Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.55253 * 2 1 4 4 C 1.52995 * 117.51838 * 214.29473 * 2 1 3 5 5 C 1.53003 * 117.49853 * 145.66361 * 2 1 3 6 6 H 1.08994 * 117.49972 * 0.02562 * 5 2 1 7 7 C 1.50698 * 117.50258 * 215.00153 * 5 2 1 8 8 O 1.21293 * 119.99775 * 0.02562 * 7 5 2 9 9 N 1.34769 * 120.00644 * 180.02562 * 7 5 2 10 10 C 1.46504 * 119.99588 * 0.02562 * 9 7 5 11 11 C 1.46499 * 120.00562 * 180.02562 * 9 7 5 12 12 C 1.53004 * 109.46720 * 269.99673 * 11 9 7 13 13 H 1.09002 * 110.88605 * 54.29804 * 12 11 9 14 14 C 1.55158 * 111.00209 * 178.17613 * 12 11 9 15 15 C 1.54330 * 102.94056 * 153.61337 * 14 12 11 16 16 N 1.47022 * 107.27093 * 337.81035 * 15 14 12 17 17 C 1.34778 * 125.64623 * 178.97616 * 16 15 14 18 18 O 1.21278 * 119.99645 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99956 * 359.97438 * 17 16 15 20 20 S 1.80999 * 109.46953 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99912 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00363 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99809 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99853 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47039 * 59.99735 * 25 23 21 27 27 H 1.48496 * 109.47485 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47099 * 300.00254 * 25 23 21 29 29 C 1.47523 * 108.71559 * 358.93837 * 16 15 14 30 30 H 1.09003 * 109.47019 * 274.33195 * 1 2 3 31 31 H 1.08998 * 109.47110 * 34.32866 * 1 2 3 32 32 H 1.08999 * 109.47338 * 154.33434 * 1 2 3 33 33 H 1.09008 * 117.49897 * 145.02832 * 4 2 1 34 34 H 1.08995 * 117.50182 * 0.02562 * 4 2 1 35 35 H 1.09007 * 109.46995 * 270.00155 * 10 9 7 36 36 H 1.08996 * 109.47053 * 29.99812 * 10 9 7 37 37 H 1.09001 * 109.47234 * 150.00340 * 10 9 7 38 38 H 1.08999 * 109.47264 * 149.99838 * 11 9 7 39 39 H 1.08995 * 109.46921 * 29.99539 * 11 9 7 40 40 H 1.08996 * 110.72495 * 271.98095 * 14 12 11 41 41 H 1.09005 * 110.72041 * 35.25394 * 14 12 11 42 42 H 1.08998 * 109.87833 * 97.22798 * 15 14 12 43 43 H 1.08997 * 109.88366 * 218.39206 * 15 14 12 44 44 H 1.08997 * 109.47291 * 300.00134 * 19 17 16 45 45 H 1.09003 * 109.47355 * 60.00491 * 19 17 16 46 46 H 0.97002 * 119.99962 * 179.97438 * 24 23 21 47 47 H 1.09001 * 110.37251 * 265.30968 * 29 16 15 48 48 H 1.09004 * 110.41044 * 142.95250 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6112 -1.8581 1.2687 7 6 3.5290 -0.7805 1.4616 8 8 3.9711 0.3474 1.4023 9 7 4.1937 -1.7293 2.1502 10 6 3.6599 -3.0918 2.2214 11 6 5.4499 -1.3984 2.8274 12 6 6.6215 -1.6334 1.8718 13 1 6.4780 -1.0874 0.9394 14 6 7.9688 -1.2498 2.5390 15 6 8.9882 -2.1380 1.7948 16 7 8.2459 -3.2731 1.2274 17 6 8.7756 -4.2663 0.4862 18 8 8.0653 -5.1562 0.0685 19 6 10.2504 -4.2711 0.1765 20 16 10.6512 -5.7225 -0.8279 21 6 12.3844 -5.4822 -1.0349 22 1 12.8675 -4.6244 -0.5910 23 6 13.1288 -6.3950 -1.7693 24 7 12.5399 -7.4403 -2.3108 25 14 14.9662 -6.1399 -1.9893 26 1 15.6267 -6.1258 -0.6593 27 1 15.5251 -7.2460 -2.8073 28 1 15.2075 -4.8453 -2.6755 29 6 6.8253 -3.1455 1.6042 30 1 -0.3633 0.0776 1.0248 31 1 -0.3633 0.8486 -0.5795 32 1 -0.3634 -0.9262 -0.4451 33 1 3.1721 -0.8750 -1.2676 34 1 1.6120 -1.8585 -1.2681 35 1 3.0043 -3.1804 3.0878 36 1 3.0951 -3.3086 1.3148 37 1 4.4831 -3.8001 2.3149 38 1 5.5661 -2.0313 3.7072 39 1 5.4337 -0.3521 3.1321 40 1 8.1902 -0.1942 2.3822 41 1 7.9540 -1.4880 3.6026 42 1 9.4622 -1.5682 0.9956 43 1 9.7431 -2.5003 2.4925 44 1 10.5093 -3.3659 -0.3727 45 1 10.8170 -4.3061 1.1071 46 1 13.0601 -8.0780 -2.8244 47 1 6.6188 -3.7216 2.5062 48 1 6.1841 -3.4758 0.7870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581775651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -47.170763 kcal Electronic energy + Delta-G solvation = -26974.601880 eV Core-core repulsion = 23156.513920 eV Total energy + Delta-G solvation = -3818.087960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67454 -39.71206 -37.80207 -36.95428 -35.71064 -32.47328 -32.41775 -29.72360 -29.59058 -28.89905 -27.44523 -26.08973 -25.45408 -23.83669 -22.81569 -21.24755 -20.66135 -19.36871 -19.25018 -17.73376 -17.61592 -16.79729 -16.60064 -16.20819 -15.65098 -15.14620 -14.81739 -14.77945 -14.57374 -14.26456 -13.90530 -13.76972 -13.60514 -13.39412 -13.25723 -13.09706 -12.81389 -12.77786 -12.61489 -12.37876 -12.35703 -12.15751 -11.79603 -11.78655 -11.64601 -11.14326 -11.04094 -11.03572 -10.93230 -10.76854 -10.74494 -10.44673 -10.04112 -9.82711 -9.43340 -9.05919 -9.02139 -8.50900 -8.24245 -6.50508 -6.21545 -3.92331 2.16264 2.57387 2.91525 3.05764 3.23510 3.25974 3.29246 3.44118 3.61836 4.05774 4.19795 4.25224 4.36806 4.37650 4.39783 4.53993 4.67843 4.79995 4.90890 4.92656 4.99533 5.06349 5.11406 5.13476 5.15929 5.21286 5.33453 5.35192 5.36657 5.37896 5.44445 5.51692 5.55843 5.59104 5.64279 5.64628 5.70958 5.78885 5.91019 5.93825 5.97565 6.14323 6.19158 6.41911 6.99686 7.59215 7.67126 7.85708 8.35080 8.54962 9.23510 10.85845 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.002013 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.036008 B =13905.673043 C =14478.443911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.117 0.883 4 C -0.147 4.147 5 C -0.194 4.194 6 H 0.124 0.876 7 C 0.545 3.455 8 O -0.539 6.539 9 N -0.613 5.613 10 C 0.072 3.928 11 C 0.128 3.872 12 C -0.118 4.118 13 H 0.089 0.911 14 C -0.122 4.122 15 C 0.102 3.898 16 N -0.627 5.627 17 C 0.549 3.451 18 O -0.517 6.517 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C 0.115 3.885 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.063 0.937 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 14.886 11.639 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.215 4.215 6 H 0.141 0.859 7 C 0.334 3.666 8 O -0.416 6.416 9 N -0.345 5.345 10 C -0.071 4.071 11 C 0.005 3.995 12 C -0.139 4.139 13 H 0.107 0.893 14 C -0.161 4.161 15 C -0.021 4.021 16 N -0.365 5.365 17 C 0.337 3.663 18 O -0.391 6.391 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.008 4.008 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.290 13.897 10.834 28.414 hybrid contribution 2.139 0.987 0.437 2.396 sum -20.150 14.884 11.272 27.470 Atomic orbital electron populations 1.21400 0.92179 1.02341 1.02137 1.22387 0.95240 0.95068 1.01451 0.86547 1.23124 1.03283 1.01489 0.90516 1.22329 0.97737 1.05372 0.96022 0.85853 1.19726 0.84588 0.84312 0.78018 1.90693 1.68819 1.21026 1.61075 1.47751 1.23586 1.10715 1.52473 1.21948 1.00229 0.82450 1.02439 1.21431 0.81335 1.02754 0.93967 1.22815 0.94589 0.96163 1.00306 0.89303 1.22630 0.93406 1.00193 0.99867 1.21990 0.95008 0.87490 0.97631 1.48546 1.08793 1.25297 1.53832 1.20029 0.89892 0.79932 0.76428 1.90698 1.62112 1.35384 1.50939 1.23508 0.93638 1.07339 1.05248 1.85374 1.09001 1.24875 1.64167 1.22820 0.93067 1.13193 1.39298 0.90982 1.24993 0.99403 0.94453 0.94716 1.70008 1.36424 1.11620 1.32233 0.86221 0.82900 0.77992 0.78372 1.19937 1.20792 1.19928 1.22242 0.83301 0.94957 1.00256 0.92006 0.91621 0.92275 0.88162 0.87606 0.92374 0.90522 0.90362 0.89965 0.89178 0.89690 0.90270 0.91248 0.91129 0.89329 0.89304 0.92127 0.91862 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.19 37.16 0.38 -0.28 16 2 C -0.12 -0.93 5.92 -90.62 -0.54 -1.46 16 3 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 4 C -0.15 -1.08 9.88 -26.73 -0.26 -1.34 16 5 C -0.19 -1.49 4.52 -91.77 -0.41 -1.91 16 6 H 0.12 0.70 7.26 -51.93 -0.38 0.33 16 7 C 0.55 5.60 7.46 -10.99 -0.08 5.52 16 8 O -0.54 -7.39 15.84 5.55 0.09 -7.30 16 9 N -0.61 -5.14 2.82 -181.57 -0.51 -5.65 16 10 C 0.07 0.44 9.76 59.85 0.58 1.02 16 11 C 0.13 1.02 4.92 -4.04 -0.02 1.00 16 12 C -0.12 -1.12 3.27 -88.47 -0.29 -1.41 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.00 6.42 -24.89 -0.16 -1.16 16 15 C 0.10 1.13 6.49 -3.06 -0.02 1.11 16 16 N -0.63 -9.27 3.33 -170.44 -0.57 -9.84 16 17 C 0.55 10.82 7.87 -10.99 -0.09 10.73 16 18 O -0.52 -12.11 16.12 5.56 0.09 -12.02 16 19 C -0.15 -3.08 5.35 36.00 0.19 -2.89 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 25 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 C 0.12 1.37 4.92 -2.48 -0.01 1.36 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 33 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.11 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.42 6.64 -51.93 -0.34 0.07 16 37 H 0.08 0.49 6.22 -51.93 -0.32 0.17 16 38 H 0.08 0.50 7.97 -51.93 -0.41 0.09 16 39 H 0.09 0.79 7.42 -51.93 -0.39 0.40 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.06 0.68 7.44 -51.93 -0.39 0.29 16 48 H 0.08 1.02 7.96 -51.93 -0.41 0.60 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -36.64 404.83 -9.89 -46.54 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -8.06 Total: -2.10 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.53 Total: -2.78 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.35 Total: -41.03 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.64 -9.89 -46.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581775651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.635 kcal (2) G-P(sol) polarization free energy of solvation -36.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds