Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 110.53367 * 2 1 4 4 C 1.54890 * 110.48546 * 237.38909 * 2 1 3 5 5 C 1.54887 * 102.91108 * 203.47179 * 4 2 1 6 6 C 1.54265 * 104.20056 * 37.84875 * 5 4 2 7 7 H 1.08995 * 110.03137 * 95.67051 * 6 5 4 8 8 C 1.50700 * 110.03472 * 217.05621 * 6 5 4 9 9 O 1.21279 * 119.99680 * 118.54229 * 8 6 5 10 10 N 1.34777 * 120.00040 * 298.54986 * 8 6 5 11 11 C 1.46495 * 119.99992 * 180.02562 * 10 8 6 12 12 H 1.09006 * 112.85124 * 336.19516 * 11 10 8 13 13 C 1.53783 * 113.61592 * 107.49599 * 11 10 8 14 14 C 1.53779 * 87.07746 * 89.11745 * 13 11 10 15 15 H 1.08999 * 113.68912 * 270.87162 * 14 13 11 16 16 N 1.46504 * 113.61335 * 139.98572 * 14 13 11 17 17 C 1.34776 * 120.00446 * 107.50162 * 16 14 13 18 18 O 1.21286 * 119.99518 * 359.97438 * 17 16 14 19 19 C 1.50698 * 120.00223 * 179.97438 * 17 16 14 20 20 S 1.80998 * 109.47048 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99760 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00395 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00122 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99763 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00150 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47050 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47064 * 119.99860 * 25 23 21 28 28 H 1.48500 * 109.47110 * 239.99697 * 25 23 21 29 29 C 1.53771 * 87.08368 * 25.43348 * 14 13 11 30 30 C 1.53877 * 106.59605 * 336.39127 * 6 5 4 31 31 H 1.09001 * 109.46956 * 181.15901 * 1 2 3 32 32 H 1.09001 * 109.47023 * 301.15969 * 1 2 3 33 33 H 1.08999 * 109.47072 * 61.16016 * 1 2 3 34 34 H 1.09002 * 110.75897 * 85.06297 * 4 2 1 35 35 H 1.09006 * 110.75292 * 321.87527 * 4 2 1 36 36 H 1.09004 * 110.48468 * 156.53190 * 5 4 2 37 37 H 1.09006 * 110.48476 * 279.16949 * 5 4 2 38 38 H 0.96998 * 119.99681 * 359.97438 * 10 8 6 39 39 H 1.08999 * 113.61235 * 203.66377 * 13 11 10 40 40 H 1.08998 * 113.61243 * 334.57191 * 13 11 10 41 41 H 0.97007 * 119.99319 * 287.49929 * 16 14 13 42 42 H 1.08998 * 109.47159 * 299.99976 * 19 17 16 43 43 H 1.09008 * 109.46852 * 59.99652 * 19 17 16 44 44 H 0.97002 * 120.00223 * 179.97438 * 24 23 21 45 45 H 1.09002 * 113.61588 * 220.01944 * 29 14 13 46 46 H 1.09004 * 113.61695 * 89.11543 * 29 14 13 47 47 H 1.08999 * 110.03493 * 119.28247 * 30 6 5 48 48 H 1.08997 * 110.03317 * 240.71381 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0722 -0.7820 -1.2222 5 6 3.4905 -1.2020 -0.7630 6 6 3.3186 -1.5443 0.7313 7 1 3.1684 -2.6169 0.8538 8 6 4.5334 -1.1018 1.5055 9 8 4.4238 -0.2729 2.3839 10 7 5.7417 -1.6271 1.2215 11 6 6.9226 -1.1974 1.9744 12 1 6.8050 -0.2086 2.4181 13 6 7.4456 -2.2576 2.9579 14 6 8.3100 -2.7893 1.8025 15 1 7.8119 -3.5445 1.1945 16 7 9.6582 -3.1885 2.2137 17 6 9.9859 -4.4945 2.2725 18 8 9.1644 -5.3393 1.9853 19 6 11.3730 -4.9051 2.6950 20 16 11.5002 -6.7105 2.6745 21 6 13.1728 -6.9051 3.1932 22 1 13.7751 -6.0357 3.4119 23 6 13.7165 -8.1759 3.3209 24 7 12.9823 -9.2355 3.0549 25 14 15.4895 -8.3823 3.8715 26 1 16.0936 -7.0462 4.1064 27 1 15.5287 -9.1718 5.1286 28 1 16.2559 -9.0930 2.8166 29 6 8.2420 -1.3742 1.2046 30 6 2.0751 -0.7792 1.2172 31 1 -0.3633 -1.0275 0.0208 32 1 -0.3633 0.5317 0.8794 33 1 -0.3633 0.4957 -0.9002 34 1 2.1252 -0.1382 -2.1002 35 1 1.4562 -1.6583 -1.4242 36 1 3.8278 -2.0771 -1.3185 37 1 4.1917 -0.3767 -0.8871 38 1 5.8292 -2.2903 0.5190 39 1 8.0257 -1.8409 3.7812 40 1 6.6811 -2.9598 3.2902 41 1 10.3151 -2.5128 2.4437 42 1 12.1032 -4.4812 2.0057 43 1 11.5692 -4.5387 3.7027 44 1 13.3623 -10.1236 3.1437 45 1 8.1203 -1.3632 0.1214 46 1 9.0398 -0.7160 1.5486 47 1 1.3215 -1.4805 1.5755 48 1 2.3499 -0.0871 2.0131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578446921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = -78.263254 kcal Electronic energy + Delta-G solvation = -26238.613975 eV Core-core repulsion = 22419.177743 eV Total energy + Delta-G solvation = -3819.436232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.89115 -39.75061 -38.38243 -37.44733 -34.23191 -32.75025 -32.44521 -31.55971 -29.33590 -29.09304 -26.02165 -25.97043 -25.51544 -24.26508 -22.40118 -20.79497 -20.51849 -19.85229 -19.71007 -17.84235 -17.80625 -16.68404 -16.34942 -16.14614 -15.74460 -15.41684 -15.00331 -14.82197 -14.77316 -14.29240 -14.09649 -14.00660 -13.81490 -13.36867 -13.22852 -12.91395 -12.79974 -12.72646 -12.39368 -12.21962 -12.10210 -11.94486 -11.64925 -11.25831 -11.20053 -11.09234 -11.05503 -11.04000 -11.00586 -10.86490 -10.82436 -10.71658 -10.02788 -9.82081 -9.44769 -9.35105 -9.09448 -8.88340 -8.25561 -6.52095 -6.23688 -3.94249 2.33296 2.79465 3.01731 3.02512 3.20265 3.27182 3.31868 3.70414 4.04928 4.08927 4.14552 4.18636 4.28767 4.32257 4.64337 4.68671 4.78374 4.83251 4.93546 5.03381 5.09133 5.11781 5.12112 5.17363 5.20426 5.31670 5.38102 5.39700 5.45789 5.50024 5.55877 5.58813 5.61233 5.66530 5.74738 5.77649 5.80628 5.86104 5.88451 5.98562 6.04627 6.11531 6.27972 6.61644 7.17759 7.58132 7.67278 7.92665 8.33596 8.57014 9.21929 10.83826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.001597 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.549100 B =17531.001783 C =17907.721485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.115 4.115 7 H 0.101 0.899 8 C 0.523 3.477 9 O -0.538 6.538 10 N -0.712 5.712 11 C 0.122 3.878 12 H 0.107 0.893 13 C -0.164 4.164 14 C 0.127 3.873 15 H 0.113 0.887 16 N -0.728 5.728 17 C 0.533 3.467 18 O -0.518 6.518 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 C -0.153 4.153 30 C -0.115 4.115 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.069 0.931 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.853 21.125 -7.891 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.154 4.154 6 C -0.136 4.136 7 H 0.119 0.881 8 C 0.310 3.690 9 O -0.414 6.414 10 N -0.363 5.363 11 C 0.016 3.984 12 H 0.125 0.875 13 C -0.204 4.204 14 C 0.021 3.979 15 H 0.131 0.869 16 N -0.381 5.381 17 C 0.319 3.681 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.192 4.192 30 C -0.153 4.153 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.234 0.766 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.118 0.882 47 H 0.087 0.913 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.306 20.100 -7.741 30.297 hybrid contribution 2.584 0.696 0.517 2.726 sum -18.722 20.795 -7.224 28.899 Atomic orbital electron populations 1.21794 0.94829 1.01850 1.01664 1.22013 0.95567 0.99447 0.94585 0.90768 1.22576 0.95417 1.00054 0.97659 1.22359 0.98256 1.01803 0.92951 1.21965 0.93551 1.02230 0.95845 0.88128 1.20634 0.84407 0.80776 0.83194 1.90670 1.85445 1.33051 1.32278 1.45707 1.06913 1.44687 1.38985 1.21673 0.84091 0.99256 0.93392 0.87482 1.23961 0.99845 0.98590 0.98038 1.22474 0.83927 0.95249 0.96266 0.86907 1.45980 1.13563 1.07683 1.70912 1.20366 0.89610 0.81838 0.76256 1.90693 1.51174 1.50253 1.47104 1.23543 0.95414 1.07458 1.04095 1.85391 1.16776 0.92398 1.88869 1.22912 0.97374 0.95299 1.52783 0.90870 1.24994 0.98830 0.94843 0.94907 1.70026 1.36288 0.98226 1.45746 0.86115 0.82650 0.78338 0.78379 1.19612 1.20551 1.20560 1.23746 0.97226 0.97145 1.01050 1.22282 0.94787 0.99403 0.98779 0.92552 0.92617 0.92696 0.91349 0.91058 0.90662 0.91110 0.76230 0.88736 0.90565 0.76647 0.89196 0.89200 0.92225 0.90170 0.88188 0.91266 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.13 37.16 0.34 -0.42 16 2 C -0.10 -0.61 3.47 -88.85 -0.31 -0.91 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.63 6.32 -24.74 -0.16 -0.78 16 5 C -0.12 -0.63 6.27 -25.07 -0.16 -0.79 16 6 C -0.11 -0.80 3.30 -90.65 -0.30 -1.10 16 7 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 8 C 0.52 5.01 7.01 -10.99 -0.08 4.93 16 9 O -0.54 -7.15 14.81 5.56 0.08 -7.06 16 10 N -0.71 -5.67 5.19 -53.02 -0.28 -5.94 16 11 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 12 H 0.11 1.01 7.46 -51.93 -0.39 0.62 16 13 C -0.16 -1.64 7.68 -25.92 -0.20 -1.84 16 14 C 0.13 1.33 4.12 -67.12 -0.28 1.06 16 15 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 16 N -0.73 -9.03 5.35 -53.02 -0.28 -9.32 16 17 C 0.53 9.59 7.85 -10.99 -0.09 9.50 16 18 O -0.52 -11.40 15.46 5.55 0.09 -11.32 16 19 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 25 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 C -0.15 -1.11 7.58 -25.93 -0.20 -1.31 16 30 C -0.11 -0.86 5.99 -25.51 -0.15 -1.01 16 31 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.34 8.06 -51.93 -0.42 -0.07 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 38 H 0.40 2.47 8.67 -40.82 -0.35 2.12 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.40 3.77 8.73 -40.82 -0.36 3.41 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.60 8.12 -51.93 -0.42 0.18 16 47 H 0.07 0.47 7.81 -51.93 -0.41 0.06 16 48 H 0.09 0.87 6.40 -51.93 -0.33 0.54 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -35.77 404.01 -10.33 -46.10 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.09 Total: 1.97 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.44 Total: -7.64 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.17 Total: -40.56 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.77 -10.33 -46.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578446921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.160 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds