Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50700 * 120.00248 * 2 1 4 4 C 1.32993 * 119.99690 * 179.97438 * 2 1 3 5 5 C 1.47105 * 120.00022 * 354.10130 * 4 2 1 6 6 O 1.21606 * 120.00206 * 354.42860 * 5 4 2 7 7 N 1.34782 * 119.99841 * 174.16224 * 5 4 2 8 8 C 1.46495 * 119.99763 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.50098 * 34.99551 * 8 7 5 10 10 C 1.53042 * 109.49702 * 155.05915 * 8 7 5 11 11 C 1.53047 * 109.53756 * 58.58806 * 10 8 7 12 12 C 1.53192 * 109.31211 * 61.36299 * 11 10 8 13 13 H 1.08993 * 109.58600 * 65.29884 * 12 11 10 14 14 C 1.53002 * 109.58308 * 185.58038 * 12 11 10 15 15 N 1.46932 * 108.77529 * 305.36628 * 12 11 10 16 16 C 1.34780 * 120.62591 * 233.62996 * 15 12 11 17 17 O 1.21280 * 120.00353 * 5.09454 * 16 15 12 18 18 C 1.50701 * 119.99407 * 185.08850 * 16 15 12 19 19 S 1.81003 * 109.47071 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00190 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99874 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99704 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99904 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00450 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47018 * 90.00419 * 24 22 20 26 26 H 1.48492 * 109.47509 * 210.00222 * 24 22 20 27 27 H 1.48501 * 109.46947 * 330.00254 * 24 22 20 28 28 C 1.46989 * 118.75435 * 53.61176 * 15 12 11 29 29 H 1.08998 * 109.47341 * 245.26035 * 1 2 3 30 30 H 1.09003 * 109.46777 * 5.26221 * 1 2 3 31 31 H 1.09004 * 109.47001 * 125.25533 * 1 2 3 32 32 H 1.09001 * 109.46543 * 239.99712 * 3 2 1 33 33 H 1.08995 * 109.46922 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.46986 * 119.99451 * 3 2 1 35 35 H 1.07999 * 120.00162 * 174.09067 * 4 2 1 36 36 H 0.97001 * 120.00186 * 359.97438 * 7 5 4 37 37 H 1.09005 * 109.45674 * 178.60213 * 10 8 7 38 38 H 1.08994 * 109.46269 * 298.57856 * 10 8 7 39 39 H 1.08996 * 109.49659 * 181.31551 * 11 10 8 40 40 H 1.09001 * 109.49290 * 301.40996 * 11 10 8 41 41 H 1.08995 * 109.47123 * 63.61141 * 14 12 11 42 42 H 1.08999 * 109.46855 * 183.61158 * 14 12 11 43 43 H 1.08992 * 109.47219 * 303.61003 * 14 12 11 44 44 H 1.09005 * 109.47305 * 299.99750 * 18 16 15 45 45 H 1.08991 * 109.47428 * 60.00167 * 18 16 15 46 46 H 0.97000 * 120.00264 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.62911 * 186.62020 * 28 15 12 48 48 H 1.08999 * 109.58581 * 66.17308 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4422 -2.4223 0.1320 6 8 0.2444 -2.4166 0.3417 7 7 2.1003 -3.5927 0.0147 8 6 1.3737 -4.8579 0.1463 9 1 0.3735 -4.7483 -0.2729 10 6 2.1248 -5.9589 -0.6059 11 6 3.5408 -6.0906 -0.0403 12 6 3.4613 -6.4829 1.4384 13 1 3.0252 -7.4776 1.5296 14 6 4.8655 -6.4809 2.0458 15 7 2.6188 -5.5062 2.1421 16 6 3.0753 -4.8699 3.2391 17 8 4.2216 -5.0311 3.6007 18 6 2.1611 -3.9579 4.0161 19 16 3.0602 -3.2580 5.4225 20 6 1.7909 -2.2637 6.1330 21 1 0.8114 -2.2328 5.6790 22 6 2.0502 -1.5193 7.2754 23 7 1.1021 -0.7761 7.8059 24 14 3.7445 -1.5721 8.0601 25 1 4.5953 -0.5059 7.4731 26 1 3.6192 -1.3556 9.5238 27 1 4.3661 -2.8969 7.8072 28 6 1.2689 -5.2358 1.6271 29 1 -0.3634 -0.4301 0.9333 30 1 -0.3633 1.0234 -0.0943 31 1 -0.3633 -0.5932 -0.8392 32 1 2.8873 1.3627 -0.8900 33 1 1.5523 2.1335 -0.0005 34 1 2.8872 1.3628 0.8901 35 1 3.2476 -1.1544 -0.0958 36 1 3.0550 -3.5972 -0.1567 37 1 1.5968 -6.9051 -0.4869 38 1 2.1790 -5.7038 -1.6641 39 1 4.0829 -6.8588 -0.5918 40 1 4.0610 -5.1376 -0.1364 41 1 5.2727 -5.4703 2.0162 42 1 4.8146 -6.8219 3.0798 43 1 5.5096 -7.1490 1.4742 44 1 1.8158 -3.1518 3.3686 45 1 1.3040 -4.5253 4.3784 46 1 1.2831 -0.2562 8.6045 47 1 0.8228 -4.4117 2.1839 48 1 0.6516 -6.1279 1.7339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572611341.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -49.242835 kcal Electronic energy + Delta-G solvation = -28749.301470 eV Core-core repulsion = 24931.123658 eV Total energy + Delta-G solvation = -3818.177812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79650 -39.51585 -37.52607 -35.47752 -34.27266 -33.29208 -32.40667 -31.50376 -29.16043 -28.11399 -27.69028 -26.96092 -25.57016 -24.69422 -22.47075 -21.88705 -20.55149 -18.89317 -18.83426 -17.57511 -17.02855 -16.39687 -16.31583 -15.69961 -15.44626 -14.96049 -14.94469 -14.49193 -14.42293 -14.14320 -13.97663 -13.62475 -13.53001 -13.33336 -13.13164 -12.99952 -12.75962 -12.54140 -12.34118 -12.27152 -12.12232 -12.09544 -11.76050 -11.56440 -11.44909 -11.24734 -11.23036 -11.07446 -10.99608 -10.78440 -10.54413 -9.83001 -9.62021 -9.35928 -9.01794 -8.97692 -8.76919 -8.46167 -8.37685 -6.88427 -6.25593 -3.96876 1.37582 2.72838 2.95362 3.13135 3.22655 3.33530 3.34298 3.51028 3.61396 4.34675 4.40449 4.47538 4.58807 4.68883 4.72402 4.80236 4.83364 5.06731 5.09610 5.13214 5.18016 5.26957 5.29610 5.39812 5.42624 5.43978 5.54550 5.57875 5.62600 5.68304 5.74588 5.79066 5.80124 5.81874 5.87038 5.87845 6.07590 6.09956 6.23399 6.38077 6.45847 6.49791 6.52637 6.78473 7.48133 7.53163 7.97628 8.27546 8.46534 8.50337 9.20428 10.83831 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.004785 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.203699 B = 5849.805646 C = 8275.164975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.024 4.024 3 C -0.129 4.129 4 C -0.243 4.243 5 C 0.549 3.451 6 O -0.540 6.540 7 N -0.721 5.721 8 C 0.133 3.867 9 H 0.100 0.900 10 C -0.126 4.126 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.069 0.931 14 C -0.137 4.137 15 N -0.612 5.612 16 C 0.536 3.464 17 O -0.512 6.512 18 C -0.121 4.121 19 S -0.142 6.142 20 C -0.519 4.519 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.236 1.236 28 C 0.094 3.906 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.270 0.730 47 H 0.096 0.904 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -6.877 -21.982 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.025 4.025 3 C -0.186 4.186 4 C -0.264 4.264 5 C 0.340 3.660 6 O -0.419 6.419 7 N -0.373 5.373 8 C 0.028 3.972 9 H 0.118 0.882 10 C -0.164 4.164 11 C -0.171 4.171 12 C 0.042 3.958 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.348 5.348 16 C 0.324 3.676 17 O -0.387 6.387 18 C -0.272 4.272 19 S 0.084 5.916 20 C -0.666 4.666 21 H 0.105 0.895 22 C -0.112 4.112 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.193 1.193 26 H -0.200 1.200 27 H -0.160 1.160 28 C -0.030 4.030 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.114 0.886 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.247 -7.000 -21.142 22.507 hybrid contribution -0.328 0.347 0.002 0.477 sum 2.919 -6.653 -21.141 22.354 Atomic orbital electron populations 1.21093 0.90802 1.01144 1.04413 1.22576 0.96924 0.94500 0.88539 1.21055 1.00431 0.94129 1.02976 1.22245 1.00088 0.92020 1.12072 1.18561 0.87047 0.84241 0.76188 1.90777 1.14740 1.87627 1.48806 1.45945 1.12300 1.05093 1.73983 1.21269 0.97288 0.83457 0.95226 0.88234 1.21807 0.96272 0.98597 0.99733 1.22028 0.96794 1.02385 0.95888 1.21235 0.92491 0.91291 0.90816 0.91315 1.22216 0.93305 1.02842 1.00993 1.48063 1.15635 1.42861 1.28241 1.20218 0.88022 0.79695 0.79626 1.90739 1.17903 1.62223 1.67858 1.23345 1.01882 1.00871 1.01096 1.84662 1.20612 1.58524 1.27807 1.22315 0.98842 1.30419 1.15040 0.89478 1.24699 0.97342 0.93655 0.95536 1.69945 1.32791 1.27565 1.21430 0.86746 0.84483 0.81422 0.79248 1.19295 1.19982 1.15964 1.22211 0.83823 1.02261 0.94739 0.89095 0.92897 0.90616 0.90814 0.91145 0.90076 0.85919 0.76564 0.90121 0.90951 0.90440 0.91573 0.90800 0.90746 0.94343 0.88984 0.88875 0.92006 0.88575 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.34 36.01 0.30 -1.16 16 2 C -0.02 -0.28 6.11 -101.17 -0.62 -0.90 16 3 C -0.13 -1.20 10.07 36.01 0.36 -0.84 16 4 C -0.24 -2.95 9.67 -37.80 -0.37 -3.31 16 5 C 0.55 7.33 7.66 -12.66 -0.10 7.24 16 6 O -0.54 -8.61 12.86 5.27 0.07 -8.54 16 7 N -0.72 -7.77 4.91 -54.87 -0.27 -8.04 16 8 C 0.13 1.29 2.81 -67.81 -0.19 1.10 16 9 H 0.10 1.01 7.57 -51.93 -0.39 0.61 16 10 C -0.13 -0.89 5.59 -26.69 -0.15 -1.04 16 11 C -0.13 -1.04 5.21 -26.61 -0.14 -1.18 16 12 C 0.14 1.56 3.49 -67.60 -0.24 1.33 16 13 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 14 C -0.14 -1.74 7.59 37.16 0.28 -1.45 16 15 N -0.61 -8.12 2.89 -165.16 -0.48 -8.60 16 16 C 0.54 9.61 7.62 -10.98 -0.08 9.53 16 17 O -0.51 -10.41 11.26 5.56 0.06 -10.35 16 18 C -0.12 -2.49 4.56 36.01 0.16 -2.33 16 19 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 21 H 0.09 2.72 8.03 -52.48 -0.42 2.29 16 22 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 23 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 24 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 28 C 0.09 1.10 5.93 -3.67 -0.02 1.07 16 29 H 0.09 1.36 7.08 -51.93 -0.37 0.99 16 30 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 31 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.40 3.80 6.75 -40.82 -0.28 3.53 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.56 6.40 -51.93 -0.33 0.23 16 41 H 0.07 1.10 6.73 -51.93 -0.35 0.75 16 42 H 0.07 1.14 6.77 -51.93 -0.35 0.79 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 1.90 7.48 -51.91 -0.39 1.51 16 45 H 0.09 1.85 8.11 -51.92 -0.42 1.43 16 46 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 47 H 0.10 1.37 5.97 -51.93 -0.31 1.06 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -34.31 388.55 -9.03 -43.34 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.76 Total: 5.01 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.58 Total: -4.14 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.03 Total: -42.82 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.13 Total: -18.89 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.31 -9.03 -43.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572611341.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.906 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds