Wall clock time and date at job start Sat Apr 11 2020 06:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.54762 * 2 1 4 4 C 1.53001 * 117.50064 * 214.29337 * 2 1 3 5 5 C 1.52994 * 117.50137 * 145.67140 * 2 1 3 6 6 H 1.09001 * 117.49790 * 359.97417 * 5 2 1 7 7 C 1.50703 * 117.49849 * 214.97889 * 5 2 1 8 8 O 1.21282 * 120.00489 * 0.02562 * 7 5 2 9 9 N 1.34784 * 119.99807 * 179.97438 * 7 5 2 10 10 C 1.46928 * 120.63146 * 359.97438 * 9 7 5 11 11 C 1.53185 * 108.77689 * 233.58625 * 10 9 7 12 12 C 1.53045 * 109.31293 * 305.36670 * 11 10 9 13 13 C 1.53041 * 109.53880 * 61.36618 * 12 11 10 14 14 H 1.09006 * 109.49764 * 58.58352 * 13 12 11 15 15 N 1.46491 * 109.49851 * 178.65017 * 13 12 11 16 16 C 1.46503 * 120.00086 * 60.00089 * 15 13 12 17 17 C 1.34778 * 120.00318 * 240.00088 * 15 13 12 18 18 O 1.21286 * 119.99686 * 359.97438 * 17 15 13 19 19 C 1.50700 * 120.00376 * 180.02562 * 17 15 13 20 20 S 1.81000 * 109.47066 * 180.02562 * 19 17 15 21 21 C 1.76200 * 99.99981 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99648 * 359.97438 * 21 20 19 23 23 C 1.38794 * 120.00389 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99642 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00364 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47039 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46962 * 120.00234 * 25 23 21 28 28 H 1.48503 * 109.46629 * 239.99776 * 25 23 21 29 29 C 1.46925 * 120.62770 * 179.72142 * 9 7 5 30 30 H 1.09002 * 109.47153 * 274.32865 * 1 2 3 31 31 H 1.09001 * 109.46832 * 154.33056 * 1 2 3 32 32 H 1.09004 * 109.47261 * 34.33037 * 1 2 3 33 33 H 1.08997 * 117.49845 * 359.97438 * 4 2 1 34 34 H 1.08999 * 117.50024 * 145.02000 * 4 2 1 35 35 H 1.08994 * 109.58464 * 353.37792 * 10 9 7 36 36 H 1.08997 * 109.58114 * 113.79754 * 10 9 7 37 37 H 1.09001 * 109.49913 * 65.31642 * 11 10 9 38 38 H 1.08999 * 109.49556 * 185.41481 * 11 10 9 39 39 H 1.09000 * 109.45955 * 181.38781 * 12 11 10 40 40 H 1.08993 * 109.45752 * 301.35705 * 12 11 10 41 41 H 1.08999 * 109.47052 * 90.00046 * 16 15 13 42 42 H 1.09001 * 109.46647 * 209.99954 * 16 15 13 43 43 H 1.08996 * 109.46597 * 329.99660 * 16 15 13 44 44 H 1.09005 * 109.46865 * 299.99749 * 19 17 15 45 45 H 1.08991 * 109.47304 * 59.99848 * 19 17 15 46 46 H 0.97002 * 120.00162 * 179.97438 * 24 23 21 47 47 H 1.08998 * 109.58885 * 246.19972 * 29 9 7 48 48 H 1.09006 * 109.58745 * 6.62638 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2365 -1.1207 0.7653 6 1 1.6112 -1.8578 1.2692 7 6 3.5293 -0.7805 1.4610 8 8 3.9716 0.3472 1.4015 9 7 4.1936 -1.7294 2.1503 10 6 3.6696 -3.0996 2.2329 11 6 3.5755 -3.5033 3.7076 12 6 4.9402 -3.3110 4.3731 13 6 5.3415 -1.8360 4.3009 14 1 4.5845 -1.2282 4.7967 15 7 6.6328 -1.6475 4.9665 16 6 7.8176 -2.3603 4.4822 17 6 6.7310 -0.8183 6.0245 18 8 5.7503 -0.2278 6.4252 19 6 8.0595 -0.6239 6.7088 20 16 7.8661 0.5386 8.0826 21 6 9.5213 0.5779 8.6855 22 1 10.2849 -0.0167 8.2060 23 6 9.8439 1.3730 9.7765 24 7 8.9133 2.0981 10.3605 25 14 11.5988 1.4152 10.4152 26 1 12.4474 0.5181 9.5904 27 1 12.1213 2.8030 10.3355 28 1 11.6225 0.9577 11.8277 29 6 5.4582 -1.4145 2.8286 30 1 -0.3633 0.0776 1.0247 31 1 -0.3633 -0.9263 -0.4452 32 1 -0.3634 0.8487 -0.5796 33 1 1.6113 -1.8591 -1.2673 34 1 3.1715 -0.8755 -1.2680 35 1 2.6795 -3.1401 1.7790 36 1 4.3417 -3.7799 1.7099 37 1 2.8351 -2.8799 4.2090 38 1 3.2796 -4.5499 3.7800 39 1 4.8822 -3.6210 5.4165 40 1 5.6849 -3.9156 3.8556 41 1 8.3232 -1.7552 3.7296 42 1 8.4957 -2.5456 5.3151 43 1 7.5151 -3.3102 4.0415 44 1 8.4150 -1.5810 7.0906 45 1 8.7812 -0.2267 5.9951 46 1 9.1386 2.6534 11.1232 47 1 6.2735 -1.9600 2.3534 48 1 5.6485 -0.3429 2.7679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580255281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:19 Heat of formation + Delta-G solvation = -69.539208 kcal Electronic energy + Delta-G solvation = -27398.024325 eV Core-core repulsion = 23578.966397 eV Total energy + Delta-G solvation = -3819.057929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.74577 -40.85000 -38.90812 -37.60876 -36.43471 -34.60749 -33.62080 -32.23800 -30.24871 -29.47621 -27.87099 -27.68768 -26.92364 -24.78579 -23.89973 -22.12077 -21.50723 -20.48228 -19.93811 -19.54919 -18.57413 -18.11739 -17.27678 -17.20935 -16.90332 -16.75429 -16.22353 -15.89261 -15.50271 -15.44865 -15.04717 -14.86638 -14.55636 -14.51500 -14.27244 -14.09154 -14.00616 -13.76126 -13.59634 -13.53748 -13.22904 -13.16033 -12.94073 -12.92680 -12.61732 -12.49532 -12.35658 -12.05855 -11.97817 -11.77315 -11.70404 -11.35941 -11.17969 -11.03366 -10.94521 -10.82421 -10.29364 -10.05294 -9.53306 -8.71131 -8.36741 -6.15968 1.19419 1.35148 1.40293 1.43553 1.50248 1.55151 1.76933 2.18625 2.25288 2.81230 2.97406 3.22628 3.38906 3.53903 3.72189 3.74769 3.81939 3.85232 3.91355 3.98236 4.12123 4.15327 4.17597 4.27726 4.40698 4.42055 4.48058 4.53407 4.64248 4.68011 4.69142 4.78604 4.82563 4.86680 4.92369 4.94207 5.01642 5.06768 5.14747 5.21657 5.25859 5.35115 5.39703 5.40775 5.58318 6.17047 6.19008 6.31282 7.04129 7.05912 7.08571 8.72951 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002153 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.923690 B =12999.141392 C =13576.682612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 H 0.083 0.917 4 C -0.124 4.124 5 C -0.194 4.194 6 H 0.155 0.845 7 C 0.531 3.469 8 O -0.596 6.596 9 N -0.605 5.605 10 C 0.102 3.898 11 C -0.129 4.129 12 C -0.121 4.121 13 C 0.129 3.871 14 H 0.059 0.941 15 N -0.605 5.605 16 C 0.065 3.935 17 C 0.529 3.471 18 O -0.570 6.570 19 C -0.120 4.120 20 S -0.159 6.159 21 C -0.543 4.543 22 H 0.085 0.915 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.002 2.998 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.273 1.273 29 C 0.112 3.888 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.100 0.900 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.180 -19.961 -25.073 34.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.214 4.214 6 H 0.173 0.827 7 C 0.322 3.678 8 O -0.477 6.477 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.025 3.975 14 H 0.077 0.923 15 N -0.338 5.338 16 C -0.076 4.076 17 C 0.317 3.683 18 O -0.448 6.448 19 C -0.271 4.271 20 S 0.068 5.932 21 C -0.691 4.691 22 H 0.103 0.897 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.823 3.177 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.198 1.198 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.420 -18.428 -24.400 33.392 hybrid contribution 2.166 0.373 0.685 2.302 sum -11.254 -18.055 -23.715 31.860 Atomic orbital electron populations 1.21385 0.90159 1.03563 1.02347 1.22424 0.96781 0.94121 1.02593 0.89882 1.23202 1.02731 1.00973 0.89206 1.22383 0.95992 1.06244 0.96790 0.82725 1.20511 0.85599 0.83618 0.78099 1.90697 1.70090 1.23309 1.63617 1.48122 1.23042 1.11961 1.50536 1.22204 1.02146 0.80255 0.97248 1.21942 0.95888 1.04004 0.94934 1.21886 0.99112 0.92884 1.02080 1.21440 0.85088 0.99073 0.91914 0.92297 1.47819 1.11141 1.44760 1.30117 1.22173 0.86256 0.98036 1.01156 1.20277 0.89590 0.78209 0.80198 1.90681 1.40096 1.48662 1.65377 1.23352 0.97762 1.04648 1.01318 1.85672 1.16229 1.56952 1.34362 1.23217 0.94470 1.32430 1.18933 0.89717 1.26192 1.03648 0.93840 0.95731 1.70207 1.35612 1.27129 1.21971 0.84861 0.76189 0.78466 0.78142 1.17785 1.20038 1.19806 1.21802 0.86963 1.01150 0.91269 0.92345 0.89982 0.91434 0.84182 0.89471 0.86830 0.88141 0.92954 0.86549 0.92038 0.88203 0.91365 0.90134 0.87331 0.86839 0.87541 0.91999 0.88192 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.19 71.98 0.73 -0.49 16 2 C -0.14 -2.24 5.92 -10.80 -0.06 -2.30 16 3 H 0.08 1.90 7.67 -2.38 -0.02 1.88 16 4 C -0.12 -1.36 9.88 30.59 0.30 -1.05 16 5 C -0.19 -2.88 4.85 -11.54 -0.06 -2.94 16 6 H 0.16 1.32 6.56 -2.39 -0.02 1.31 16 7 C 0.53 12.98 7.48 87.66 0.66 13.63 16 8 O -0.60 -21.33 15.67 -3.04 -0.05 -21.38 16 9 N -0.60 -11.69 2.97 -818.14 -2.43 -14.12 16 10 C 0.10 0.90 6.34 86.36 0.55 1.45 16 11 C -0.13 -1.35 6.08 30.67 0.19 -1.17 16 12 C -0.12 -1.88 5.12 30.62 0.16 -1.72 16 13 C 0.13 3.26 2.69 45.20 0.12 3.38 16 14 H 0.06 2.06 6.90 -2.38 -0.02 2.04 16 15 N -0.60 -16.89 2.77 -821.41 -2.27 -19.16 16 16 C 0.07 1.13 9.21 127.77 1.18 2.31 16 17 C 0.53 21.28 7.69 87.66 0.67 21.95 16 18 O -0.57 -28.84 15.19 -3.05 -0.05 -28.89 16 19 C -0.12 -4.98 4.71 71.24 0.34 -4.64 16 20 S -0.16 -9.20 20.57 -56.49 -1.16 -10.36 16 21 C -0.54 -31.59 9.50 67.95 0.65 -30.94 16 22 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 23 C 0.01 0.60 5.49 84.86 0.47 1.07 16 24 N -0.91 -57.31 13.22 21.65 0.29 -57.02 16 25 Si 1.00 44.25 29.55 68.60 2.03 46.28 16 26 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 C 0.11 2.61 5.81 86.50 0.50 3.12 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.46 7.90 -2.39 -0.02 0.45 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.14 0.57 8.05 -2.39 -0.02 0.55 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 0.49 5.51 -2.39 -0.01 0.48 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.12 0.51 8.14 -2.39 -0.02 0.50 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 0.95 6.72 -2.39 -0.02 0.93 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.40 6.44 -2.39 -0.02 1.39 16 43 H 0.11 1.07 6.45 -2.39 -0.02 1.06 16 44 H 0.11 4.15 7.40 -2.39 -0.02 4.14 16 45 H 0.11 4.05 8.11 -2.40 -0.02 4.03 16 46 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 47 H 0.10 1.70 7.53 -2.39 -0.02 1.69 16 48 H 0.05 1.70 7.00 -2.38 -0.02 1.68 16 Total: -1.00 -91.03 395.71 3.69 -87.34 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.95 Total: 15.66 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 6.38 Total: 1.65 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -4.41 Total: -90.30 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.09 Total: -50.26 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.16 Total: -10.36 kcal Total: -91.03 3.69 -87.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580255281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.797 kcal (2) G-P(sol) polarization free energy of solvation -91.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds