Wall clock time and date at job start Sat Apr 11 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.01256 * 2 1 4 4 C 1.54266 * 110.02839 * 121.44090 * 2 1 3 5 5 C 1.54889 * 104.19276 * 142.90072 * 4 2 1 6 6 C 1.54896 * 102.74791 * 322.05336 * 5 4 2 7 7 H 1.08997 * 110.59750 * 279.20931 * 6 5 4 8 8 C 1.50698 * 110.48431 * 156.62143 * 6 5 4 9 9 O 1.21286 * 120.00016 * 245.22490 * 8 6 5 10 10 N 1.34782 * 120.00160 * 65.22577 * 8 6 5 11 11 C 1.46493 * 119.99988 * 179.97438 * 10 8 6 12 12 H 1.08993 * 112.91094 * 23.75220 * 11 10 8 13 13 C 1.53776 * 113.61370 * 155.00439 * 11 10 8 14 14 C 1.53779 * 87.08542 * 89.11616 * 13 11 10 15 15 H 1.08998 * 113.61358 * 270.80403 * 14 13 11 16 16 N 1.46497 * 113.61873 * 139.98365 * 14 13 11 17 17 C 1.34778 * 120.00309 * 155.00463 * 16 14 13 18 18 O 1.21276 * 119.99491 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99778 * 180.02562 * 17 16 14 20 20 S 1.81004 * 109.46742 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99907 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99736 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99832 * 180.27629 * 21 20 19 24 24 N 1.31631 * 119.99781 * 179.72124 * 23 21 20 25 25 Si 1.86800 * 119.99986 * 359.71904 * 23 21 20 26 26 H 1.48510 * 109.47082 * 90.00406 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00067 * 25 23 21 28 28 H 1.48489 * 109.47333 * 330.00310 * 25 23 21 29 29 C 1.53781 * 87.08005 * 25.43362 * 14 13 11 30 30 C 1.53873 * 110.03478 * 238.61087 * 2 1 3 31 31 H 1.09008 * 109.46913 * 181.38582 * 1 2 3 32 32 H 1.09000 * 109.47220 * 301.39111 * 1 2 3 33 33 H 1.08997 * 109.46781 * 61.39385 * 1 2 3 34 34 H 1.08999 * 110.48598 * 261.57325 * 4 2 1 35 35 H 1.08995 * 110.48927 * 24.08563 * 4 2 1 36 36 H 1.09002 * 110.75546 * 203.74134 * 5 4 2 37 37 H 1.09005 * 110.75967 * 80.37101 * 5 4 2 38 38 H 0.96996 * 119.99818 * 0.02562 * 10 8 6 39 39 H 1.09002 * 113.61588 * 334.56836 * 13 11 10 40 40 H 1.09001 * 113.61707 * 203.66120 * 13 11 10 41 41 H 0.97005 * 119.99622 * 334.99663 * 16 14 13 42 42 H 1.09000 * 109.47396 * 59.99696 * 19 17 16 43 43 H 1.09001 * 109.47080 * 299.99119 * 19 17 16 44 44 H 0.97000 * 119.99427 * 179.97438 * 24 23 21 45 45 H 1.08997 * 113.61728 * 89.11814 * 29 14 13 46 46 H 1.08998 * 113.61770 * 220.02432 * 29 14 13 47 47 H 1.08998 * 110.02912 * 121.43235 * 30 2 1 48 48 H 1.08997 * 110.03226 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3137 -1.5010 0.7186 6 6 2.8875 -1.9403 -0.7043 7 1 2.2779 -2.8428 -0.6605 8 6 4.0991 -2.1653 -1.5718 9 8 4.2985 -1.4514 -2.5319 10 7 4.9610 -3.1598 -1.2809 11 6 6.1385 -3.3788 -2.1245 12 1 6.4408 -2.4856 -2.6712 13 6 7.2983 -4.0762 -1.3944 14 6 6.6696 -5.4091 -1.8336 15 1 5.9398 -5.8019 -1.1257 16 7 7.6523 -6.4116 -2.2527 17 6 7.3503 -7.7231 -2.1794 18 8 6.2652 -8.0732 -1.7661 19 6 8.3614 -8.7542 -2.6100 20 16 7.6639 -10.4103 -2.3930 21 6 9.0176 -11.3884 -2.9550 22 1 9.9249 -10.9107 -3.2940 23 6 8.9154 -12.7726 -2.9678 24 7 9.9246 -13.5030 -3.3928 25 14 7.3458 -13.5987 -2.3819 26 1 6.4176 -13.7679 -3.5288 27 1 7.6712 -14.9292 -1.8081 28 1 6.7008 -12.7561 -1.3433 29 6 6.0404 -4.6361 -3.0047 30 6 2.0572 -0.7529 -1.2340 31 1 -0.3633 -1.0274 0.0249 32 1 -0.3634 0.5353 0.8772 33 1 -0.3633 0.4920 -0.9022 34 1 2.3296 -0.0545 2.0255 35 1 1.3133 -1.4650 1.5974 36 1 3.5326 -2.3684 1.3413 37 1 4.1711 -0.8292 0.6749 38 1 4.8013 -3.7309 -0.5133 39 1 7.2893 -3.9239 -0.3151 40 1 8.2737 -3.8852 -1.8417 41 1 8.5202 -6.1314 -2.5830 42 1 9.2611 -8.6568 -2.0024 43 1 8.6131 -8.6003 -3.6593 44 1 9.8533 -14.4704 -3.4014 45 1 6.6719 -4.5980 -3.8923 46 1 5.0160 -4.9356 -3.2254 47 1 2.6868 -0.0944 -1.8324 48 1 1.2231 -1.1188 -1.8327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578446920.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:05 Heat of formation + Delta-G solvation = -78.360350 kcal Electronic energy + Delta-G solvation = -26281.739697 eV Core-core repulsion = 22462.299255 eV Total energy + Delta-G solvation = -3819.440442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91009 -39.81198 -38.49977 -37.56104 -34.28661 -32.79699 -32.45561 -31.57866 -29.42994 -29.20467 -26.07094 -26.01051 -25.63796 -24.36080 -22.50958 -20.85952 -20.56668 -19.91854 -19.68880 -17.89438 -17.85564 -16.76197 -16.44263 -16.22393 -15.73887 -15.45865 -15.10213 -14.99928 -14.86607 -14.25965 -14.01589 -13.92225 -13.82895 -13.57543 -13.36610 -12.99406 -12.85266 -12.81101 -12.56448 -12.36938 -12.19092 -12.06646 -11.58046 -11.28859 -11.27725 -11.20782 -11.14819 -11.11586 -11.02470 -10.91654 -10.83023 -10.57911 -10.07041 -9.87560 -9.56559 -9.40488 -9.03287 -8.96664 -8.52859 -6.94181 -6.30799 -4.02776 2.29391 2.73846 2.76031 2.89392 3.29068 3.32761 3.48435 3.63860 4.01405 4.04345 4.09438 4.25758 4.27114 4.31259 4.61427 4.62848 4.70966 4.73522 4.79461 4.87996 4.99979 5.05529 5.08324 5.12051 5.15971 5.17360 5.31606 5.33307 5.35927 5.42809 5.47531 5.54945 5.58043 5.59454 5.71922 5.72904 5.74422 5.75712 5.81073 5.92484 5.98570 6.00965 6.22664 6.52507 7.13897 7.56563 7.89255 7.92256 8.39699 8.43954 9.15365 10.78434 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.001721 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.912912 B =16267.385953 C =16958.821579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.115 4.115 7 H 0.102 0.898 8 C 0.524 3.476 9 O -0.538 6.538 10 N -0.712 5.712 11 C 0.122 3.878 12 H 0.108 0.892 13 C -0.152 4.152 14 C 0.126 3.874 15 H 0.113 0.887 16 N -0.726 5.726 17 C 0.532 3.468 18 O -0.520 6.520 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 C -0.164 4.164 30 C -0.108 4.108 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.403 0.597 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.401 0.599 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 28.922 8.370 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.137 4.137 7 H 0.120 0.880 8 C 0.311 3.689 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.016 3.984 12 H 0.126 0.874 13 C -0.191 4.191 14 C 0.021 3.979 15 H 0.131 0.869 16 N -0.379 5.379 17 C 0.318 3.682 18 O -0.395 6.395 19 C -0.276 4.276 20 S 0.084 5.916 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.160 1.160 29 C -0.204 4.204 30 C -0.146 4.146 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.235 0.765 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.122 28.660 8.326 33.017 hybrid contribution 1.194 -0.488 -0.220 1.308 sum -12.928 28.172 8.106 32.039 Atomic orbital electron populations 1.21900 0.94880 1.01878 1.01651 1.21769 0.95804 0.99593 0.94510 0.90916 1.22448 0.96849 0.99073 0.97329 1.22487 0.98608 1.00529 0.93534 1.22192 0.94748 1.01211 0.95507 0.88004 1.20605 0.83910 0.79359 0.85056 1.90690 1.75050 1.46514 1.29186 1.45719 1.24948 1.34223 1.31440 1.21666 0.85459 0.98543 0.92743 0.87425 1.23747 0.98693 0.94988 1.01706 1.22495 0.92022 0.86435 0.96996 0.86899 1.45941 1.18539 1.05518 1.67921 1.20336 0.88236 0.82663 0.76954 1.90687 1.23779 1.80367 1.44622 1.23293 1.00940 0.98420 1.04935 1.84780 1.25244 0.95380 1.86187 1.22317 1.01140 0.93734 1.49782 0.89386 1.24713 0.96698 0.96246 0.93626 1.69940 1.30763 1.06162 1.44774 0.86733 0.83615 0.80281 0.81204 1.19201 1.19921 1.15963 1.23963 1.02665 0.95375 0.98425 1.22177 0.99140 0.95881 0.97425 0.92514 0.92744 0.92629 0.91365 0.91085 0.90725 0.90918 0.76264 0.90126 0.88111 0.76468 0.88419 0.88471 0.91930 0.88672 0.90576 0.89797 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.85 37.16 0.33 -0.40 16 2 C -0.10 -0.55 3.50 -89.50 -0.31 -0.87 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -0.58 6.36 -25.07 -0.16 -0.74 16 5 C -0.11 -0.59 6.31 -24.73 -0.16 -0.74 16 6 C -0.12 -0.77 3.25 -90.11 -0.29 -1.06 16 7 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 8 C 0.52 4.83 7.13 -10.98 -0.08 4.75 16 9 O -0.54 -7.01 15.02 5.55 0.08 -6.92 16 10 N -0.71 -5.36 5.25 -53.02 -0.28 -5.64 16 11 C 0.12 0.98 4.32 -67.12 -0.29 0.69 16 12 H 0.11 0.98 7.47 -51.93 -0.39 0.59 16 13 C -0.15 -1.03 7.58 -25.92 -0.20 -1.23 16 14 C 0.13 1.25 4.12 -67.12 -0.28 0.97 16 15 H 0.11 1.28 7.46 -51.93 -0.39 0.89 16 16 N -0.73 -8.45 5.35 -53.02 -0.28 -8.73 16 17 C 0.53 9.01 7.85 -10.99 -0.09 8.93 16 18 O -0.52 -10.79 15.46 5.56 0.09 -10.70 16 19 C -0.13 -2.35 6.16 36.01 0.22 -2.13 16 20 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 21 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 25 Si 0.86 21.65 27.73 -169.99 -4.71 16.93 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 29 C -0.16 -1.55 7.68 -25.92 -0.20 -1.75 16 30 C -0.11 -0.78 5.84 -25.61 -0.15 -0.93 16 31 H 0.06 0.28 8.12 -51.92 -0.42 -0.14 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.32 7.83 -51.93 -0.41 -0.09 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 38 H 0.40 2.26 8.70 -40.82 -0.36 1.91 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.40 3.51 8.73 -40.82 -0.36 3.16 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 43 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.77 6.85 -51.93 -0.36 0.41 16 48 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -35.46 401.68 -9.84 -45.31 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.14 Total: 1.33 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.43 Total: -6.44 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.21 Total: -40.00 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.17 Total: -17.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.46 -9.84 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578446920.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.055 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds