422 * 3 2 1 33 33 H 1.08993 * 109.47051 * 245.00319 * 3 2 1 34 34 H 1.09002 * 109.46957 * 60.00540 * 4 3 2 35 35 H 1.08993 * 109.47690 * 300.00038 * 4 3 2 36 36 H 1.09003 * 109.58894 * 6.63111 * 8 7 5 37 37 H 1.08997 * 109.58949 * 246.20033 * 8 7 5 38 38 H 0.97000 * 120.00259 * 94.83827 * 11 9 8 39 39 H 1.08990 * 109.47402 * 299.99788 * 14 12 11 40 40 H 1.08993 * 109.47080 * 60.00356 * 14 12 11 41 41 H 0.97001 * 119.99847 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.46164 * 58.65453 * 24 9 8 43 43 H 1.09000 * 109.46205 * 178.62658 * 24 9 8 44 44 H 1.08997 * 109.49764 * 181.31400 * 25 24 9 45 45 H 1.08998 * 109.49755 * 301.38729 * 25 24 9 46 46 H 1.08998 * 109.47090 * 304.25880 * 28 26 7 47 47 H 1.09006 * 109.46502 * 64.25236 * 28 26 7 48 48 H 1.08996 * 109.47237 * 184.25296 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7889 2.6378 1.1813 6 8 3.5705 3.4642 0.3210 7 7 4.7061 2.8864 2.1371 8 6 5.0618 1.8538 3.1199 9 6 6.5821 1.6655 3.1090 10 1 6.8689 0.9721 3.8997 11 7 6.9988 1.1273 1.8117 12 6 6.9709 -0.2025 1.5935 13 8 6.6013 -0.9535 2.4712 14 6 7.3990 -0.7561 0.2588 15 16 7.2504 -2.5600 0.2782 16 6 7.7978 -2.9296 -1.3553 17 1 8.0951 -2.1309 -2.0189 18 6 7.8478 -4.2471 -1.7890 19 7 7.4860 -5.2204 -0.9801 20 14 8.4288 -4.6390 -3.5205 21 1 9.8992 -4.8460 -3.5144 22 1 7.7571 -5.8735 -4.0005 23 1 8.0916 -3.5091 -4.4234 24 6 7.2612 3.0167 3.3433 25 6 6.8858 3.9807 2.2154 26 6 5.3689 4.1952 2.2163 27 1 5.0719 4.7003 3.1354 28 6 4.9711 5.0488 1.0104 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9313 34 1 3.7399 0.5064 1.0920 35 1 2.4773 1.2355 2.1130 36 1 4.5754 0.9148 2.8557 37 1 4.7397 2.1679 4.1127 38 1 7.2986 1.7275 1.1112 39 1 6.7620 -0.3471 -0.5254 40 1 8.4355 -0.4793 0.0663 41 1 7.5206 -6.1411 -1.2833 42 1 6.9316 3.4282 4.2974 43 1 8.3426 2.8816 3.3603 44 1 7.3883 4.9354 2.3705 45 1 7.1934 3.5586 1.2587 46 1 5.2061 4.5116 0.0916 47 1 3.9012 5.2540 1.0478 48 1 5.5224 5.9888 1.0329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572609430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = -51.562362 kcal Electronic energy + Delta-G solvation = -28332.017268 eV Core-core repulsion = 24513.738874 eV Total energy + Delta-G solvation = -3818.278394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98329 -39.28753 -37.57560 -35.52752 -34.28178 -33.39343 -32.44940 -31.62881 -30.47854 -28.96258 -27.34252 -25.50817 -25.11096 -24.40120 -22.16759 -21.24996 -20.36763 -19.78451 -18.73839 -17.95236 -16.95388 -16.72991 -16.27208 -15.93498 -15.59389 -15.37923 -14.92558 -14.81889 -14.50027 -14.19350 -14.07432 -13.92776 -13.70313 -13.35379 -13.13531 -13.03176 -12.59554 -12.53425 -12.50431 -12.33080 -12.11041 -11.96161 -11.65800 -11.31702 -11.20794 -11.09191 -11.07635 -11.04164 -11.03254 -10.82884 -10.75843 -9.83707 -9.47467 -9.44071 -9.24922 -9.09730 -9.07882 -8.55983 -8.27458 -6.52698 -6.23944 -3.94506 2.23753 2.54192 2.79929 2.99301 3.00867 3.21270 3.26910 3.30979 3.66958 4.18653 4.30174 4.38147 4.51346 4.60780 4.74568 4.88454 4.95624 4.99265 5.04412 5.11675 5.13399 5.17132 5.22522 5.29033 5.32013 5.39876 5.49150 5.53337 5.57835 5.64493 5.68756 5.76152 5.76903 5.83585 5.85002 5.95323 6.03079 6.08170 6.11019 6.19914 6.48950 6.59311 6.63603 6.75041 7.24197 7.57886 7.63501 8.10728 8.33326 8.52959 9.21950 10.83445 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.003483 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.577678 B = 8036.617102 C = 9638.605751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.141 4.141 5 C 0.520 3.480 6 O -0.536 6.536 7 N -0.608 5.608 8 C 0.093 3.907 9 C 0.132 3.868 10 H 0.102 0.898 11 N -0.730 5.730 12 C 0.533 3.467 13 O -0.518 6.518 14 C -0.155 4.155 15 S -0.057 6.057 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.868 5.868 20 Si 0.917 3.083 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.127 4.127 25 C -0.134 4.134 26 C 0.143 3.857 27 H 0.070 0.930 28 C -0.135 4.135 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.397 0.603 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.126 19.865 8.566 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.113 4.113 4 C -0.180 4.180 5 C 0.310 3.690 6 O -0.413 6.413 7 N -0.342 5.342 8 C -0.031 4.031 9 C 0.026 3.974 10 H 0.120 0.880 11 N -0.385 5.385 12 C 0.319 3.681 13 O -0.392 6.392 14 C -0.306 4.306 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.503 5.503 20 Si 0.743 3.257 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.165 4.165 25 C -0.172 4.172 26 C 0.040 3.960 27 H 0.088 0.912 28 C -0.192 4.192 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.893 18.855 9.602 22.253 hybrid contribution 1.087 0.721 -2.324 2.666 sum -5.805 19.576 7.277 21.677 Atomic orbital electron populations 1.23819 0.95927 1.01626 1.02164 1.23068 0.96138 0.98742 0.98896 1.20474 0.97543 0.95298 0.98001 1.21728 0.99187 0.96084 1.01034 1.20714 0.79145 0.88851 0.80326 1.90739 1.66337 1.47374 1.36876 1.48113 1.40884 1.13877 1.31331 1.22269 0.96205 0.92101 0.92521 1.21229 0.93068 0.95494 0.87590 0.88018 1.46117 1.69326 1.07388 1.15671 1.20340 0.76800 0.81422 0.89531 1.90698 1.45682 1.57558 1.45266 1.23541 1.04088 1.06651 0.96271 1.85334 1.86878 0.91360 1.19491 1.22864 1.51277 0.95275 0.98995 0.90988 1.24970 0.94876 0.95159 0.98435 1.70009 1.44740 0.99928 1.35617 0.86190 0.78833 0.78056 0.82579 1.20260 1.20719 1.19672 1.21812 1.01277 0.94102 0.99323 1.22030 0.95634 1.00125 0.99427 1.21279 0.91656 0.83271 0.99798 0.91202 1.22195 1.02057 0.97490 0.97492 0.88862 0.88488 0.86741 0.91107 0.90188 0.88349 0.89042 0.88555 0.90465 0.76755 0.89392 0.89344 0.92180 0.90247 0.90644 0.90382 0.91370 0.90861 0.91105 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 14.32 29.02 0.42 -1.65 16 2 C -0.15 -1.74 9.52 -36.03 -0.34 -2.08 16 3 C -0.08 -0.89 4.95 -27.88 -0.14 -1.02 16 4 C -0.14 -1.58 4.08 -27.88 -0.11 -1.70 16 5 C 0.52 6.27 7.61 -10.98 -0.08 6.19 16 6 O -0.54 -7.64 11.40 5.56 0.06 -7.58 16 7 N -0.61 -6.03 2.89 -165.22 -0.48 -6.51 16 8 C 0.09 0.87 5.93 -3.71 -0.02 0.85 16 9 C 0.13 1.29 2.82 -67.81 -0.19 1.10 16 10 H 0.10 1.12 7.57 -51.93 -0.39 0.72 16 11 N -0.73 -8.87 4.91 -53.69 -0.26 -9.13 16 12 C 0.53 9.12 7.82 -10.98 -0.09 9.03 16 13 O -0.52 -10.59 15.52 5.56 0.09 -10.50 16 14 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 15 S -0.06 -1.50 20.57 -107.50 -2.21 -3.72 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 17 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 20 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.13 -0.89 5.58 -26.69 -0.15 -1.04 16 25 C -0.13 -0.97 5.21 -26.61 -0.14 -1.10 16 26 C 0.14 1.23 3.49 -67.60 -0.24 0.99 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 C -0.14 -1.36 7.60 37.16 0.28 -1.07 16 29 H 0.09 0.88 7.84 -52.49 -0.41 0.47 16 30 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.07 0.82 7.75 -51.93 -0.40 0.41 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.10 1.23 7.48 -51.93 -0.39 0.85 16 35 H 0.09 0.90 8.11 -51.93 -0.42 0.47 16 36 H 0.10 1.06 5.96 -51.93 -0.31 0.75 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.40 4.28 6.77 -40.82 -0.28 4.01 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.56 6.40 -51.93 -0.33 0.23 16 46 H 0.07 0.89 6.74 -51.93 -0.35 0.54 16 47 H 0.07 0.83 6.77 -51.93 -0.35 0.48 16 48 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -33.34 396.31 -9.33 -42.67 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.83 Total: 4.68 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.38 Total: -7.07 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.01 Total: -40.72 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.15 Total: -18.08 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.34 -9.33 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.894 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds