Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00125 * 2 1 4 4 C 1.52998 * 109.46759 * 124.99890 * 3 2 1 5 5 C 1.50699 * 109.46759 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00447 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00060 * 180.02562 * 5 4 3 8 8 C 1.46924 * 120.62898 * 5.05610 * 7 5 4 9 9 C 1.53199 * 108.77494 * 126.41346 * 8 7 5 10 10 H 1.09000 * 109.52138 * 174.60594 * 9 8 7 11 11 N 1.46500 * 109.49700 * 294.68586 * 9 8 7 12 12 C 1.34781 * 119.99662 * 274.56305 * 11 9 8 13 13 O 1.21282 * 120.00390 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99554 * 179.97438 * 12 11 9 15 15 S 1.81011 * 109.46826 * 179.97438 * 14 12 11 16 16 C 1.76196 * 99.99896 * 179.97438 * 15 14 12 17 17 H 1.08008 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99613 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47446 * 90.00252 * 20 18 16 22 22 H 1.48501 * 109.47116 * 210.00503 * 20 18 16 23 23 H 1.48507 * 109.47121 * 330.00168 * 20 18 16 24 24 C 1.53034 * 109.31083 * 54.63512 * 9 8 7 25 25 C 1.53042 * 109.54127 * 298.63340 * 24 9 8 26 26 C 1.46922 * 120.63170 * 185.08078 * 7 5 4 27 27 H 1.08997 * 109.58802 * 113.80088 * 26 7 5 28 28 C 1.53001 * 109.70732 * 353.44188 * 26 7 5 29 29 H 1.07996 * 120.00188 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00552 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99813 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46945 * 5.00422 * 3 2 1 33 33 H 1.08993 * 109.47051 * 245.00319 * 3 2 1 34 34 H 1.09002 * 109.46957 * 60.00540 * 4 3 2 35 35 H 1.08993 * 109.47690 * 300.00038 * 4 3 2 36 36 H 1.09003 * 109.58894 * 6.63111 * 8 7 5 37 37 H 1.08997 * 109.58949 * 246.20033 * 8 7 5 38 38 H 0.97000 * 120.00259 * 94.83827 * 11 9 8 39 39 H 1.08990 * 109.47402 * 299.99788 * 14 12 11 40 40 H 1.08993 * 109.47080 * 60.00356 * 14 12 11 41 41 H 0.97001 * 119.99847 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.46164 * 58.65453 * 24 9 8 43 43 H 1.09000 * 109.46205 * 178.62658 * 24 9 8 44 44 H 1.08997 * 109.49764 * 181.31400 * 25 24 9 45 45 H 1.08998 * 109.49755 * 301.38729 * 25 24 9 46 46 H 1.08998 * 109.47090 * 304.25880 * 28 26 7 47 47 H 1.09006 * 109.46502 * 64.25236 * 28 26 7 48 48 H 1.08996 * 109.47237 * 184.25296 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7889 2.6378 1.1813 6 8 3.5705 3.4642 0.3210 7 7 4.7061 2.8864 2.1371 8 6 5.0618 1.8538 3.1199 9 6 6.5821 1.6655 3.1090 10 1 6.8689 0.9721 3.8997 11 7 6.9988 1.1273 1.8117 12 6 6.9709 -0.2025 1.5935 13 8 6.6013 -0.9535 2.4712 14 6 7.3990 -0.7561 0.2588 15 16 7.2504 -2.5600 0.2782 16 6 7.7978 -2.9296 -1.3553 17 1 8.0951 -2.1309 -2.0189 18 6 7.8478 -4.2471 -1.7890 19 7 7.4860 -5.2204 -0.9801 20 14 8.4288 -4.6390 -3.5205 21 1 9.8992 -4.8460 -3.5144 22 1 7.7571 -5.8735 -4.0005 23 1 8.0916 -3.5091 -4.4234 24 6 7.2612 3.0167 3.3433 25 6 6.8858 3.9807 2.2154 26 6 5.3689 4.1952 2.2163 27 1 5.0719 4.7003 3.1354 28 6 4.9711 5.0488 1.0104 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9313 34 1 3.7399 0.5064 1.0920 35 1 2.4773 1.2355 2.1130 36 1 4.5754 0.9148 2.8557 37 1 4.7397 2.1679 4.1127 38 1 7.2986 1.7275 1.1112 39 1 6.7620 -0.3471 -0.5254 40 1 8.4355 -0.4793 0.0663 41 1 7.5206 -6.1411 -1.2833 42 1 6.9316 3.4282 4.2974 43 1 8.3426 2.8816 3.3603 44 1 7.3883 4.9354 2.3705 45 1 7.1934 3.5586 1.2587 46 1 5.2061 4.5116 0.0916 47 1 3.9012 5.2540 1.0478 48 1 5.5224 5.9888 1.0329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572609430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -72.274851 kcal Electronic energy + Delta-G solvation = -28332.915429 eV Core-core repulsion = 24513.738874 eV Total energy + Delta-G solvation = -3819.176555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87855 -40.50802 -38.57274 -36.46318 -35.33392 -34.59306 -34.16981 -32.69611 -31.38688 -30.29105 -28.23143 -27.63892 -25.96673 -25.19712 -22.98179 -22.30024 -21.36933 -20.70361 -19.87787 -19.64327 -18.08939 -17.70868 -17.43804 -16.89304 -16.88715 -16.65518 -16.42702 -16.01734 -15.78396 -15.37971 -15.03470 -14.84695 -14.75578 -14.58886 -14.29368 -14.07601 -13.87329 -13.54070 -13.44630 -13.26742 -13.17368 -13.13246 -12.94246 -12.90544 -12.65119 -12.45796 -12.05482 -11.97817 -11.91784 -11.88737 -11.73729 -11.52853 -11.15284 -10.92201 -10.38757 -10.29345 -10.28488 -10.01547 -9.42720 -8.65603 -8.35887 -6.12617 1.26241 1.34316 1.40402 1.45434 1.56053 1.56967 1.65145 1.98883 2.25059 2.31611 2.98427 3.30906 3.46805 3.66594 3.81787 3.90581 3.93992 3.96407 4.02118 4.09874 4.23952 4.26415 4.36123 4.36999 4.41483 4.46420 4.48733 4.58567 4.65092 4.74396 4.85254 4.87216 4.87728 4.96556 5.03094 5.11243 5.14819 5.15955 5.34338 5.39467 5.40817 5.52307 5.73132 5.74546 5.84801 6.18565 6.35713 6.47555 7.06116 7.19890 7.22930 8.73081 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.003483 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.577678 B = 8036.617102 C = 9638.605751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.171 4.171 3 C -0.069 4.069 4 C -0.135 4.135 5 C 0.515 3.485 6 O -0.562 6.562 7 N -0.602 5.602 8 C 0.094 3.906 9 C 0.128 3.872 10 H 0.094 0.906 11 N -0.708 5.708 12 C 0.538 3.462 13 O -0.555 6.555 14 C -0.134 4.134 15 S -0.135 6.135 16 C -0.550 4.550 17 H 0.077 0.923 18 C 0.018 3.982 19 N -0.908 5.908 20 Si 0.993 3.007 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.116 4.116 25 C -0.129 4.129 26 C 0.139 3.861 27 H 0.093 0.907 28 C -0.127 4.127 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.407 0.593 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.271 0.729 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 22.185 8.985 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C -0.106 4.106 4 C -0.175 4.175 5 C 0.304 3.696 6 O -0.442 6.442 7 N -0.335 5.335 8 C -0.030 4.030 9 C 0.023 3.977 10 H 0.112 0.888 11 N -0.362 5.362 12 C 0.324 3.676 13 O -0.433 6.433 14 C -0.286 4.286 15 S 0.092 5.908 16 C -0.698 4.698 17 H 0.096 0.904 18 C -0.187 4.187 19 N -0.545 5.545 20 Si 0.815 3.185 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.154 4.154 25 C -0.167 4.167 26 C 0.037 3.963 27 H 0.111 0.889 28 C -0.184 4.184 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.244 0.756 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.278 21.229 10.042 24.309 hybrid contribution 0.857 0.125 -2.390 2.542 sum -5.420 21.354 7.652 23.322 Atomic orbital electron populations 1.24015 0.95427 1.02742 0.99872 1.23001 0.96713 0.98110 1.01050 1.20370 0.97466 0.95470 0.97317 1.21671 0.98870 0.95342 1.01600 1.20805 0.79613 0.88659 0.80474 1.90742 1.67342 1.48165 1.37962 1.48145 1.40142 1.14587 1.30649 1.22310 0.95625 0.91318 0.93699 1.21494 0.93725 0.96947 0.85566 0.88816 1.45937 1.67597 1.05529 1.17104 1.19889 0.76780 0.82871 0.88076 1.90689 1.47725 1.58873 1.45977 1.23390 1.05389 1.01303 0.98472 1.85414 1.87296 0.98176 1.19925 1.23194 1.51271 0.95909 0.99384 0.90447 1.26031 0.94729 0.94884 1.03057 1.70159 1.45974 1.00416 1.37936 0.85034 0.78573 0.78074 0.76827 1.19209 1.20145 1.18582 1.21793 1.01345 0.91853 1.00424 1.22014 0.94479 1.01328 0.98888 1.21476 0.92530 0.82269 0.99979 0.88931 1.22033 1.01036 0.98369 0.96997 0.87550 0.87490 0.88074 0.90823 0.92122 0.90037 0.87471 0.90495 0.87366 0.75613 0.88477 0.87821 0.91951 0.87600 0.89996 0.87959 0.92619 0.93545 0.93125 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 14.32 67.78 0.97 -2.73 16 2 C -0.17 -4.06 9.52 25.65 0.24 -3.82 16 3 C -0.07 -1.67 4.95 29.85 0.15 -1.52 16 4 C -0.14 -3.12 4.08 29.85 0.12 -3.00 16 5 C 0.52 12.31 7.61 87.66 0.67 12.98 16 6 O -0.56 -16.26 11.40 -3.03 -0.03 -16.30 16 7 N -0.60 -10.97 2.89 -795.01 -2.30 -13.26 16 8 C 0.09 1.58 5.93 86.37 0.51 2.09 16 9 C 0.13 2.22 2.82 45.07 0.13 2.35 16 10 H 0.09 1.89 7.57 -2.39 -0.02 1.88 16 11 N -0.71 -16.33 4.91 -442.15 -2.17 -18.50 16 12 C 0.54 18.44 7.82 87.66 0.69 19.12 16 13 O -0.55 -23.18 15.52 -3.03 -0.05 -23.23 16 14 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 15 S -0.14 -7.35 20.57 -56.49 -1.16 -8.52 16 16 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 17 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 18 C 0.02 1.03 5.49 84.86 0.47 1.50 16 19 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 20 Si 0.99 43.74 29.55 68.60 2.03 45.76 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 24 C -0.12 -1.18 5.58 30.62 0.17 -1.01 16 25 C -0.13 -1.40 5.21 30.67 0.16 -1.24 16 26 C 0.14 2.00 3.49 44.98 0.16 2.16 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 C -0.13 -2.37 7.60 71.98 0.55 -1.82 16 29 H 0.11 1.86 7.84 -2.91 -0.02 1.84 16 30 H 0.11 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.10 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.07 1.72 7.75 -2.39 -0.02 1.70 16 33 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 34 H 0.08 2.17 7.48 -2.39 -0.02 2.15 16 35 H 0.11 2.08 8.11 -2.39 -0.02 2.06 16 36 H 0.08 1.65 5.96 -2.39 -0.01 1.64 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.41 8.08 6.77 -92.71 -0.63 7.45 16 39 H 0.10 3.62 8.14 -2.40 -0.02 3.60 16 40 H 0.10 3.74 8.14 -2.40 -0.02 3.72 16 41 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 0.77 6.40 -2.39 -0.02 0.75 16 46 H 0.05 1.11 6.74 -2.39 -0.02 1.10 16 47 H 0.05 1.15 6.77 -2.38 -0.02 1.13 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.43 396.31 2.98 -72.45 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.32 Total: 27.11 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 6.06 Total: -10.52 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -4.18 Total: -86.76 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.08 Total: -39.53 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.16 Total: -8.52 kcal Total: -75.43 2.98 -72.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.178 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds