Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55018 * 2 1 4 4 C 1.52998 * 117.50034 * 214.32434 * 2 1 3 5 5 C 1.53001 * 60.00347 * 252.51286 * 4 2 1 6 6 H 1.08996 * 117.50157 * 107.48798 * 5 4 2 7 7 C 1.50702 * 117.49877 * 252.51183 * 5 4 2 8 8 O 1.21284 * 120.00072 * 68.61582 * 7 5 4 9 9 N 1.34774 * 120.00107 * 248.61879 * 7 5 4 10 10 C 1.46500 * 119.99929 * 0.02562 * 9 7 5 11 11 C 1.46496 * 120.00079 * 179.97438 * 9 7 5 12 12 C 1.53005 * 109.46802 * 90.00289 * 11 9 7 13 13 H 1.08995 * 110.88757 * 305.69717 * 12 11 9 14 14 C 1.55155 * 111.00323 * 181.81920 * 12 11 9 15 15 C 1.54328 * 102.94291 * 206.42657 * 14 12 11 16 16 N 1.47017 * 107.27134 * 22.19146 * 15 14 12 17 17 C 1.34779 * 125.65004 * 181.10406 * 16 15 14 18 18 O 1.21281 * 119.99896 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99906 * 359.97150 * 17 16 15 20 20 S 1.80997 * 109.46982 * 180.02562 * 19 17 16 21 21 C 1.76203 * 99.99837 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00017 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00055 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99680 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99812 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47113 * 90.00018 * 25 23 21 27 27 H 1.48507 * 109.46809 * 210.00020 * 25 23 21 28 28 H 1.48501 * 109.47027 * 329.99867 * 25 23 21 29 29 C 1.47472 * 108.72383 * 1.02900 * 16 15 14 30 30 H 1.09002 * 109.47153 * 154.28028 * 1 2 3 31 31 H 1.09001 * 109.46832 * 34.28219 * 1 2 3 32 32 H 1.09004 * 109.47261 * 274.28200 * 1 2 3 33 33 H 1.08998 * 117.50041 * 0.02562 * 4 2 1 34 34 H 1.09004 * 117.49976 * 145.02046 * 4 2 1 35 35 H 1.09002 * 109.47499 * 89.99364 * 10 9 7 36 36 H 1.08993 * 109.47192 * 210.00236 * 10 9 7 37 37 H 1.09000 * 109.46920 * 329.99774 * 10 9 7 38 38 H 1.09002 * 109.47370 * 209.99899 * 11 9 7 39 39 H 1.08998 * 109.47307 * 330.00094 * 11 9 7 40 40 H 1.09007 * 110.72053 * 324.78610 * 14 12 11 41 41 H 1.08998 * 110.72383 * 88.06106 * 14 12 11 42 42 H 1.08998 * 109.88340 * 141.61027 * 15 14 12 43 43 H 1.09001 * 109.87894 * 262.61878 * 15 14 12 44 44 H 1.09002 * 109.46996 * 300.00833 * 19 17 16 45 45 H 1.09001 * 109.46656 * 59.99987 * 19 17 16 46 46 H 0.97001 * 119.99440 * 179.97438 * 24 23 21 47 47 H 1.09002 * 110.40600 * 217.08746 * 29 16 15 48 48 H 1.08994 * 110.34903 * 94.74454 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7652 5 6 2.2364 -1.1212 0.7648 6 1 1.6112 -1.8588 1.2678 7 6 3.5292 -0.7815 1.4607 8 8 3.9718 0.3461 1.4014 9 7 4.1937 -1.7308 2.1490 10 6 3.6594 -3.0931 2.2202 11 6 5.4507 -1.4007 2.8251 12 6 5.1551 -0.9349 4.2522 13 1 4.4376 -0.1145 4.2524 14 6 6.4607 -0.5320 4.9874 15 6 6.1079 -0.7657 6.4715 16 7 4.9924 -1.7226 6.5096 17 6 4.3788 -2.1699 7.6231 18 8 3.4647 -2.9620 7.5351 19 6 4.8288 -1.6858 8.9775 20 16 3.8182 -2.4631 10.2622 21 6 4.5399 -1.7404 11.6981 22 1 5.3592 -1.0437 11.5983 23 6 4.0555 -2.0664 12.9573 24 7 4.5950 -1.5268 14.0299 25 14 2.6390 -3.2718 13.1298 26 1 3.1750 -4.6513 13.2517 27 1 1.8502 -2.9382 14.3431 28 1 1.7657 -3.1840 11.9320 29 6 4.6544 -2.1109 5.1276 30 1 -0.3633 -0.9259 -0.4460 31 1 -0.3633 0.8492 -0.5789 32 1 -0.3634 0.0767 1.0248 33 1 1.6113 -1.8579 -1.2691 34 1 3.1716 -0.8748 -1.2685 35 1 4.0498 -3.6804 1.3890 36 1 3.9594 -3.5522 3.1621 37 1 2.5715 -3.0601 2.1624 38 1 6.0894 -2.2835 2.8560 39 1 5.9579 -0.6043 2.2806 40 1 7.2884 -1.1724 4.6823 41 1 6.6967 0.5168 4.8076 42 1 6.9690 -1.1791 6.9966 43 1 5.8085 0.1749 6.9338 44 1 5.8752 -1.9507 9.1288 45 1 4.7166 -0.6030 9.0319 46 1 4.2563 -1.7544 14.9099 47 1 3.5765 -2.2319 5.0197 48 1 5.1696 -3.0322 4.8560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581775650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = -45.753537 kcal Electronic energy + Delta-G solvation = -26976.683554 eV Core-core repulsion = 23158.657050 eV Total energy + Delta-G solvation = -3818.026504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71960 -39.80087 -37.88268 -37.01303 -35.76023 -32.54921 -32.43255 -29.78010 -29.69828 -28.93526 -27.51008 -26.14536 -25.59509 -23.93356 -22.87626 -21.26379 -20.71496 -19.47761 -19.29918 -17.77772 -17.64838 -16.84342 -16.71320 -16.29818 -15.65973 -15.31433 -15.02570 -14.82141 -14.49589 -14.32838 -13.90517 -13.76264 -13.61198 -13.41651 -13.38717 -13.11193 -12.90337 -12.83935 -12.75806 -12.56964 -12.37671 -12.20501 -11.90170 -11.85153 -11.66558 -11.26646 -11.19253 -11.01938 -10.96912 -10.79068 -10.60567 -10.46623 -10.07575 -9.86404 -9.55481 -9.06033 -9.00656 -8.59783 -8.50543 -6.92636 -6.29145 -4.00993 2.12761 2.54527 2.68581 2.92999 3.19870 3.32728 3.38241 3.50155 3.59794 4.02074 4.18403 4.30919 4.32789 4.33142 4.34869 4.47211 4.60187 4.69003 4.80326 4.88428 4.90534 4.96487 5.06286 5.09807 5.10366 5.18001 5.18603 5.26657 5.31215 5.32842 5.36640 5.41765 5.49026 5.53770 5.57782 5.62881 5.65538 5.70592 5.83807 5.89376 5.92947 6.01690 6.14825 6.32668 6.95775 7.56570 7.82353 7.93956 8.41276 8.41927 9.16935 10.80047 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002107 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.993326 B =13284.032877 C =14055.379269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.194 4.194 6 H 0.126 0.874 7 C 0.545 3.455 8 O -0.538 6.538 9 N -0.613 5.613 10 C 0.073 3.927 11 C 0.128 3.872 12 C -0.119 4.119 13 H 0.090 0.910 14 C -0.122 4.122 15 C 0.101 3.899 16 N -0.625 5.625 17 C 0.547 3.453 18 O -0.520 6.520 19 C -0.118 4.118 20 S -0.143 6.143 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 C 0.116 3.884 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.075 0.925 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 0.058 -31.356 31.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.215 4.215 6 H 0.143 0.857 7 C 0.333 3.667 8 O -0.415 6.415 9 N -0.345 5.345 10 C -0.070 4.070 11 C 0.005 3.995 12 C -0.139 4.139 13 H 0.108 0.892 14 C -0.161 4.161 15 C -0.023 4.023 16 N -0.362 5.362 17 C 0.336 3.664 18 O -0.394 6.394 19 C -0.268 4.268 20 S 0.083 5.917 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 C -0.007 4.007 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.196 -0.548 -31.217 31.244 hybrid contribution 0.646 0.323 0.697 1.004 sum -0.550 -0.225 -30.520 30.525 Atomic orbital electron populations 1.21413 0.92096 1.02267 1.02426 1.22391 0.95358 0.95043 1.01226 0.86514 1.23088 1.03110 1.01680 0.90597 1.22374 0.97815 1.05530 0.95802 0.85656 1.19699 0.84656 0.84315 0.77989 1.90695 1.68327 1.20766 1.61750 1.47762 1.24173 1.10742 1.51827 1.21956 1.00049 0.82250 1.02762 1.21434 0.85140 1.01731 0.91183 1.22824 0.98379 0.98619 0.94104 0.89208 1.22630 0.97040 1.02825 0.93578 1.22023 0.89729 0.93312 0.97217 1.48485 1.35830 1.46263 1.05660 1.19993 0.81508 0.80487 0.84444 1.90695 1.28714 1.33662 1.86350 1.23255 1.04675 1.04613 0.94255 1.84767 1.46946 1.61164 0.98788 1.22306 1.22395 1.31673 0.90429 0.89385 1.24718 0.96522 0.95506 0.94605 1.69941 1.41111 1.42500 0.98092 0.86728 0.83286 0.81811 0.79989 1.19207 1.19929 1.15931 1.22246 1.01124 0.96430 0.80937 0.92312 0.91594 0.91781 0.87750 0.88368 0.92231 0.90466 0.90659 0.89939 0.89138 0.90221 0.89585 0.90971 0.91067 0.88575 0.88555 0.91942 0.90636 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.19 37.16 0.38 -0.33 16 2 C -0.12 -0.89 5.92 -90.62 -0.54 -1.42 16 3 H 0.12 1.04 7.67 -51.93 -0.40 0.65 16 4 C -0.15 -0.88 9.88 -26.73 -0.26 -1.14 16 5 C -0.19 -1.44 5.01 -91.77 -0.46 -1.90 16 6 H 0.13 0.75 6.44 -51.93 -0.33 0.41 16 7 C 0.54 5.43 7.46 -10.99 -0.08 5.34 16 8 O -0.54 -7.23 15.84 5.55 0.09 -7.14 16 9 N -0.61 -4.92 2.82 -181.57 -0.51 -5.43 16 10 C 0.07 0.41 10.02 59.85 0.60 1.01 16 11 C 0.13 0.97 4.92 -4.04 -0.02 0.95 16 12 C -0.12 -1.08 3.27 -88.47 -0.29 -1.37 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -0.95 6.42 -24.90 -0.16 -1.11 16 15 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 16 N -0.63 -8.81 3.33 -170.48 -0.57 -9.38 16 17 C 0.55 10.27 7.87 -10.98 -0.09 10.18 16 18 O -0.52 -11.55 16.12 5.56 0.09 -11.46 16 19 C -0.12 -2.36 5.35 36.01 0.19 -2.17 16 20 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 21 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 22 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 23 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 25 Si 0.86 21.90 27.74 -169.99 -4.72 17.18 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 29 C 0.12 1.31 4.92 -2.50 -0.01 1.29 16 30 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.43 8.05 -51.93 -0.42 0.02 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.45 6.23 -51.93 -0.32 0.12 16 37 H 0.07 0.37 5.99 -51.93 -0.31 0.06 16 38 H 0.08 0.47 7.96 -51.93 -0.41 0.06 16 39 H 0.09 0.76 7.42 -51.93 -0.39 0.37 16 40 H 0.08 0.50 8.04 -51.92 -0.42 0.08 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 45 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.08 0.97 7.96 -51.93 -0.41 0.55 16 48 H 0.06 0.65 7.44 -51.93 -0.39 0.26 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -36.34 401.42 -9.35 -45.69 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.02 Total: -2.25 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.54 Total: -1.72 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.30 Total: -40.67 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.34 -9.35 -45.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581775650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.067 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds