Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50702 * 120.00145 * 2 1 4 4 C 1.33000 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47099 * 119.99796 * 352.13876 * 4 2 1 6 6 O 1.21611 * 120.00290 * 0.25374 * 5 4 2 7 7 N 1.34780 * 119.99906 * 180.25661 * 5 4 2 8 8 C 1.46500 * 120.00164 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.49575 * 35.06403 * 8 7 5 10 10 C 1.53038 * 109.49509 * 155.12818 * 8 7 5 11 11 C 1.53042 * 109.53466 * 181.28486 * 10 8 7 12 12 C 1.53194 * 109.34110 * 298.68223 * 11 10 8 13 13 H 1.09006 * 109.58354 * 294.83803 * 12 11 10 14 14 C 1.52997 * 109.58643 * 174.40908 * 12 11 10 15 15 N 1.46921 * 108.77381 * 54.61962 * 12 11 10 16 16 C 1.34780 * 120.62937 * 126.41112 * 15 12 11 17 17 O 1.21274 * 120.00079 * 4.09547 * 16 15 12 18 18 C 1.50699 * 119.99679 * 184.08732 * 16 15 12 19 19 S 1.81003 * 109.46747 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00145 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99799 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00369 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99895 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47281 * 89.99827 * 24 22 20 26 26 H 1.48497 * 109.47202 * 210.00159 * 24 22 20 27 27 H 1.48505 * 109.47097 * 330.00145 * 24 22 20 28 28 C 1.46924 * 118.74010 * 306.39544 * 15 12 11 29 29 H 1.08999 * 109.47595 * 263.81646 * 1 2 3 30 30 H 1.09007 * 109.47020 * 23.81370 * 1 2 3 31 31 H 1.08997 * 109.47067 * 143.80740 * 1 2 3 32 32 H 1.09000 * 109.46961 * 269.99728 * 3 2 1 33 33 H 1.09001 * 109.47058 * 29.99294 * 3 2 1 34 34 H 1.09000 * 109.46990 * 149.99622 * 3 2 1 35 35 H 1.08001 * 119.99938 * 172.13424 * 4 2 1 36 36 H 0.97007 * 119.99620 * 359.97438 * 7 5 4 37 37 H 1.09006 * 109.43141 * 61.28035 * 10 8 7 38 38 H 1.08994 * 109.48735 * 301.31927 * 10 8 7 39 39 H 1.09000 * 109.49389 * 178.72046 * 11 10 8 40 40 H 1.08995 * 109.49860 * 58.65677 * 11 10 8 41 41 H 1.08992 * 109.46984 * 52.67600 * 14 12 11 42 42 H 1.09007 * 109.46666 * 172.67437 * 14 12 11 43 43 H 1.08994 * 109.46840 * 292.67326 * 14 12 11 44 44 H 1.08995 * 109.47666 * 299.99853 * 18 16 15 45 45 H 1.09003 * 109.47332 * 60.00552 * 18 16 15 46 46 H 0.96999 * 120.00051 * 180.02562 * 23 22 20 47 47 H 1.09009 * 109.58931 * 173.39524 * 28 15 12 48 48 H 1.09006 * 109.58914 * 293.67103 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4467 -2.4196 0.1753 6 8 0.2386 -2.4149 0.3148 7 7 2.1212 -3.5865 0.1810 8 6 1.3990 -4.8492 0.3557 9 1 0.4265 -4.7825 -0.1320 10 6 2.2063 -5.9898 -0.2683 11 6 1.4378 -7.3043 -0.1147 12 6 1.2431 -7.6071 1.3744 13 1 2.2120 -7.7860 1.8406 14 6 0.3572 -8.8442 1.5346 15 7 0.5960 -6.4520 2.0111 16 6 -0.5336 -6.6075 2.7297 17 8 -0.9846 -7.7174 2.9179 18 6 -1.2361 -5.4021 3.2994 19 16 -2.7092 -5.9350 4.2062 20 6 -3.3174 -4.3723 4.7473 21 1 -2.7880 -3.4675 4.4876 22 6 -4.4775 -4.3041 5.5064 23 7 -5.1230 -5.4068 5.8225 24 14 -5.1227 -2.6474 6.0794 25 1 -6.0534 -2.0992 5.0603 26 1 -5.8420 -2.8150 7.3676 27 1 -3.9854 -1.7108 6.2657 28 6 1.2038 -5.1241 1.8500 29 1 -0.3634 -0.1107 1.0216 30 1 -0.3633 0.9402 -0.4150 31 1 -0.3633 -0.8293 -0.6068 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0648 0.5137 34 1 3.2129 1.1747 0.5139 35 1 3.2443 -1.1563 -0.1275 36 1 3.0848 -3.5903 0.0695 37 1 3.1692 -6.0709 0.2362 38 1 2.3672 -5.7848 -1.3266 39 1 2.0028 -8.1124 -0.5793 40 1 0.4650 -7.2157 -0.5982 41 1 0.7662 -9.6631 0.9430 42 1 0.3257 -9.1349 2.5848 43 1 -0.6515 -8.6157 1.1905 44 1 -0.5636 -4.8759 3.9767 45 1 -1.5297 -4.7356 2.4884 46 1 -5.9338 -5.3591 6.3526 47 1 0.5467 -4.3670 2.2781 48 1 2.1684 -5.0997 2.3573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001572611343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -73.865614 kcal Electronic energy + Delta-G solvation = -27936.436483 eV Core-core repulsion = 24117.190947 eV Total energy + Delta-G solvation = -3819.245536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75450 -40.76117 -38.59736 -36.48437 -35.57031 -34.63786 -34.37371 -32.43281 -30.51810 -29.09885 -28.62951 -27.83276 -27.58803 -25.63166 -23.48133 -22.40491 -21.87464 -20.49459 -19.67382 -19.46618 -17.93506 -17.90438 -17.42001 -16.93181 -16.88303 -16.47215 -16.03940 -15.89137 -15.42079 -15.29957 -14.97291 -14.95713 -14.65786 -14.57851 -14.50316 -14.21320 -13.75979 -13.51995 -13.34019 -13.25782 -13.22793 -13.16713 -13.08537 -12.93172 -12.68634 -12.64922 -12.40638 -12.27803 -12.05196 -11.97139 -11.75508 -11.69826 -11.19096 -10.67098 -10.37655 -10.33424 -10.15738 -9.94063 -9.51330 -8.72028 -8.39431 -6.17849 0.42287 1.19726 1.37546 1.39134 1.50611 1.52886 1.91545 2.22630 2.33359 2.35581 2.94050 3.20503 3.59203 3.61389 3.79039 3.84493 3.86775 3.94944 4.05374 4.13996 4.16951 4.32972 4.33514 4.36664 4.41748 4.58711 4.64323 4.65153 4.67921 4.76187 4.80902 4.84209 4.91102 4.99005 5.05033 5.07917 5.13678 5.19112 5.32780 5.35751 5.36600 5.49688 5.57324 5.67347 5.71621 6.14625 6.22491 6.66040 7.01384 7.13257 7.35729 8.70058 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007149 B = 0.004179 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3915.838181 B = 6698.568224 C =10352.655954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 C -0.123 4.123 4 C -0.242 4.242 5 C 0.532 3.468 6 O -0.582 6.582 7 N -0.705 5.705 8 C 0.138 3.862 9 H 0.057 0.943 10 C -0.113 4.113 11 C -0.122 4.122 12 C 0.138 3.862 13 H 0.098 0.902 14 C -0.133 4.133 15 N -0.602 5.602 16 C 0.534 3.466 17 O -0.541 6.541 18 C -0.125 4.125 19 S -0.136 6.136 20 C -0.551 4.551 21 H 0.072 0.928 22 C 0.018 3.982 23 N -0.908 5.908 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.270 1.270 27 H -0.261 1.261 28 C 0.097 3.903 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.421 0.579 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.273 0.727 47 H 0.063 0.937 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.662 8.239 -16.943 31.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.034 4.034 3 C -0.180 4.180 4 C -0.263 4.263 5 C 0.323 3.677 6 O -0.464 6.464 7 N -0.358 5.358 8 C 0.032 3.968 9 H 0.076 0.924 10 C -0.150 4.150 11 C -0.161 4.161 12 C 0.037 3.963 13 H 0.116 0.884 14 C -0.190 4.190 15 N -0.337 5.337 16 C 0.321 3.679 17 O -0.419 6.419 18 C -0.276 4.276 19 S 0.091 5.909 20 C -0.699 4.699 21 H 0.090 0.910 22 C -0.187 4.187 23 N -0.544 5.544 24 Si 0.818 3.182 25 H -0.193 1.193 26 H -0.195 1.195 27 H -0.186 1.186 28 C -0.027 4.027 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.181 0.819 36 H 0.259 0.741 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 24.045 6.492 -16.492 29.871 hybrid contribution -0.345 1.937 0.421 2.011 sum 23.700 8.429 -16.072 29.850 Atomic orbital electron populations 1.21147 0.92910 1.02461 1.02215 1.22860 0.95872 0.96308 0.88327 1.21059 1.00290 0.92519 1.04085 1.22491 1.01681 0.90275 1.11808 1.19267 0.86921 0.85712 0.75758 1.90835 1.16507 1.87894 1.51142 1.45672 1.11847 1.04354 1.73896 1.21104 0.96920 0.84634 0.94181 0.92449 1.21766 0.99160 0.91527 1.02594 1.21974 1.01184 0.98879 0.94036 1.21591 0.96524 0.84316 0.93885 0.88399 1.22032 0.98550 0.96522 1.01873 1.48062 1.24778 1.09557 1.51342 1.19911 0.80583 0.89255 0.78108 1.90743 1.66196 1.26012 1.58945 1.23392 1.01232 1.00153 1.02844 1.85306 1.25638 1.13849 1.66118 1.23145 1.14085 0.92980 1.39653 0.90960 1.26088 0.95494 1.02210 0.94923 1.70165 1.17787 1.29659 1.36822 0.84993 0.78482 0.76764 0.77989 1.19283 1.19461 1.18552 1.22234 0.99616 0.83025 0.97865 0.92492 0.90940 0.91377 0.88806 0.90622 0.89413 0.81861 0.74095 0.88033 0.88923 0.86815 0.93136 0.90768 0.93349 0.94551 0.88734 0.89646 0.91791 0.91798 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.49 71.24 0.60 -2.36 16 2 C -0.03 -0.52 6.11 -17.61 -0.11 -0.63 16 3 C -0.12 -1.09 10.01 71.24 0.71 -0.38 16 4 C -0.24 -3.70 9.62 23.43 0.23 -3.47 16 5 C 0.53 11.79 7.65 86.57 0.66 12.45 16 6 O -0.58 -19.19 12.83 -4.06 -0.05 -19.24 16 7 N -0.71 -10.70 5.08 -445.78 -2.26 -12.96 16 8 C 0.14 2.68 2.60 45.07 0.12 2.79 16 9 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 10 C -0.11 -1.28 5.36 30.62 0.16 -1.12 16 11 C -0.12 -1.90 5.37 30.67 0.16 -1.73 16 12 C 0.14 3.09 3.49 44.98 0.16 3.25 16 13 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 14 C -0.13 -3.75 7.61 71.98 0.55 -3.20 16 15 N -0.60 -17.81 2.97 -795.03 -2.36 -20.17 16 16 C 0.53 22.10 7.54 87.66 0.66 22.76 16 17 O -0.54 -25.71 11.39 -3.01 -0.03 -25.75 16 18 C -0.12 -5.82 4.50 71.24 0.32 -5.50 16 19 S -0.14 -8.14 20.57 -56.49 -1.16 -9.30 16 20 C -0.55 -33.97 9.50 67.95 0.65 -33.32 16 21 H 0.07 4.29 7.80 -2.91 -0.02 4.27 16 22 C 0.02 1.07 5.49 84.86 0.47 1.54 16 23 N -0.91 -57.77 13.22 21.65 0.29 -57.48 16 24 Si 1.00 46.12 29.55 68.60 2.03 48.15 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 28 C 0.10 2.34 5.92 86.36 0.51 2.85 16 29 H 0.06 1.54 8.07 -2.39 -0.02 1.52 16 30 H 0.07 1.30 8.09 -2.38 -0.02 1.28 16 31 H 0.07 1.91 6.04 -2.39 -0.01 1.89 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 34 H 0.09 0.52 8.07 -2.39 -0.02 0.50 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.42 2.79 8.59 -92.70 -0.80 1.99 16 37 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.64 6.75 -2.38 -0.02 1.63 16 43 H 0.04 1.28 6.74 -2.39 -0.02 1.26 16 44 H 0.09 4.15 7.78 -2.40 -0.02 4.13 16 45 H 0.09 4.02 7.86 -2.39 -0.02 4.00 16 46 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 47 H 0.06 1.97 5.93 -2.38 -0.01 1.96 16 48 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -86.49 395.10 2.45 -84.04 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.16 Total: 18.78 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.85 Total: -6.06 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -4.34 Total: -90.62 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.09 Total: -44.99 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.30 kcal Total: -86.49 2.45 -84.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572611343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.170 kcal (2) G-P(sol) polarization free energy of solvation -86.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds