Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 120.00145 * 2 1 4 4 C 1.33000 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47099 * 119.99796 * 352.13876 * 4 2 1 6 6 O 1.21611 * 120.00290 * 0.25374 * 5 4 2 7 7 N 1.34780 * 119.99906 * 180.25661 * 5 4 2 8 8 C 1.46500 * 120.00164 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.49575 * 35.06403 * 8 7 5 10 10 C 1.53038 * 109.49509 * 155.12818 * 8 7 5 11 11 C 1.53042 * 109.53466 * 181.28486 * 10 8 7 12 12 C 1.53194 * 109.34110 * 298.68223 * 11 10 8 13 13 H 1.09006 * 109.58354 * 294.83803 * 12 11 10 14 14 C 1.52997 * 109.58643 * 174.40908 * 12 11 10 15 15 N 1.46921 * 108.77381 * 54.61962 * 12 11 10 16 16 C 1.34780 * 120.62937 * 126.41112 * 15 12 11 17 17 O 1.21274 * 120.00079 * 4.09547 * 16 15 12 18 18 C 1.50699 * 119.99679 * 184.08732 * 16 15 12 19 19 S 1.81003 * 109.46747 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00145 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99799 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00369 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99895 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47281 * 89.99827 * 24 22 20 26 26 H 1.48497 * 109.47202 * 210.00159 * 24 22 20 27 27 H 1.48505 * 109.47097 * 330.00145 * 24 22 20 28 28 C 1.46924 * 118.74010 * 306.39544 * 15 12 11 29 29 H 1.08999 * 109.47595 * 263.81646 * 1 2 3 30 30 H 1.09007 * 109.47020 * 23.81370 * 1 2 3 31 31 H 1.08997 * 109.47067 * 143.80740 * 1 2 3 32 32 H 1.09000 * 109.46961 * 269.99728 * 3 2 1 33 33 H 1.09001 * 109.47058 * 29.99294 * 3 2 1 34 34 H 1.09000 * 109.46990 * 149.99622 * 3 2 1 35 35 H 1.08001 * 119.99938 * 172.13424 * 4 2 1 36 36 H 0.97007 * 119.99620 * 359.97438 * 7 5 4 37 37 H 1.09006 * 109.43141 * 61.28035 * 10 8 7 38 38 H 1.08994 * 109.48735 * 301.31927 * 10 8 7 39 39 H 1.09000 * 109.49389 * 178.72046 * 11 10 8 40 40 H 1.08995 * 109.49860 * 58.65677 * 11 10 8 41 41 H 1.08992 * 109.46984 * 52.67600 * 14 12 11 42 42 H 1.09007 * 109.46666 * 172.67437 * 14 12 11 43 43 H 1.08994 * 109.46840 * 292.67326 * 14 12 11 44 44 H 1.08995 * 109.47666 * 299.99853 * 18 16 15 45 45 H 1.09003 * 109.47332 * 60.00552 * 18 16 15 46 46 H 0.96999 * 120.00051 * 180.02562 * 23 22 20 47 47 H 1.09009 * 109.58931 * 173.39524 * 28 15 12 48 48 H 1.09006 * 109.58914 * 293.67103 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4467 -2.4196 0.1753 6 8 0.2386 -2.4149 0.3148 7 7 2.1212 -3.5865 0.1810 8 6 1.3990 -4.8492 0.3557 9 1 0.4265 -4.7825 -0.1320 10 6 2.2063 -5.9898 -0.2683 11 6 1.4378 -7.3043 -0.1147 12 6 1.2431 -7.6071 1.3744 13 1 2.2120 -7.7860 1.8406 14 6 0.3572 -8.8442 1.5346 15 7 0.5960 -6.4520 2.0111 16 6 -0.5336 -6.6075 2.7297 17 8 -0.9846 -7.7174 2.9179 18 6 -1.2361 -5.4021 3.2994 19 16 -2.7092 -5.9350 4.2062 20 6 -3.3174 -4.3723 4.7473 21 1 -2.7880 -3.4675 4.4876 22 6 -4.4775 -4.3041 5.5064 23 7 -5.1230 -5.4068 5.8225 24 14 -5.1227 -2.6474 6.0794 25 1 -6.0534 -2.0992 5.0603 26 1 -5.8420 -2.8150 7.3676 27 1 -3.9854 -1.7108 6.2657 28 6 1.2038 -5.1241 1.8500 29 1 -0.3634 -0.1107 1.0216 30 1 -0.3633 0.9402 -0.4150 31 1 -0.3633 -0.8293 -0.6068 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0648 0.5137 34 1 3.2129 1.1747 0.5139 35 1 3.2443 -1.1563 -0.1275 36 1 3.0848 -3.5903 0.0695 37 1 3.1692 -6.0709 0.2362 38 1 2.3672 -5.7848 -1.3266 39 1 2.0028 -8.1124 -0.5793 40 1 0.4650 -7.2157 -0.5982 41 1 0.7662 -9.6631 0.9430 42 1 0.3257 -9.1349 2.5848 43 1 -0.6515 -8.6157 1.1905 44 1 -0.5636 -4.8759 3.9767 45 1 -1.5297 -4.7356 2.4884 46 1 -5.9338 -5.3591 6.3526 47 1 0.5467 -4.3670 2.2781 48 1 2.1684 -5.0997 2.3573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572611343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -49.464845 kcal Electronic energy + Delta-G solvation = -27935.378386 eV Core-core repulsion = 24117.190947 eV Total energy + Delta-G solvation = -3818.187439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61972 -39.68599 -37.43040 -35.69941 -34.58622 -33.16470 -32.36121 -31.49409 -29.00123 -28.28893 -27.86969 -26.68974 -25.40086 -24.64809 -22.45716 -21.43991 -20.98321 -19.08934 -18.80493 -17.55870 -17.12756 -16.59383 -16.14508 -15.67426 -15.32133 -15.02245 -14.73953 -14.55821 -14.52112 -14.21413 -14.00210 -13.85475 -13.66770 -13.33062 -13.00919 -12.90882 -12.64486 -12.53805 -12.41579 -12.22954 -12.08270 -11.93832 -11.77283 -11.76101 -11.31342 -11.12182 -11.03052 -11.00385 -10.93332 -10.82891 -10.69206 -9.73755 -9.73141 -9.44878 -9.20903 -8.99809 -8.64908 -8.35795 -8.15481 -6.42228 -6.15083 -3.84490 1.15558 2.77399 3.09898 3.14640 3.17021 3.27484 3.31963 3.36204 3.68733 4.26879 4.39752 4.50866 4.59387 4.59600 4.69973 4.85386 4.94742 5.06550 5.10312 5.14628 5.18693 5.20181 5.23116 5.33278 5.43629 5.48553 5.52953 5.59936 5.62477 5.70103 5.74112 5.75696 5.83162 5.91029 5.92306 5.98289 6.00002 6.24024 6.26209 6.30402 6.35836 6.41309 6.55966 6.88447 7.36264 7.61708 7.67553 8.14485 8.43072 8.64696 9.30662 10.92469 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007149 B = 0.004179 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3915.838181 B = 6698.568224 C =10352.655954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.025 4.025 3 C -0.129 4.129 4 C -0.244 4.244 5 C 0.543 3.457 6 O -0.528 6.528 7 N -0.725 5.725 8 C 0.132 3.868 9 H 0.095 0.905 10 C -0.124 4.124 11 C -0.128 4.128 12 C 0.144 3.856 13 H 0.067 0.933 14 C -0.138 4.138 15 N -0.615 5.615 16 C 0.538 3.462 17 O -0.507 6.507 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.869 5.869 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.100 3.900 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.267 0.733 47 H 0.095 0.905 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.666 6.570 -15.565 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.026 4.026 3 C -0.185 4.185 4 C -0.265 4.265 5 C 0.333 3.667 6 O -0.407 6.407 7 N -0.377 5.377 8 C 0.026 3.974 9 H 0.113 0.887 10 C -0.162 4.162 11 C -0.167 4.167 12 C 0.041 3.959 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.352 5.352 16 C 0.326 3.674 17 O -0.382 6.382 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.680 4.680 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.505 5.505 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.025 4.025 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.956 4.825 -15.075 25.471 hybrid contribution 0.840 2.505 0.066 2.642 sum 20.796 7.330 -15.009 26.673 Atomic orbital electron populations 1.21256 0.90628 1.02703 1.04182 1.22638 0.97100 0.94421 0.88474 1.21030 1.00126 0.94546 1.02824 1.22281 1.00069 0.91990 1.12112 1.18632 0.87335 0.84168 0.76544 1.90835 1.14010 1.87116 1.48705 1.45878 1.10916 1.05679 1.75201 1.21299 0.97377 0.82652 0.96070 0.88728 1.21789 0.98949 0.94294 1.01203 1.21994 1.01303 0.96665 0.96740 1.21242 0.96430 0.86558 0.91685 0.91491 1.22198 0.99678 0.94236 1.03395 1.48089 1.26573 1.07422 1.53109 1.20286 0.79159 0.90806 0.77153 1.90735 1.64758 1.25444 1.57227 1.23607 1.03916 0.98990 1.03771 1.85270 1.21463 1.12155 1.64553 1.22870 1.13207 0.93045 1.38866 0.90990 1.24968 0.95626 0.97606 0.95311 1.70021 1.17249 1.26938 1.36259 0.86191 0.78922 0.82429 0.78120 1.20258 1.20787 1.19706 1.22048 0.99322 0.85220 0.95868 0.89938 0.92648 0.88703 0.90444 0.90708 0.91090 0.85807 0.76670 0.91236 0.91012 0.90275 0.90964 0.94200 0.90391 0.90957 0.89661 0.89085 0.92282 0.88693 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 8.49 36.01 0.31 -1.12 16 2 C -0.02 -0.22 6.11 -101.16 -0.62 -0.84 16 3 C -0.13 -0.76 10.01 36.01 0.36 -0.40 16 4 C -0.24 -2.13 9.62 -37.81 -0.36 -2.50 16 5 C 0.54 6.20 7.65 -12.66 -0.10 6.10 16 6 O -0.53 -8.24 12.83 5.27 0.07 -8.18 16 7 N -0.73 -6.36 5.08 -54.88 -0.28 -6.64 16 8 C 0.13 1.38 2.60 -67.81 -0.18 1.20 16 9 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 10 C -0.12 -0.97 5.36 -26.69 -0.14 -1.11 16 11 C -0.13 -1.20 5.37 -26.61 -0.14 -1.34 16 12 C 0.14 1.76 3.49 -67.60 -0.24 1.52 16 13 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 14 C -0.14 -1.96 7.61 37.16 0.28 -1.67 16 15 N -0.61 -9.15 2.97 -165.22 -0.49 -9.65 16 16 C 0.54 10.60 7.54 -10.98 -0.08 10.52 16 17 O -0.51 -11.33 11.39 5.56 0.06 -11.27 16 18 C -0.15 -3.34 4.50 36.01 0.16 -3.18 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.76 9.50 30.94 0.29 -15.47 16 21 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -26.82 13.22 55.49 0.73 -26.09 16 24 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.10 1.26 5.92 -3.71 -0.02 1.24 16 29 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.09 1.23 6.04 -51.93 -0.31 0.91 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.40 2.20 8.59 -40.82 -0.35 1.85 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.29 6.75 -51.92 -0.35 0.94 16 43 H 0.07 1.22 6.74 -51.93 -0.35 0.87 16 44 H 0.09 1.78 7.78 -51.92 -0.40 1.37 16 45 H 0.09 1.98 7.86 -51.92 -0.41 1.58 16 46 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.09 1.42 5.93 -51.92 -0.31 1.11 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -35.84 395.10 -9.66 -45.51 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.91 Total: 2.12 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.57 Total: -4.96 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.04 Total: -42.38 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.13 Total: -19.44 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.84 -9.66 -45.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572611343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.957 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds