Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99502 * 2 1 4 4 C 1.53005 * 109.46830 * 125.00109 * 3 2 1 5 5 C 1.50696 * 109.46883 * 179.97438 * 4 3 2 6 6 O 1.21272 * 120.00402 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99866 * 180.02562 * 5 4 3 8 8 C 1.46932 * 120.63198 * 5.72376 * 7 5 4 9 9 C 1.53186 * 108.77517 * 233.59005 * 8 7 5 10 10 H 1.09005 * 109.51915 * 185.39946 * 9 8 7 11 11 N 1.46494 * 109.50074 * 65.31904 * 9 8 7 12 12 C 1.34773 * 120.00390 * 85.15897 * 11 9 8 13 13 O 1.21277 * 119.99875 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99918 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.46931 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99989 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99534 * 359.97438 * 16 15 14 18 18 C 1.38793 * 119.99900 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00009 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47221 * 119.99901 * 20 18 16 23 23 H 1.48492 * 109.47654 * 240.00184 * 20 18 16 24 24 C 1.53044 * 109.31374 * 305.35927 * 9 8 7 25 25 C 1.53037 * 109.53415 * 61.37078 * 24 9 8 26 26 C 1.46930 * 120.63310 * 185.70234 * 7 5 4 27 27 H 1.08998 * 109.58322 * 246.20048 * 26 7 5 28 28 C 1.52996 * 109.69850 * 6.55671 * 26 7 5 29 29 H 1.08002 * 120.00214 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00312 * 179.97438 * 1 2 3 31 31 H 1.07988 * 120.00080 * 180.02562 * 2 1 3 32 32 H 1.08992 * 109.47512 * 5.00509 * 3 2 1 33 33 H 1.08996 * 109.46633 * 244.99819 * 3 2 1 34 34 H 1.09006 * 109.46877 * 59.99845 * 4 3 2 35 35 H 1.09000 * 109.47316 * 299.99821 * 4 3 2 36 36 H 1.08995 * 109.58735 * 113.79860 * 8 7 5 37 37 H 1.09007 * 109.58418 * 353.37568 * 8 7 5 38 38 H 0.97009 * 119.99723 * 265.15680 * 11 9 8 39 39 H 1.08998 * 109.47121 * 299.99998 * 14 12 11 40 40 H 1.09002 * 109.47443 * 60.00042 * 14 12 11 41 41 H 0.97001 * 120.00037 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.46116 * 181.38905 * 24 9 8 43 43 H 1.08997 * 109.46294 * 301.36350 * 24 9 8 44 44 H 1.09001 * 109.50148 * 58.58304 * 25 24 9 45 45 H 1.08998 * 109.50063 * 178.68591 * 25 24 9 46 46 H 1.09002 * 109.46697 * 173.83098 * 28 26 7 47 47 H 1.09002 * 109.47389 * 293.82759 * 28 26 7 48 48 H 1.09000 * 109.47644 * 53.83409 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7888 2.6381 1.1813 6 8 3.5702 3.4645 0.3211 7 7 4.7060 2.8867 2.1371 8 6 5.0724 1.8493 3.1110 9 6 4.9041 2.4177 4.5235 10 1 5.2633 1.6920 5.2533 11 7 3.4882 2.7004 4.7713 12 6 2.6724 1.7219 5.2111 13 8 3.1106 0.6073 5.4021 14 6 1.2158 2.0128 5.4654 15 16 0.3921 0.5082 6.0431 16 6 -1.2469 1.1192 6.2563 17 1 -1.4701 2.1533 6.0388 18 6 -2.2505 0.2719 6.7048 19 7 -1.9780 -0.9880 6.9713 20 14 -3.9878 0.9199 6.9315 21 1 -4.0310 2.3588 6.5667 22 1 -4.9175 0.1601 6.0576 23 1 -4.3963 0.7558 8.3497 24 6 5.7129 3.7109 4.6486 25 6 5.1872 4.7420 3.6473 26 6 5.3588 4.2001 2.2247 27 1 6.4200 4.0964 1.9986 28 6 4.7136 5.1642 1.2272 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4027 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2357 2.1131 36 1 6.1103 1.5540 2.9572 37 1 4.4217 0.9839 2.9853 38 1 3.1378 3.5921 4.6189 39 1 1.1276 2.7901 6.2244 40 1 0.7463 2.3518 4.5419 41 1 -2.6795 -1.5802 7.2843 42 1 5.6146 4.1043 5.6603 43 1 6.7625 3.5044 4.4396 44 1 4.1310 4.9306 3.8399 45 1 5.7482 5.6706 3.7529 46 1 5.1241 6.1638 1.3707 47 1 4.9212 4.8286 0.2112 48 1 3.6359 5.1874 1.3892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572609432.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -72.983109 kcal Electronic energy + Delta-G solvation = -28502.293621 eV Core-core repulsion = 24683.086354 eV Total energy + Delta-G solvation = -3819.207267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88007 -40.49648 -38.57739 -36.45484 -35.32668 -34.58372 -34.15975 -32.69056 -31.39499 -30.28552 -28.22678 -27.63279 -25.97816 -25.20146 -22.97474 -22.28308 -21.35569 -20.71269 -19.87141 -19.64162 -18.08748 -17.73111 -17.42368 -16.96348 -16.88374 -16.67490 -16.36791 -15.86979 -15.69276 -15.40971 -15.19024 -14.88934 -14.78072 -14.58461 -14.14059 -14.06924 -13.97147 -13.53738 -13.42309 -13.32680 -13.15891 -13.04418 -12.93195 -12.91777 -12.63708 -12.45294 -12.08189 -11.96843 -11.91925 -11.89701 -11.71873 -11.52993 -11.15975 -10.91181 -10.38235 -10.29742 -10.27462 -10.01505 -9.43673 -8.64193 -8.35241 -6.11557 1.27023 1.35548 1.39560 1.46146 1.56795 1.57557 1.65600 1.99205 2.25361 2.32297 2.99177 3.31865 3.47157 3.66813 3.81400 3.89336 3.93804 3.96922 4.02799 4.12084 4.23813 4.26941 4.36068 4.38394 4.38585 4.46603 4.49392 4.58155 4.63979 4.73789 4.85448 4.86968 4.90197 4.96702 5.02437 5.10858 5.14620 5.15758 5.35418 5.38404 5.41849 5.52526 5.71806 5.73819 5.85868 6.19545 6.35707 6.48468 7.07005 7.19651 7.24088 8.73908 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003555 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.060989 B = 7873.805724 C = 9315.152973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C -0.068 4.068 4 C -0.135 4.135 5 C 0.517 3.483 6 O -0.562 6.562 7 N -0.602 5.602 8 C 0.094 3.906 9 C 0.128 3.872 10 H 0.094 0.906 11 N -0.708 5.708 12 C 0.539 3.461 13 O -0.554 6.554 14 C -0.134 4.134 15 S -0.135 6.135 16 C -0.548 4.548 17 H 0.077 0.923 18 C 0.018 3.982 19 N -0.908 5.908 20 Si 0.992 3.008 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.116 4.116 25 C -0.128 4.128 26 C 0.140 3.860 27 H 0.091 0.909 28 C -0.129 4.129 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.407 0.593 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 11.765 -10.370 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.180 4.180 3 C -0.106 4.106 4 C -0.175 4.175 5 C 0.306 3.694 6 O -0.442 6.442 7 N -0.335 5.335 8 C -0.030 4.030 9 C 0.023 3.977 10 H 0.112 0.888 11 N -0.362 5.362 12 C 0.324 3.676 13 O -0.432 6.432 14 C -0.286 4.286 15 S 0.092 5.908 16 C -0.696 4.696 17 H 0.095 0.905 18 C -0.187 4.187 19 N -0.545 5.545 20 Si 0.814 3.186 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.154 4.154 25 C -0.167 4.167 26 C 0.038 3.962 27 H 0.109 0.891 28 C -0.187 4.187 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.244 0.756 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.075 0.925 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.427 10.216 -10.446 23.517 hybrid contribution -2.109 1.431 0.061 2.549 sum 16.319 11.646 -10.385 22.578 Atomic orbital electron populations 1.24008 0.96393 1.02259 1.00734 1.23035 0.96113 0.98630 1.00223 1.20377 0.97350 0.95094 0.97734 1.21658 0.99076 0.96241 1.00491 1.20753 0.79180 0.88762 0.80689 1.90725 1.66926 1.48103 1.38432 1.48163 1.40736 1.14285 1.30357 1.22319 1.02929 0.90209 0.87542 1.21485 0.80431 0.99598 0.96194 0.88848 1.45930 1.09615 1.13018 1.67604 1.19874 0.87147 0.84709 0.75845 1.90689 1.76777 1.23551 1.52187 1.23390 0.95711 1.04201 1.05257 1.85425 1.06412 1.12715 1.86207 1.23217 0.94959 0.99428 1.51966 0.90472 1.26017 1.03916 0.94715 0.94024 1.70167 1.35231 1.05738 1.43353 0.84998 0.76590 0.78757 0.78206 1.18403 1.19899 1.19777 1.21791 1.00405 0.92655 1.00567 1.22013 1.01963 0.99724 0.92958 1.21457 0.97290 0.81458 0.96028 0.89077 1.22028 0.99885 0.97759 0.98997 0.88886 0.87808 0.86162 0.92474 0.90251 0.87489 0.90348 0.87413 0.90417 0.75610 0.87865 0.88487 0.91982 0.89947 0.87669 0.92522 0.87918 0.91858 0.92490 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.12 14.32 67.78 0.97 -4.15 16 2 C -0.16 -3.98 9.52 25.65 0.24 -3.74 16 3 C -0.07 -1.66 4.95 29.85 0.15 -1.52 16 4 C -0.13 -3.17 4.04 29.85 0.12 -3.05 16 5 C 0.52 12.31 7.50 87.66 0.66 12.97 16 6 O -0.56 -16.13 11.56 -3.00 -0.03 -16.17 16 7 N -0.60 -10.93 2.89 -795.02 -2.30 -13.23 16 8 C 0.09 1.56 5.95 86.36 0.51 2.07 16 9 C 0.13 2.19 2.81 45.07 0.13 2.32 16 10 H 0.09 1.86 7.58 -2.38 -0.02 1.85 16 11 N -0.71 -16.00 4.91 -442.18 -2.17 -18.17 16 12 C 0.54 18.22 7.82 87.66 0.69 18.91 16 13 O -0.55 -22.96 15.52 -3.02 -0.05 -23.01 16 14 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 15 S -0.13 -7.29 20.57 -56.49 -1.16 -8.45 16 16 C -0.55 -31.14 9.50 67.95 0.65 -30.49 16 17 H 0.08 4.15 7.80 -2.91 -0.02 4.12 16 18 C 0.02 1.04 5.49 84.86 0.47 1.51 16 19 N -0.91 -55.11 13.22 21.65 0.29 -54.83 16 20 Si 0.99 43.63 29.55 68.60 2.03 45.65 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C -0.12 -1.16 5.59 30.62 0.17 -0.99 16 25 C -0.13 -1.35 5.21 30.67 0.16 -1.19 16 26 C 0.14 2.00 3.49 44.97 0.16 2.15 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 C -0.13 -2.39 7.61 71.98 0.55 -1.84 16 29 H 0.09 2.41 7.84 -2.91 -0.02 2.39 16 30 H 0.10 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.12 2.62 8.06 -2.92 -0.02 2.60 16 32 H 0.06 1.56 7.75 -2.39 -0.02 1.54 16 33 H 0.08 1.86 8.10 -2.39 -0.02 1.85 16 34 H 0.11 2.13 7.71 -2.38 -0.02 2.11 16 35 H 0.08 2.17 7.92 -2.39 -0.02 2.15 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.65 5.93 -2.38 -0.01 1.64 16 38 H 0.41 7.84 6.77 -92.70 -0.63 7.21 16 39 H 0.10 3.69 8.14 -2.40 -0.02 3.67 16 40 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.75 6.40 -2.39 -0.02 0.73 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 1.30 6.58 -2.39 -0.02 1.29 16 48 H 0.04 0.94 6.94 -2.39 -0.02 0.93 16 Total: -1.00 -75.24 396.38 2.97 -72.27 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.32 Total: 27.76 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 6.05 Total: -11.83 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -4.18 Total: -86.23 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.08 Total: -39.18 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -7.29 SS G_CDS: -1.16 Total: -8.45 kcal Total: -75.24 2.97 -72.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609432.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.712 kcal (2) G-P(sol) polarization free energy of solvation -75.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds