Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99502 * 2 1 4 4 C 1.53005 * 109.46830 * 125.00109 * 3 2 1 5 5 C 1.50696 * 109.46883 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00402 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99866 * 180.02562 * 5 4 3 8 8 C 1.46932 * 120.63198 * 5.72376 * 7 5 4 9 9 C 1.53186 * 108.77517 * 233.59005 * 8 7 5 10 10 H 1.09005 * 109.51915 * 185.39946 * 9 8 7 11 11 N 1.46494 * 109.50074 * 65.31904 * 9 8 7 12 12 C 1.34773 * 120.00390 * 85.15897 * 11 9 8 13 13 O 1.21277 * 119.99875 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99918 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.46931 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99989 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99534 * 359.97438 * 16 15 14 18 18 C 1.38793 * 119.99900 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00009 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47221 * 119.99901 * 20 18 16 23 23 H 1.48492 * 109.47654 * 240.00184 * 20 18 16 24 24 C 1.53044 * 109.31374 * 305.35927 * 9 8 7 25 25 C 1.53037 * 109.53415 * 61.37078 * 24 9 8 26 26 C 1.46930 * 120.63310 * 185.70234 * 7 5 4 27 27 H 1.08998 * 109.58322 * 246.20048 * 26 7 5 28 28 C 1.52996 * 109.69850 * 6.55671 * 26 7 5 29 29 H 1.08002 * 120.00214 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00312 * 179.97438 * 1 2 3 31 31 H 1.07988 * 120.00080 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47512 * 5.00509 * 3 2 1 33 33 H 1.08996 * 109.46633 * 244.99819 * 3 2 1 34 34 H 1.09006 * 109.46877 * 59.99845 * 4 3 2 35 35 H 1.09000 * 109.47316 * 299.99821 * 4 3 2 36 36 H 1.08995 * 109.58735 * 113.79860 * 8 7 5 37 37 H 1.09007 * 109.58418 * 353.37568 * 8 7 5 38 38 H 0.97009 * 119.99723 * 265.15680 * 11 9 8 39 39 H 1.08998 * 109.47121 * 299.99998 * 14 12 11 40 40 H 1.09002 * 109.47443 * 60.00042 * 14 12 11 41 41 H 0.97001 * 120.00037 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46116 * 181.38905 * 24 9 8 43 43 H 1.08997 * 109.46294 * 301.36350 * 24 9 8 44 44 H 1.09001 * 109.50148 * 58.58304 * 25 24 9 45 45 H 1.08998 * 109.50063 * 178.68591 * 25 24 9 46 46 H 1.09002 * 109.46697 * 173.83098 * 28 26 7 47 47 H 1.09002 * 109.47389 * 293.82759 * 28 26 7 48 48 H 1.09000 * 109.47644 * 53.83409 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7888 2.6381 1.1813 6 8 3.5702 3.4645 0.3211 7 7 4.7060 2.8867 2.1371 8 6 5.0724 1.8493 3.1110 9 6 4.9041 2.4177 4.5235 10 1 5.2633 1.6920 5.2533 11 7 3.4882 2.7004 4.7713 12 6 2.6724 1.7219 5.2111 13 8 3.1106 0.6073 5.4021 14 6 1.2158 2.0128 5.4654 15 16 0.3921 0.5082 6.0431 16 6 -1.2469 1.1192 6.2563 17 1 -1.4701 2.1533 6.0388 18 6 -2.2505 0.2719 6.7048 19 7 -1.9780 -0.9880 6.9713 20 14 -3.9878 0.9199 6.9315 21 1 -4.0310 2.3588 6.5667 22 1 -4.9175 0.1601 6.0576 23 1 -4.3963 0.7558 8.3497 24 6 5.7129 3.7109 4.6486 25 6 5.1872 4.7420 3.6473 26 6 5.3588 4.2001 2.2247 27 1 6.4200 4.0964 1.9986 28 6 4.7136 5.1642 1.2272 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2357 2.1131 36 1 6.1103 1.5540 2.9572 37 1 4.4217 0.9839 2.9853 38 1 3.1378 3.5921 4.6189 39 1 1.1276 2.7901 6.2244 40 1 0.7463 2.3518 4.5419 41 1 -2.6795 -1.5802 7.2843 42 1 5.6146 4.1043 5.6603 43 1 6.7625 3.5044 4.4396 44 1 4.1310 4.9306 3.8399 45 1 5.7482 5.6706 3.7529 46 1 5.1241 6.1638 1.3707 47 1 4.9212 4.8286 0.2112 48 1 3.6359 5.1874 1.3892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572609432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -52.241209 kcal Electronic energy + Delta-G solvation = -28501.394185 eV Core-core repulsion = 24683.086354 eV Total energy + Delta-G solvation = -3818.307831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97846 -39.27875 -37.57662 -35.45895 -34.27334 -33.36925 -32.44541 -31.62419 -30.42826 -28.96019 -27.33422 -25.50712 -25.09843 -24.37976 -22.14568 -21.23408 -20.35406 -19.71654 -18.72770 -17.95243 -16.93419 -16.76341 -16.23979 -16.00566 -15.58965 -15.19586 -14.82228 -14.80799 -14.47179 -14.31548 -14.11355 -13.98980 -13.57385 -13.33515 -13.09469 -13.05557 -12.62086 -12.53778 -12.47251 -12.23030 -12.03818 -11.96710 -11.63993 -11.31892 -11.24545 -11.08421 -11.04101 -11.03258 -10.95822 -10.82740 -10.75347 -9.82524 -9.47305 -9.36540 -9.25914 -9.08931 -9.05305 -8.56540 -8.26393 -6.51949 -6.23775 -3.94081 2.35853 2.54922 2.81869 2.99568 3.01075 3.20377 3.27139 3.31583 3.67112 4.18613 4.32256 4.38128 4.51890 4.60995 4.75316 4.89699 4.96388 5.02523 5.11242 5.11940 5.14528 5.18866 5.27848 5.28691 5.35561 5.41065 5.49778 5.54251 5.58116 5.63754 5.68851 5.75544 5.82610 5.84735 5.90122 6.01682 6.03965 6.10766 6.13230 6.20419 6.48414 6.59302 6.72937 6.86272 7.24995 7.58341 7.63408 8.11599 8.33755 8.53183 9.22256 10.83647 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003555 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.060989 B = 7873.805724 C = 9315.152973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 C -0.073 4.073 4 C -0.140 4.140 5 C 0.521 3.479 6 O -0.536 6.536 7 N -0.608 5.608 8 C 0.093 3.907 9 C 0.132 3.868 10 H 0.102 0.898 11 N -0.730 5.730 12 C 0.533 3.467 13 O -0.517 6.517 14 C -0.155 4.155 15 S -0.057 6.057 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.917 3.083 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.280 1.280 24 C -0.127 4.127 25 C -0.134 4.134 26 C 0.143 3.857 27 H 0.070 0.930 28 C -0.137 4.137 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.397 0.603 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.077 0.923 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.367 9.752 -10.466 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.181 4.181 3 C -0.110 4.110 4 C -0.180 4.180 5 C 0.310 3.690 6 O -0.414 6.414 7 N -0.342 5.342 8 C -0.031 4.031 9 C 0.026 3.974 10 H 0.119 0.881 11 N -0.385 5.385 12 C 0.319 3.681 13 O -0.391 6.391 14 C -0.305 4.305 15 S 0.170 5.830 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.503 5.503 20 Si 0.743 3.257 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.165 4.165 25 C -0.172 4.172 26 C 0.040 3.960 27 H 0.088 0.912 28 C -0.194 4.194 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.232 0.768 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.916 8.156 -10.542 21.536 hybrid contribution -1.779 1.986 0.139 2.670 sum 15.136 10.142 -10.404 20.981 Atomic orbital electron populations 1.23890 0.95963 1.02052 0.99880 1.22873 0.96130 0.98074 1.01016 1.20444 0.97577 0.95717 0.97300 1.21730 0.99044 0.95427 1.01790 1.20732 0.78797 0.89065 0.80405 1.90719 1.65962 1.47479 1.37257 1.48135 1.41508 1.13454 1.31148 1.22273 1.01647 0.91100 0.88114 1.21228 0.82112 0.97801 0.96256 0.88052 1.46117 1.08866 1.13796 1.69748 1.20334 0.87804 0.84441 0.75525 1.90698 1.76464 1.21918 1.50045 1.23541 0.94400 1.07806 1.04801 1.85347 1.05273 1.07068 1.85334 1.22900 0.94317 0.99128 1.51954 0.90956 1.24968 0.99239 0.94593 0.94643 1.70022 1.33643 1.04248 1.42365 0.86144 0.82552 0.78957 0.78026 1.19625 1.20531 1.20556 1.21809 0.99762 0.94714 1.00211 1.22030 1.02157 0.98739 0.94271 1.21261 0.96629 0.82702 0.95393 0.91190 1.22181 1.01320 0.96222 0.99716 0.88587 0.88338 0.87424 0.90925 0.90727 0.89071 0.88416 0.90423 0.88526 0.76793 0.89361 0.89441 0.92245 0.90637 0.90242 0.91415 0.90348 0.93947 0.90372 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.32 29.01 0.42 -1.87 16 2 C -0.16 -1.98 9.52 -36.02 -0.34 -2.32 16 3 C -0.07 -0.88 4.95 -27.88 -0.14 -1.01 16 4 C -0.14 -1.65 4.04 -27.88 -0.11 -1.76 16 5 C 0.52 6.34 7.50 -10.99 -0.08 6.26 16 6 O -0.54 -7.69 11.56 5.56 0.06 -7.62 16 7 N -0.61 -6.10 2.89 -165.22 -0.48 -6.57 16 8 C 0.09 0.87 5.95 -3.71 -0.02 0.85 16 9 C 0.13 1.29 2.81 -67.81 -0.19 1.10 16 10 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 11 N -0.73 -8.81 4.91 -53.69 -0.26 -9.08 16 12 C 0.53 9.09 7.82 -10.99 -0.09 9.00 16 13 O -0.52 -10.57 15.52 5.56 0.09 -10.48 16 14 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 15 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 16 C -0.53 -15.02 9.50 30.94 0.29 -14.72 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 20 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.13 -0.89 5.59 -26.69 -0.15 -1.04 16 25 C -0.13 -0.96 5.21 -26.61 -0.14 -1.10 16 26 C 0.14 1.24 3.49 -67.60 -0.24 1.00 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -1.38 7.61 37.16 0.28 -1.10 16 29 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 30 H 0.10 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 35 H 0.10 1.32 7.92 -51.93 -0.41 0.90 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.07 5.93 -51.92 -0.31 0.76 16 38 H 0.40 4.22 6.77 -40.82 -0.28 3.95 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.55 6.40 -51.93 -0.33 0.22 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.93 6.58 -51.93 -0.34 0.58 16 48 H 0.06 0.79 6.94 -51.93 -0.36 0.43 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -33.41 396.38 -9.33 -42.74 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.83 Total: 5.04 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.38 Total: -7.48 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.01 Total: -40.71 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.15 Total: -18.11 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.41 -9.33 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.501 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds