Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 115.55018 * 2 1 4 4 C 1.52998 * 117.50034 * 214.32434 * 2 1 3 5 5 C 1.53001 * 60.00347 * 252.51286 * 4 2 1 6 6 H 1.08996 * 117.50157 * 107.48798 * 5 4 2 7 7 C 1.50702 * 117.49877 * 252.51183 * 5 4 2 8 8 O 1.21284 * 120.00072 * 68.61582 * 7 5 4 9 9 N 1.34774 * 120.00107 * 248.61879 * 7 5 4 10 10 C 1.46500 * 119.99929 * 0.02562 * 9 7 5 11 11 C 1.46496 * 120.00079 * 179.97438 * 9 7 5 12 12 C 1.53005 * 109.46802 * 90.00289 * 11 9 7 13 13 H 1.08995 * 110.88757 * 305.69717 * 12 11 9 14 14 C 1.55155 * 111.00323 * 181.81920 * 12 11 9 15 15 C 1.54328 * 102.94291 * 206.42657 * 14 12 11 16 16 N 1.47017 * 107.27134 * 22.19146 * 15 14 12 17 17 C 1.34779 * 125.65004 * 181.10406 * 16 15 14 18 18 O 1.21281 * 119.99896 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99906 * 359.97150 * 17 16 15 20 20 S 1.80997 * 109.46982 * 180.02562 * 19 17 16 21 21 C 1.76203 * 99.99837 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00017 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00055 * 179.97438 * 21 20 19 24 24 N 1.31631 * 119.99680 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99812 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47113 * 90.00018 * 25 23 21 27 27 H 1.48507 * 109.46809 * 210.00020 * 25 23 21 28 28 H 1.48501 * 109.47027 * 329.99867 * 25 23 21 29 29 C 1.47472 * 108.72383 * 1.02900 * 16 15 14 30 30 H 1.09002 * 109.47153 * 154.28028 * 1 2 3 31 31 H 1.09001 * 109.46832 * 34.28219 * 1 2 3 32 32 H 1.09004 * 109.47261 * 274.28200 * 1 2 3 33 33 H 1.08998 * 117.50041 * 0.02562 * 4 2 1 34 34 H 1.09004 * 117.49976 * 145.02046 * 4 2 1 35 35 H 1.09002 * 109.47499 * 89.99364 * 10 9 7 36 36 H 1.08993 * 109.47192 * 210.00236 * 10 9 7 37 37 H 1.09000 * 109.46920 * 329.99774 * 10 9 7 38 38 H 1.09002 * 109.47370 * 209.99899 * 11 9 7 39 39 H 1.08998 * 109.47307 * 330.00094 * 11 9 7 40 40 H 1.09007 * 110.72053 * 324.78610 * 14 12 11 41 41 H 1.08998 * 110.72383 * 88.06106 * 14 12 11 42 42 H 1.08998 * 109.88340 * 141.61027 * 15 14 12 43 43 H 1.09001 * 109.87894 * 262.61878 * 15 14 12 44 44 H 1.09002 * 109.46996 * 300.00833 * 19 17 16 45 45 H 1.09001 * 109.46656 * 59.99987 * 19 17 16 46 46 H 0.97001 * 119.99440 * 179.97438 * 24 23 21 47 47 H 1.09002 * 110.40600 * 217.08746 * 29 16 15 48 48 H 1.08994 * 110.34903 * 94.74454 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 -0.7652 5 6 2.2364 -1.1212 0.7648 6 1 1.6112 -1.8588 1.2678 7 6 3.5292 -0.7815 1.4607 8 8 3.9718 0.3461 1.4014 9 7 4.1937 -1.7308 2.1490 10 6 3.6594 -3.0931 2.2202 11 6 5.4507 -1.4007 2.8251 12 6 5.1551 -0.9349 4.2522 13 1 4.4376 -0.1145 4.2524 14 6 6.4607 -0.5320 4.9874 15 6 6.1079 -0.7657 6.4715 16 7 4.9924 -1.7226 6.5096 17 6 4.3788 -2.1699 7.6231 18 8 3.4647 -2.9620 7.5351 19 6 4.8288 -1.6858 8.9775 20 16 3.8182 -2.4631 10.2622 21 6 4.5399 -1.7404 11.6981 22 1 5.3592 -1.0437 11.5983 23 6 4.0555 -2.0664 12.9573 24 7 4.5950 -1.5268 14.0299 25 14 2.6390 -3.2718 13.1298 26 1 3.1750 -4.6513 13.2517 27 1 1.8502 -2.9382 14.3431 28 1 1.7657 -3.1840 11.9320 29 6 4.6544 -2.1109 5.1276 30 1 -0.3633 -0.9259 -0.4460 31 1 -0.3633 0.8492 -0.5789 32 1 -0.3634 0.0767 1.0248 33 1 1.6113 -1.8579 -1.2691 34 1 3.1716 -0.8748 -1.2685 35 1 4.0498 -3.6804 1.3890 36 1 3.9594 -3.5522 3.1621 37 1 2.5715 -3.0601 2.1624 38 1 6.0894 -2.2835 2.8560 39 1 5.9579 -0.6043 2.2806 40 1 7.2884 -1.1724 4.6823 41 1 6.6967 0.5168 4.8076 42 1 6.9690 -1.1791 6.9966 43 1 5.8085 0.1749 6.9338 44 1 5.8752 -1.9507 9.1288 45 1 4.7166 -0.6030 9.0319 46 1 4.2563 -1.7544 14.9099 47 1 3.5765 -2.2319 5.0197 48 1 5.1696 -3.0322 4.8560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581775650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -68.688341 kcal Electronic energy + Delta-G solvation = -26977.678082 eV Core-core repulsion = 23158.657050 eV Total energy + Delta-G solvation = -3819.021032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50277 -40.89938 -38.89563 -37.76729 -36.55084 -34.69436 -33.57874 -31.05953 -30.54019 -29.53661 -28.25476 -27.85177 -26.83578 -24.78723 -23.62704 -21.85960 -21.42413 -20.83311 -19.95616 -19.64099 -18.32888 -18.14835 -17.71680 -17.16285 -17.10145 -16.63698 -16.39759 -15.90614 -15.69573 -15.31215 -14.98812 -14.91385 -14.63841 -14.38112 -14.14885 -14.08941 -13.87131 -13.63551 -13.61011 -13.45474 -13.36041 -13.27681 -13.02922 -12.92179 -12.76369 -12.69039 -12.46550 -12.28940 -11.96656 -11.87948 -11.69423 -11.33472 -11.18829 -11.07594 -11.00343 -10.78992 -10.57901 -9.76898 -9.71687 -9.03710 -8.53355 -6.25172 0.93421 1.30071 1.41493 1.44468 1.46411 1.51998 1.95250 2.02555 2.23576 2.65022 2.83028 2.84580 3.33186 3.45988 3.54557 3.73535 3.77203 3.80096 3.84121 4.07410 4.11390 4.21602 4.26649 4.32180 4.33711 4.37069 4.40321 4.49925 4.63225 4.67477 4.72077 4.77304 4.78884 4.84703 4.89416 4.90313 4.95413 5.02258 5.05940 5.19435 5.19928 5.30940 5.39194 5.52298 5.68776 6.09125 6.29629 6.31870 6.91287 7.00031 7.11963 8.58997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002107 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.993326 B =13284.032877 C =14055.379269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.135 4.135 3 H 0.092 0.908 4 C -0.128 4.128 5 C -0.201 4.201 6 H 0.142 0.858 7 C 0.535 3.465 8 O -0.584 6.584 9 N -0.611 5.611 10 C 0.068 3.932 11 C 0.129 3.871 12 C -0.107 4.107 13 H 0.063 0.937 14 C -0.110 4.110 15 C 0.089 3.911 16 N -0.618 5.618 17 C 0.547 3.453 18 O -0.562 6.562 19 C -0.103 4.103 20 S -0.173 6.173 21 C -0.530 4.530 22 H 0.061 0.939 23 C 0.045 3.955 24 N -0.915 5.915 25 Si 0.915 3.085 26 H -0.260 1.260 27 H -0.258 1.258 28 H -0.238 1.238 29 C 0.114 3.886 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.277 0.723 47 H 0.058 0.942 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 -1.370 -33.443 33.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.154 4.154 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.221 4.221 6 H 0.160 0.840 7 C 0.325 3.675 8 O -0.464 6.464 9 N -0.342 5.342 10 C -0.074 4.074 11 C 0.006 3.994 12 C -0.128 4.128 13 H 0.082 0.918 14 C -0.148 4.148 15 C -0.034 4.034 16 N -0.352 5.352 17 C 0.335 3.665 18 O -0.441 6.441 19 C -0.254 4.254 20 S 0.054 5.946 21 C -0.677 4.677 22 H 0.080 0.920 23 C -0.160 4.160 24 N -0.553 5.553 25 Si 0.737 3.263 26 H -0.185 1.185 27 H -0.182 1.182 28 H -0.162 1.162 29 C -0.008 4.008 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.960 -1.974 -33.329 33.401 hybrid contribution 0.705 0.859 1.233 1.660 sum -0.255 -1.114 -32.096 32.116 Atomic orbital electron populations 1.21395 0.90768 1.03348 1.02236 1.22392 0.96367 0.94267 1.02398 0.89013 1.23159 1.02831 1.01051 0.89492 1.22437 0.96919 1.06005 0.96784 0.83998 1.20186 0.85336 0.83961 0.77985 1.90667 1.69613 1.22585 1.63564 1.47892 1.24061 1.11372 1.50867 1.22137 1.00666 0.80969 1.03590 1.21488 0.85377 1.02777 0.89733 1.22682 0.98417 0.96780 0.94881 0.91848 1.22648 0.96897 1.04313 0.90963 1.22361 0.88859 0.92483 0.99654 1.48472 1.35615 1.45584 1.05558 1.19639 0.81469 0.80461 0.84954 1.90674 1.30701 1.35828 1.86925 1.23207 1.04216 1.04595 0.93383 1.84666 1.48628 1.61918 0.99413 1.22432 1.21818 1.31262 0.92200 0.92032 1.25582 0.98947 0.97158 0.94358 1.70017 1.42635 1.43864 0.98791 0.85853 0.80373 0.79772 0.80289 1.18497 1.18224 1.16167 1.22448 1.00542 0.98234 0.79538 0.90654 0.91194 0.92493 0.85170 0.89018 0.90196 0.90447 0.89961 0.87080 0.89784 0.87559 0.88307 0.89638 0.91166 0.87052 0.87576 0.91309 0.92373 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.19 71.98 0.73 -0.50 16 2 C -0.14 -1.93 5.92 -10.79 -0.06 -1.99 16 3 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 4 C -0.13 -1.32 9.88 30.59 0.30 -1.01 16 5 C -0.20 -2.76 5.01 -11.54 -0.06 -2.82 16 6 H 0.14 1.43 6.44 -2.39 -0.02 1.41 16 7 C 0.54 10.43 7.46 87.66 0.65 11.08 16 8 O -0.58 -16.07 15.84 -3.04 -0.05 -16.11 16 9 N -0.61 -8.84 2.82 -846.77 -2.39 -11.23 16 10 C 0.07 0.60 10.02 127.77 1.28 1.88 16 11 C 0.13 1.68 4.92 86.38 0.43 2.10 16 12 C -0.11 -1.76 3.27 -9.40 -0.03 -1.79 16 13 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 14 C -0.11 -1.39 6.42 31.78 0.20 -1.19 16 15 C 0.09 1.67 6.49 86.73 0.56 2.24 16 16 N -0.62 -16.46 3.33 -811.67 -2.70 -19.16 16 17 C 0.55 20.13 7.87 87.66 0.69 20.82 16 18 O -0.56 -24.94 16.12 -3.03 -0.05 -24.99 16 19 C -0.10 -4.10 5.35 71.24 0.38 -3.71 16 20 S -0.17 -8.92 18.55 -56.49 -1.05 -9.97 16 21 C -0.53 -31.20 10.04 67.96 0.68 -30.52 16 22 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 23 C 0.05 2.67 5.50 84.86 0.47 3.13 16 24 N -0.92 -55.96 13.97 21.65 0.30 -55.66 16 25 Si 0.92 45.23 27.74 68.60 1.90 47.13 16 26 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 29 C 0.11 2.38 4.92 86.85 0.43 2.81 16 30 H 0.07 0.52 7.90 -2.39 -0.02 0.50 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.13 0.67 8.05 -2.39 -0.02 0.65 16 34 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.08 0.70 6.23 -2.39 -0.01 0.69 16 37 H 0.08 0.62 5.99 -2.39 -0.01 0.61 16 38 H 0.11 0.84 7.96 -2.39 -0.02 0.82 16 39 H 0.08 1.27 7.42 -2.39 -0.02 1.25 16 40 H 0.11 0.86 8.04 -2.38 -0.02 0.84 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 45 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 46 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.06 1.44 7.96 -2.39 -0.02 1.42 16 48 H 0.09 1.47 7.44 -2.39 -0.02 1.45 16 Total: -1.00 -81.05 401.42 3.53 -77.52 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.90 Total: 11.94 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 6.66 Total: 0.52 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -4.78 Total: -86.05 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.10 Total: -41.10 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -81.05 3.53 -77.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581775650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.831 kcal (2) G-P(sol) polarization free energy of solvation -81.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds