Wall clock time and date at job start Sat Apr 11 2020 06:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00678 * 2 1 4 4 C 1.52993 * 109.47289 * 124.99802 * 3 2 1 5 5 C 1.50700 * 109.47055 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99931 * 0.02562 * 5 4 3 7 7 N 1.34779 * 119.99804 * 179.97438 * 5 4 3 8 8 C 1.46921 * 120.63383 * 354.94975 * 7 5 4 9 9 C 1.53187 * 108.77824 * 233.58664 * 8 7 5 10 10 H 1.09003 * 109.49812 * 65.34712 * 9 8 7 11 11 N 1.46493 * 109.49851 * 185.41588 * 9 8 7 12 12 C 1.34779 * 119.99750 * 274.99597 * 11 9 8 13 13 O 1.21274 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.50709 * 119.99858 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.46823 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99918 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99810 * 0.02562 * 16 15 14 18 18 C 1.38793 * 120.00067 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47358 * 59.99851 * 20 18 16 22 22 H 1.48505 * 109.46911 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47219 * 299.99648 * 20 18 16 24 24 C 1.53047 * 109.31139 * 305.36369 * 9 8 7 25 25 C 1.53041 * 109.53657 * 61.36457 * 24 9 8 26 26 C 1.46926 * 120.62820 * 174.92485 * 7 5 4 27 27 H 1.09000 * 109.59084 * 246.34498 * 26 7 5 28 28 C 1.53005 * 109.58759 * 6.63126 * 26 7 5 29 29 H 1.08001 * 119.99407 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00336 * 179.97438 * 1 2 3 31 31 H 1.08009 * 119.99751 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.46479 * 4.99706 * 3 2 1 33 33 H 1.08995 * 109.46625 * 245.00287 * 3 2 1 34 34 H 1.09002 * 109.47519 * 59.99970 * 4 3 2 35 35 H 1.09006 * 109.47256 * 299.99989 * 4 3 2 36 36 H 1.09004 * 109.58414 * 113.79403 * 8 7 5 37 37 H 1.09000 * 109.70170 * 353.44494 * 8 7 5 38 38 H 0.96996 * 120.00518 * 94.99890 * 11 9 8 39 39 H 1.08999 * 109.46960 * 60.00297 * 14 12 11 40 40 H 1.09002 * 109.46762 * 299.99902 * 14 12 11 41 41 H 0.97005 * 120.00401 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.46064 * 181.38351 * 24 9 8 43 43 H 1.09000 * 109.46295 * 301.34531 * 24 9 8 44 44 H 1.08997 * 109.49688 * 178.68291 * 25 24 9 45 45 H 1.09007 * 109.52520 * 58.60381 * 25 24 9 46 46 H 1.09002 * 109.47103 * 55.63412 * 28 26 7 47 47 H 1.09000 * 109.47494 * 175.63741 * 28 26 7 48 48 H 1.09003 * 109.46753 * 295.63774 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7883 2.6382 1.1819 6 8 3.5692 3.4649 0.3220 7 7 4.7046 2.8873 2.1384 8 6 4.9021 1.9461 3.2491 9 6 4.7739 2.7094 4.5711 10 1 3.7535 3.0765 4.6817 11 7 5.0952 1.8146 5.6856 12 6 4.1421 1.0153 6.2043 13 8 3.0186 1.0364 5.7482 14 6 4.4726 0.0952 7.3513 15 16 2.9955 -0.8409 7.8185 16 6 3.6502 -1.8061 9.1394 17 1 4.6870 -1.7008 9.4228 18 6 2.8332 -2.7010 9.8161 19 7 1.5692 -2.8283 9.4717 20 14 3.5270 -3.7237 11.2168 21 1 4.0338 -2.8233 12.2835 22 1 2.4591 -4.5950 11.7698 23 1 4.6399 -4.5665 10.7103 24 6 5.7455 3.8919 4.5689 25 6 5.3901 4.8442 3.4248 26 6 5.5253 4.1050 2.0899 27 1 6.5683 3.8362 1.9226 28 6 5.0392 5.0062 0.9530 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6213 1.4024 -0.9314 34 1 3.7400 0.5063 1.0921 35 1 2.4773 1.2355 2.1130 36 1 5.8946 1.5011 3.1788 37 1 4.1462 1.1620 3.2052 38 1 5.9939 1.7975 6.0502 39 1 4.8144 0.6839 8.2025 40 1 5.2592 -0.5957 7.0478 41 1 0.9980 -3.4534 9.9449 42 1 5.6739 4.4224 5.5184 43 1 6.7631 3.5256 4.4337 44 1 6.0678 5.6978 3.4382 45 1 4.3642 5.1922 3.5457 46 1 3.9773 5.2147 1.0834 47 1 5.5976 5.9422 0.9671 48 1 5.1963 4.5037 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572609434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:25 Heat of formation + Delta-G solvation = -53.557529 kcal Electronic energy + Delta-G solvation = -27464.077093 eV Core-core repulsion = 23645.712182 eV Total energy + Delta-G solvation = -3818.364911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91634 -39.37792 -37.60963 -35.61372 -34.56871 -33.42398 -32.46638 -31.66406 -30.50708 -29.09906 -27.08498 -25.53275 -25.11130 -24.43302 -22.18986 -21.20556 -20.39666 -19.87993 -19.08004 -17.90119 -17.05485 -16.62388 -16.37905 -16.15283 -15.63640 -15.20308 -14.96435 -14.83731 -14.61218 -14.39001 -14.17027 -14.05481 -13.63103 -13.31194 -13.12682 -12.98094 -12.74006 -12.57593 -12.48637 -12.33352 -12.18586 -12.03041 -11.49780 -11.34610 -11.27480 -11.15563 -11.10426 -11.08544 -11.06877 -10.93904 -10.78818 -9.86596 -9.54350 -9.49358 -9.30498 -9.14114 -9.09141 -8.65739 -8.29216 -6.54598 -6.25236 -3.96373 2.16402 2.45734 2.65503 2.96099 3.03367 3.20712 3.25113 3.28135 3.63250 4.16838 4.31999 4.35078 4.48920 4.59326 4.73656 4.77471 4.92716 4.99937 5.02610 5.05903 5.09987 5.10085 5.19527 5.20090 5.30658 5.38536 5.45812 5.48508 5.56518 5.60648 5.70341 5.71834 5.74859 5.81898 5.85324 5.91091 5.99940 6.03309 6.07680 6.13389 6.42605 6.52422 6.54019 6.67060 7.18660 7.55383 7.58758 8.03476 8.31177 8.49254 9.20085 10.82066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.002648 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.111590 B =10571.827914 C =12624.736606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.158 4.158 3 C -0.075 4.075 4 C -0.143 4.143 5 C 0.520 3.480 6 O -0.535 6.535 7 N -0.609 5.609 8 C 0.095 3.905 9 C 0.134 3.866 10 H 0.093 0.907 11 N -0.733 5.733 12 C 0.533 3.467 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.127 4.127 25 C -0.128 4.128 26 C 0.141 3.859 27 H 0.071 0.929 28 C -0.135 4.135 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 12.639 -16.030 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.176 4.176 3 C -0.113 4.113 4 C -0.182 4.182 5 C 0.310 3.690 6 O -0.413 6.413 7 N -0.343 5.343 8 C -0.029 4.029 9 C 0.028 3.972 10 H 0.111 0.889 11 N -0.388 5.388 12 C 0.319 3.681 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.165 4.165 25 C -0.167 4.167 26 C 0.038 3.962 27 H 0.089 0.911 28 C -0.192 4.192 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.726 13.019 -17.215 22.925 hybrid contribution 2.288 -0.890 1.904 3.107 sum 10.014 12.130 -15.311 21.951 Atomic orbital electron populations 1.23880 0.95989 1.01936 1.00784 1.22949 0.96160 0.98301 1.00194 1.20469 0.97666 0.95556 0.97563 1.21759 0.99229 0.95509 1.01739 1.20736 0.78867 0.88906 0.80531 1.90736 1.65188 1.47042 1.38325 1.48118 1.38434 1.22702 1.25052 1.22212 1.03064 0.92291 0.85364 1.21162 1.00950 0.89629 0.85492 0.88907 1.46022 1.14116 1.42860 1.35796 1.20387 0.84564 0.79766 0.83360 1.90708 1.20972 1.66251 1.60857 1.23542 1.07642 1.01070 0.98241 1.85401 1.07960 1.46830 1.43009 1.22819 0.99197 1.26733 1.19782 0.90974 1.24985 0.94652 0.96432 0.97454 1.70001 1.04947 1.35123 1.40175 0.86231 0.78598 0.79600 0.81114 1.19933 1.20794 1.19932 1.21817 0.99110 0.95927 0.99685 1.21980 1.03083 0.98067 0.93527 1.21336 0.94288 0.84597 0.95991 0.91095 1.22204 1.02098 0.97267 0.97654 0.88590 0.88394 0.87282 0.90842 0.90520 0.88850 0.88142 0.91041 0.88569 0.76582 0.89177 0.89144 0.92087 0.90600 0.91122 0.90187 0.90991 0.90862 0.94012 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 14.32 29.02 0.42 -1.46 16 2 C -0.16 -1.59 9.52 -36.02 -0.34 -1.93 16 3 C -0.07 -0.78 4.95 -27.89 -0.14 -0.91 16 4 C -0.14 -1.48 4.08 -27.89 -0.11 -1.60 16 5 C 0.52 6.05 7.60 -10.98 -0.08 5.97 16 6 O -0.54 -7.29 11.38 5.56 0.06 -7.23 16 7 N -0.61 -6.16 2.97 -165.22 -0.49 -6.65 16 8 C 0.10 0.94 5.90 -3.72 -0.02 0.92 16 9 C 0.13 1.39 2.60 -67.81 -0.18 1.21 16 10 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 11 N -0.73 -8.38 5.08 -53.69 -0.27 -8.65 16 12 C 0.53 8.96 7.81 -10.98 -0.09 8.88 16 13 O -0.51 -10.67 15.53 5.56 0.09 -10.58 16 14 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 17 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 20 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.13 -0.95 5.35 -26.69 -0.14 -1.09 16 25 C -0.13 -0.96 5.37 -26.61 -0.14 -1.11 16 26 C 0.14 1.23 3.49 -67.60 -0.24 0.99 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -1.32 7.59 37.16 0.28 -1.04 16 29 H 0.10 0.91 7.84 -52.49 -0.41 0.50 16 30 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.11 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 33 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.09 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.10 1.15 7.48 -51.93 -0.39 0.76 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.10 5.97 -51.93 -0.31 0.79 16 38 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 39 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 40 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.86 6.73 -51.93 -0.35 0.51 16 47 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -33.61 399.82 -9.45 -43.06 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.99 Total: 3.23 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.37 Total: -6.46 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.03 Total: -40.27 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.15 Total: -17.81 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.61 -9.45 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572609434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.497 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds