Wall clock time and date at job start Sat Apr 11 2020 06:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54762 * 2 1 4 4 C 1.53001 * 117.50064 * 214.29337 * 2 1 3 5 5 C 1.52994 * 117.50137 * 145.67140 * 2 1 3 6 6 H 1.09001 * 117.49790 * 359.97417 * 5 2 1 7 7 C 1.50703 * 117.49849 * 214.97889 * 5 2 1 8 8 O 1.21282 * 120.00489 * 0.02562 * 7 5 2 9 9 N 1.34784 * 119.99807 * 179.97438 * 7 5 2 10 10 C 1.46928 * 120.63146 * 359.97438 * 9 7 5 11 11 C 1.53185 * 108.77689 * 233.58625 * 10 9 7 12 12 C 1.53045 * 109.31293 * 305.36670 * 11 10 9 13 13 C 1.53041 * 109.53880 * 61.36618 * 12 11 10 14 14 H 1.09006 * 109.49764 * 58.58352 * 13 12 11 15 15 N 1.46491 * 109.49851 * 178.65017 * 13 12 11 16 16 C 1.46503 * 120.00086 * 60.00089 * 15 13 12 17 17 C 1.34778 * 120.00318 * 240.00088 * 15 13 12 18 18 O 1.21286 * 119.99686 * 359.97438 * 17 15 13 19 19 C 1.50700 * 120.00376 * 180.02562 * 17 15 13 20 20 S 1.81000 * 109.47066 * 180.02562 * 19 17 15 21 21 C 1.76200 * 99.99981 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99648 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00389 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99642 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00364 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47039 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46962 * 120.00234 * 25 23 21 28 28 H 1.48503 * 109.46629 * 239.99776 * 25 23 21 29 29 C 1.46925 * 120.62770 * 179.72142 * 9 7 5 30 30 H 1.09002 * 109.47153 * 274.32865 * 1 2 3 31 31 H 1.09001 * 109.46832 * 154.33056 * 1 2 3 32 32 H 1.09004 * 109.47261 * 34.33037 * 1 2 3 33 33 H 1.08997 * 117.49845 * 359.97438 * 4 2 1 34 34 H 1.08999 * 117.50024 * 145.02000 * 4 2 1 35 35 H 1.08994 * 109.58464 * 353.37792 * 10 9 7 36 36 H 1.08997 * 109.58114 * 113.79754 * 10 9 7 37 37 H 1.09001 * 109.49913 * 65.31642 * 11 10 9 38 38 H 1.08999 * 109.49556 * 185.41481 * 11 10 9 39 39 H 1.09000 * 109.45955 * 181.38781 * 12 11 10 40 40 H 1.08993 * 109.45752 * 301.35705 * 12 11 10 41 41 H 1.08999 * 109.47052 * 90.00046 * 16 15 13 42 42 H 1.09001 * 109.46647 * 209.99954 * 16 15 13 43 43 H 1.08996 * 109.46597 * 329.99660 * 16 15 13 44 44 H 1.09005 * 109.46865 * 299.99749 * 19 17 15 45 45 H 1.08991 * 109.47304 * 59.99848 * 19 17 15 46 46 H 0.97002 * 120.00162 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.58885 * 246.19972 * 29 9 7 48 48 H 1.09006 * 109.58745 * 6.62638 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 1 1.6112 -1.8578 1.2692 7 6 3.5293 -0.7805 1.4610 8 8 3.9716 0.3472 1.4015 9 7 4.1936 -1.7294 2.1503 10 6 3.6696 -3.0996 2.2329 11 6 3.5755 -3.5033 3.7076 12 6 4.9402 -3.3110 4.3731 13 6 5.3415 -1.8360 4.3009 14 1 4.5845 -1.2282 4.7967 15 7 6.6328 -1.6475 4.9665 16 6 7.8176 -2.3603 4.4822 17 6 6.7310 -0.8183 6.0245 18 8 5.7503 -0.2278 6.4252 19 6 8.0595 -0.6239 6.7088 20 16 7.8661 0.5386 8.0826 21 6 9.5213 0.5779 8.6855 22 1 10.2849 -0.0167 8.2060 23 6 9.8439 1.3730 9.7765 24 7 8.9133 2.0981 10.3605 25 14 11.5988 1.4152 10.4152 26 1 12.4474 0.5181 9.5904 27 1 12.1213 2.8030 10.3355 28 1 11.6225 0.9577 11.8277 29 6 5.4582 -1.4145 2.8286 30 1 -0.3633 0.0776 1.0247 31 1 -0.3633 -0.9263 -0.4452 32 1 -0.3634 0.8487 -0.5796 33 1 1.6113 -1.8591 -1.2673 34 1 3.1715 -0.8755 -1.2680 35 1 2.6795 -3.1401 1.7790 36 1 4.3417 -3.7799 1.7099 37 1 2.8351 -2.8799 4.2090 38 1 3.2796 -4.5499 3.7800 39 1 4.8822 -3.6210 5.4165 40 1 5.6849 -3.9156 3.8556 41 1 8.3232 -1.7552 3.7296 42 1 8.4957 -2.5456 5.3151 43 1 7.5151 -3.3102 4.0415 44 1 8.4150 -1.5810 7.0906 45 1 8.7812 -0.2267 5.9951 46 1 9.1386 2.6534 11.1232 47 1 6.2735 -1.9600 2.3534 48 1 5.6485 -0.3429 2.7679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580255281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:20 Heat of formation + Delta-G solvation = -44.862302 kcal Electronic energy + Delta-G solvation = -27396.954254 eV Core-core repulsion = 23578.966397 eV Total energy + Delta-G solvation = -3817.987858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.81386 -39.62019 -37.95383 -36.77711 -35.23888 -32.73769 -32.41959 -31.21132 -29.25221 -28.50258 -26.86915 -26.16041 -25.48780 -23.98780 -23.10892 -21.38391 -20.68395 -19.24447 -19.03525 -17.75554 -17.64387 -16.75504 -16.32416 -16.05882 -15.49456 -15.16753 -14.79872 -14.79041 -14.60453 -14.34943 -14.01800 -13.98947 -13.60110 -13.26733 -13.22838 -13.09054 -12.99778 -12.87283 -12.54195 -12.41606 -12.32232 -11.98304 -11.80569 -11.65319 -11.37929 -11.17489 -11.06662 -11.01309 -10.89504 -10.75025 -10.72986 -10.39332 -10.00138 -9.79002 -9.37175 -9.08253 -9.06264 -8.46500 -8.21046 -6.49170 -6.20798 -3.91358 2.22627 2.51258 2.99057 3.05053 3.22097 3.26868 3.31736 3.44200 3.61050 4.06923 4.20771 4.33128 4.37632 4.46326 4.51189 4.55803 4.68591 4.75061 4.95100 4.95955 5.00907 5.06687 5.11937 5.14312 5.21645 5.23198 5.30934 5.35832 5.39996 5.43513 5.48353 5.52433 5.56579 5.65450 5.69866 5.70632 5.74245 5.88247 5.95082 5.96166 6.05433 6.12875 6.14243 6.64651 7.10292 7.49943 7.60665 7.94990 8.36174 8.54051 9.24466 10.86683 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002153 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.923690 B =12999.141392 C =13576.682612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.118 0.882 4 C -0.148 4.148 5 C -0.192 4.192 6 H 0.125 0.875 7 C 0.544 3.456 8 O -0.535 6.535 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.134 4.134 12 C -0.129 4.129 13 C 0.129 3.871 14 H 0.106 0.894 15 N -0.619 5.619 16 C 0.077 3.923 17 C 0.535 3.465 18 O -0.513 6.513 19 C -0.149 4.149 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 C 0.105 3.895 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.070 0.930 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 -15.685 -22.758 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.143 0.857 7 C 0.333 3.667 8 O -0.411 6.411 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.168 4.168 13 C 0.024 3.976 14 H 0.124 0.876 15 N -0.355 5.355 16 C -0.067 4.067 17 C 0.323 3.677 18 O -0.387 6.387 19 C -0.299 4.299 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 C -0.018 4.018 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.206 -14.061 -22.037 29.752 hybrid contribution 2.447 -0.908 0.071 2.610 sum -11.760 -14.969 -21.967 29.067 Atomic orbital electron populations 1.21406 0.92101 1.02208 1.02373 1.22406 0.95331 0.95184 1.01119 0.86415 1.23100 1.03176 1.01681 0.90595 1.22326 0.97758 1.05505 0.95730 0.85696 1.19701 0.84561 0.84238 0.78222 1.90725 1.68387 1.20721 1.61279 1.47948 1.23849 1.10445 1.51829 1.21833 1.00149 0.82469 0.97205 1.21920 0.97933 1.02275 0.95106 1.21901 0.96823 0.96091 1.01954 1.21351 0.87091 0.96860 0.92251 0.87626 1.47818 1.09008 1.46570 1.32104 1.21786 0.87784 0.96520 1.00575 1.20401 0.90815 0.77595 0.78931 1.90700 1.38737 1.46036 1.63231 1.23549 0.96461 1.05939 1.03973 1.85435 1.14574 1.53440 1.30095 1.22894 0.94672 1.32101 1.18545 0.90884 1.25003 0.98433 0.94600 0.95626 1.70034 1.32817 1.26126 1.21271 0.86111 0.82631 0.78077 0.78638 1.19618 1.20557 1.20584 1.22003 0.84932 1.03410 0.91466 0.91807 0.92376 0.91577 0.87750 0.88304 0.89308 0.91084 0.90958 0.90076 0.90772 0.91356 0.92657 0.90423 0.91292 0.89194 0.89173 0.92240 0.91212 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.19 37.16 0.38 -0.35 16 2 C -0.12 -0.99 5.92 -90.62 -0.54 -1.52 16 3 H 0.12 1.20 7.67 -51.93 -0.40 0.80 16 4 C -0.15 -0.98 9.88 -26.73 -0.26 -1.24 16 5 C -0.19 -1.57 4.85 -91.78 -0.44 -2.02 16 6 H 0.13 0.75 6.56 -51.93 -0.34 0.41 16 7 C 0.54 6.53 7.48 -10.98 -0.08 6.44 16 8 O -0.53 -8.79 15.67 5.56 0.09 -8.70 16 9 N -0.61 -6.19 2.97 -172.53 -0.51 -6.70 16 10 C 0.11 0.68 6.34 -3.71 -0.02 0.65 16 11 C -0.13 -0.92 6.08 -26.61 -0.16 -1.08 16 12 C -0.13 -1.17 5.12 -26.69 -0.14 -1.30 16 13 C 0.13 1.63 2.69 -67.61 -0.18 1.45 16 14 H 0.11 1.70 6.90 -51.93 -0.36 1.34 16 15 N -0.62 -8.77 2.77 -173.56 -0.48 -9.25 16 16 C 0.08 0.78 9.21 59.85 0.55 1.33 16 17 C 0.53 10.37 7.69 -10.99 -0.08 10.29 16 18 O -0.51 -12.08 15.19 5.55 0.08 -11.99 16 19 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16 20 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 21 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 25 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 29 C 0.11 1.24 5.81 -3.51 -0.02 1.22 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.41 5.51 -51.93 -0.29 0.12 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.51 6.72 -51.93 -0.35 0.16 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 43 H 0.07 0.52 6.45 -51.93 -0.34 0.18 16 44 H 0.09 1.69 7.40 -51.91 -0.38 1.30 16 45 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.07 0.69 7.53 -51.93 -0.39 0.29 16 48 H 0.10 1.46 7.00 -51.93 -0.36 1.10 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -37.11 395.71 -9.71 -46.83 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.72 Total: -1.00 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.64 Total: -2.07 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.26 Total: -41.64 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.11 -9.71 -46.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580255281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.964 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds