Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.01256 * 2 1 4 4 C 1.54266 * 110.02839 * 121.44090 * 2 1 3 5 5 C 1.54889 * 104.19276 * 142.90072 * 4 2 1 6 6 C 1.54896 * 102.74791 * 322.05336 * 5 4 2 7 7 H 1.08997 * 110.59750 * 279.20931 * 6 5 4 8 8 C 1.50698 * 110.48431 * 156.62143 * 6 5 4 9 9 O 1.21286 * 120.00016 * 245.22490 * 8 6 5 10 10 N 1.34782 * 120.00160 * 65.22577 * 8 6 5 11 11 C 1.46493 * 119.99988 * 179.97438 * 10 8 6 12 12 H 1.08993 * 112.91094 * 23.75220 * 11 10 8 13 13 C 1.53776 * 113.61370 * 155.00439 * 11 10 8 14 14 C 1.53779 * 87.08542 * 89.11616 * 13 11 10 15 15 H 1.08998 * 113.61358 * 270.80403 * 14 13 11 16 16 N 1.46497 * 113.61873 * 139.98365 * 14 13 11 17 17 C 1.34778 * 120.00309 * 155.00463 * 16 14 13 18 18 O 1.21276 * 119.99491 * 359.97438 * 17 16 14 19 19 C 1.50699 * 119.99778 * 180.02562 * 17 16 14 20 20 S 1.81004 * 109.46742 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99907 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99736 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99832 * 180.27629 * 21 20 19 24 24 N 1.31631 * 119.99781 * 179.72124 * 23 21 20 25 25 Si 1.86800 * 119.99986 * 359.71904 * 23 21 20 26 26 H 1.48510 * 109.47082 * 90.00406 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00067 * 25 23 21 28 28 H 1.48489 * 109.47333 * 330.00310 * 25 23 21 29 29 C 1.53781 * 87.08005 * 25.43362 * 14 13 11 30 30 C 1.53873 * 110.03478 * 238.61087 * 2 1 3 31 31 H 1.09008 * 109.46913 * 181.38582 * 1 2 3 32 32 H 1.09000 * 109.47220 * 301.39111 * 1 2 3 33 33 H 1.08997 * 109.46781 * 61.39385 * 1 2 3 34 34 H 1.08999 * 110.48598 * 261.57325 * 4 2 1 35 35 H 1.08995 * 110.48927 * 24.08563 * 4 2 1 36 36 H 1.09002 * 110.75546 * 203.74134 * 5 4 2 37 37 H 1.09005 * 110.75967 * 80.37101 * 5 4 2 38 38 H 0.96996 * 119.99818 * 0.02562 * 10 8 6 39 39 H 1.09002 * 113.61588 * 334.56836 * 13 11 10 40 40 H 1.09001 * 113.61707 * 203.66120 * 13 11 10 41 41 H 0.97005 * 119.99622 * 334.99663 * 16 14 13 42 42 H 1.09000 * 109.47396 * 59.99696 * 19 17 16 43 43 H 1.09001 * 109.47080 * 299.99119 * 19 17 16 44 44 H 0.97000 * 119.99427 * 179.97438 * 24 23 21 45 45 H 1.08997 * 113.61728 * 89.11814 * 29 14 13 46 46 H 1.08998 * 113.61770 * 220.02432 * 29 14 13 47 47 H 1.08998 * 110.02912 * 121.43235 * 30 2 1 48 48 H 1.08997 * 110.03226 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3137 -1.5010 0.7186 6 6 2.8875 -1.9403 -0.7043 7 1 2.2779 -2.8428 -0.6605 8 6 4.0991 -2.1653 -1.5718 9 8 4.2985 -1.4514 -2.5319 10 7 4.9610 -3.1598 -1.2809 11 6 6.1385 -3.3788 -2.1245 12 1 6.4408 -2.4856 -2.6712 13 6 7.2983 -4.0762 -1.3944 14 6 6.6696 -5.4091 -1.8336 15 1 5.9398 -5.8019 -1.1257 16 7 7.6523 -6.4116 -2.2527 17 6 7.3503 -7.7231 -2.1794 18 8 6.2652 -8.0732 -1.7661 19 6 8.3614 -8.7542 -2.6100 20 16 7.6639 -10.4103 -2.3930 21 6 9.0176 -11.3884 -2.9550 22 1 9.9249 -10.9107 -3.2940 23 6 8.9154 -12.7726 -2.9678 24 7 9.9246 -13.5030 -3.3928 25 14 7.3458 -13.5987 -2.3819 26 1 6.4176 -13.7679 -3.5288 27 1 7.6712 -14.9292 -1.8081 28 1 6.7008 -12.7561 -1.3433 29 6 6.0404 -4.6361 -3.0047 30 6 2.0572 -0.7529 -1.2340 31 1 -0.3633 -1.0274 0.0249 32 1 -0.3634 0.5353 0.8772 33 1 -0.3633 0.4920 -0.9022 34 1 2.3296 -0.0545 2.0255 35 1 1.3133 -1.4650 1.5974 36 1 3.5326 -2.3684 1.3413 37 1 4.1711 -0.8292 0.6749 38 1 4.8013 -3.7309 -0.5133 39 1 7.2893 -3.9239 -0.3151 40 1 8.2737 -3.8852 -1.8417 41 1 8.5202 -6.1314 -2.5830 42 1 9.2611 -8.6568 -2.0024 43 1 8.6131 -8.6003 -3.6593 44 1 9.8533 -14.4704 -3.4014 45 1 6.6719 -4.5980 -3.8923 46 1 5.0160 -4.9356 -3.2254 47 1 2.6868 -0.0944 -1.8324 48 1 1.2231 -1.1188 -1.8327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578446920.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -102.732768 kcal Electronic energy + Delta-G solvation = -26282.796564 eV Core-core repulsion = 22462.299255 eV Total energy + Delta-G solvation = -3820.497309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66973 -40.75878 -39.43557 -38.27420 -35.25424 -34.67174 -33.70875 -32.13146 -30.69998 -29.79958 -27.86710 -26.75418 -26.55511 -25.13169 -23.11319 -21.92687 -21.25522 -20.71759 -20.26536 -19.79673 -18.55422 -17.89740 -17.60145 -17.09887 -16.94641 -16.50464 -16.36590 -16.04000 -15.80196 -15.53039 -15.02718 -14.92327 -14.78698 -14.46736 -14.33717 -14.05531 -13.92309 -13.51402 -13.38967 -13.34550 -13.22322 -13.01293 -12.98852 -12.68733 -12.62005 -12.08937 -11.92485 -11.87588 -11.70823 -11.64632 -11.60574 -11.55838 -11.31404 -11.17155 -10.97699 -10.79682 -10.53516 -10.17816 -9.97561 -8.99212 -8.51624 -6.22305 0.99784 1.31468 1.46822 1.54642 1.56758 1.59185 2.12770 2.23648 2.28814 2.72448 2.86796 3.39276 3.50232 3.52502 3.60589 3.78434 3.86261 3.90185 4.03305 4.13330 4.25338 4.34735 4.41546 4.48045 4.52844 4.57037 4.58324 4.70925 4.72195 4.73744 4.79590 4.87896 4.95954 4.99214 4.99831 5.04086 5.11827 5.15281 5.30466 5.33798 5.37880 5.45171 5.56415 5.63063 5.70576 6.11371 6.48534 6.52259 6.93695 7.21269 7.22132 8.60744 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.001721 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.912912 B =16267.385953 C =16958.821579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.112 4.112 7 H 0.116 0.884 8 C 0.521 3.479 9 O -0.582 6.582 10 N -0.703 5.703 11 C 0.124 3.876 12 H 0.100 0.900 13 C -0.128 4.128 14 C 0.118 3.882 15 H 0.100 0.900 16 N -0.701 5.701 17 C 0.536 3.464 18 O -0.563 6.563 19 C -0.113 4.113 20 S -0.176 6.176 21 C -0.530 4.530 22 H 0.062 0.938 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.236 1.236 29 C -0.164 4.164 30 C -0.110 4.110 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.414 0.586 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.418 0.582 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.277 0.723 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.987 30.073 9.936 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.146 4.146 6 C -0.134 4.134 7 H 0.134 0.866 8 C 0.309 3.691 9 O -0.462 6.462 10 N -0.354 5.354 11 C 0.017 3.983 12 H 0.118 0.882 13 C -0.166 4.166 14 C 0.013 3.987 15 H 0.118 0.882 16 N -0.353 5.353 17 C 0.322 3.678 18 O -0.441 6.441 19 C -0.264 4.264 20 S 0.050 5.950 21 C -0.678 4.678 22 H 0.080 0.920 23 C -0.160 4.160 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.188 1.188 27 H -0.183 1.183 28 H -0.160 1.160 29 C -0.204 4.204 30 C -0.148 4.148 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.256 0.744 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.540 29.839 9.906 34.639 hybrid contribution 1.395 -0.682 -0.779 1.738 sum -13.145 29.156 9.127 33.259 Atomic orbital electron populations 1.21884 0.94291 1.02115 1.01854 1.21757 0.96283 0.99297 0.94231 0.91316 1.22450 0.96759 0.99238 0.96922 1.22490 0.98496 1.01113 0.92531 1.22235 0.93702 1.01513 0.95913 0.86611 1.21068 0.84470 0.78923 0.84641 1.90672 1.76157 1.48173 1.31148 1.45683 1.24493 1.33778 1.31478 1.21606 0.86185 0.97618 0.92855 0.88158 1.23670 0.98791 0.91444 1.02741 1.22685 0.92016 0.86836 0.97201 0.88169 1.45728 1.19605 1.03851 1.66163 1.19977 0.87050 0.83947 0.76838 1.90679 1.25206 1.81249 1.46985 1.23297 1.01761 0.94904 1.06437 1.84695 1.24698 0.99461 1.86145 1.22475 1.01394 0.94511 1.49371 0.91977 1.25566 0.99629 0.96980 0.93796 1.70020 1.32643 1.06800 1.46022 0.85866 0.79921 0.79742 0.80831 1.18821 1.18339 1.15972 1.23975 1.01632 0.96012 0.98821 1.22153 0.98729 0.95951 0.97929 0.92274 0.91928 0.93038 0.90560 0.90236 0.88880 0.91641 0.74921 0.88489 0.85989 0.74392 0.86663 0.87005 0.91390 0.87984 0.92551 0.92291 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.85 71.98 0.64 -0.65 16 2 C -0.10 -1.01 3.50 -10.07 -0.04 -1.05 16 3 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 4 C -0.12 -0.89 6.36 31.67 0.20 -0.69 16 5 C -0.11 -0.91 6.31 31.89 0.20 -0.71 16 6 C -0.11 -1.38 3.25 -10.46 -0.03 -1.42 16 7 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 8 C 0.52 9.31 7.13 87.66 0.62 9.94 16 9 O -0.58 -15.43 15.02 -3.05 -0.05 -15.48 16 10 N -0.70 -9.55 5.25 -440.05 -2.31 -11.86 16 11 C 0.12 1.77 4.32 45.52 0.20 1.96 16 12 H 0.10 1.68 7.47 -2.39 -0.02 1.66 16 13 C -0.13 -1.30 7.58 31.12 0.24 -1.06 16 14 C 0.12 2.05 4.12 45.52 0.19 2.23 16 15 H 0.10 2.09 7.46 -2.39 -0.02 2.08 16 16 N -0.70 -14.43 5.35 -440.05 -2.36 -16.79 16 17 C 0.54 17.24 7.85 87.66 0.69 17.93 16 18 O -0.56 -22.85 15.46 -3.02 -0.05 -22.89 16 19 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 20 S -0.18 -8.76 18.55 -56.49 -1.05 -9.81 16 21 C -0.53 -30.57 10.04 67.95 0.68 -29.89 16 22 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 23 C 0.05 2.66 5.50 84.86 0.47 3.13 16 24 N -0.92 -55.53 13.97 21.65 0.30 -55.22 16 25 Si 0.91 44.64 27.73 68.60 1.90 46.55 16 26 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 29 C -0.16 -2.86 7.68 31.12 0.24 -2.62 16 30 C -0.11 -1.58 5.84 31.32 0.18 -1.39 16 31 H 0.06 0.50 8.12 -2.38 -0.02 0.48 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.50 7.83 -2.39 -0.02 0.48 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.66 8.05 -2.38 -0.02 0.64 16 38 H 0.41 3.77 8.70 -92.71 -0.81 2.97 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 0.81 8.12 -2.39 -0.02 0.79 16 41 H 0.42 5.83 8.73 -92.70 -0.81 5.03 16 42 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 44 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.15 6.85 -2.39 -0.02 1.13 16 48 H 0.07 0.95 7.67 -2.39 -0.02 0.94 16 Total: -1.00 -78.50 401.68 0.62 -77.87 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -0.69 Total: 15.54 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.91 Total: -7.91 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -4.36 Total: -83.87 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.09 Total: -38.37 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.55 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.81 kcal Total: -78.50 0.62 -77.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578446920.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.859 kcal (2) G-P(sol) polarization free energy of solvation -78.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds