Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 115.55253 * 2 1 4 4 C 1.52995 * 117.51838 * 214.29473 * 2 1 3 5 5 C 1.53003 * 117.49853 * 145.66361 * 2 1 3 6 6 H 1.08994 * 117.49972 * 0.02562 * 5 2 1 7 7 C 1.50698 * 117.50258 * 215.00153 * 5 2 1 8 8 O 1.21293 * 119.99775 * 0.02562 * 7 5 2 9 9 N 1.34769 * 120.00644 * 180.02562 * 7 5 2 10 10 C 1.46504 * 119.99588 * 0.02562 * 9 7 5 11 11 C 1.46499 * 120.00562 * 180.02562 * 9 7 5 12 12 C 1.53004 * 109.46720 * 269.99673 * 11 9 7 13 13 H 1.09002 * 110.88605 * 54.29804 * 12 11 9 14 14 C 1.55158 * 111.00209 * 178.17613 * 12 11 9 15 15 C 1.54330 * 102.94056 * 153.61337 * 14 12 11 16 16 N 1.47022 * 107.27093 * 337.81035 * 15 14 12 17 17 C 1.34778 * 125.64623 * 178.97616 * 16 15 14 18 18 O 1.21278 * 119.99645 * 179.97438 * 17 16 15 19 19 C 1.50697 * 119.99956 * 359.97438 * 17 16 15 20 20 S 1.80999 * 109.46953 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99912 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00363 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99809 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99853 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47039 * 59.99735 * 25 23 21 27 27 H 1.48496 * 109.47485 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47099 * 300.00254 * 25 23 21 29 29 C 1.47523 * 108.71559 * 358.93837 * 16 15 14 30 30 H 1.09003 * 109.47019 * 274.33195 * 1 2 3 31 31 H 1.08998 * 109.47110 * 34.32866 * 1 2 3 32 32 H 1.08999 * 109.47338 * 154.33434 * 1 2 3 33 33 H 1.09008 * 117.49897 * 145.02832 * 4 2 1 34 34 H 1.08995 * 117.50182 * 0.02562 * 4 2 1 35 35 H 1.09007 * 109.46995 * 270.00155 * 10 9 7 36 36 H 1.08996 * 109.47053 * 29.99812 * 10 9 7 37 37 H 1.09001 * 109.47234 * 150.00340 * 10 9 7 38 38 H 1.08999 * 109.47264 * 149.99838 * 11 9 7 39 39 H 1.08995 * 109.46921 * 29.99539 * 11 9 7 40 40 H 1.08996 * 110.72495 * 271.98095 * 14 12 11 41 41 H 1.09005 * 110.72041 * 35.25394 * 14 12 11 42 42 H 1.08998 * 109.87833 * 97.22798 * 15 14 12 43 43 H 1.08997 * 109.88366 * 218.39206 * 15 14 12 44 44 H 1.08997 * 109.47291 * 300.00134 * 19 17 16 45 45 H 1.09003 * 109.47355 * 60.00491 * 19 17 16 46 46 H 0.97002 * 119.99962 * 179.97438 * 24 23 21 47 47 H 1.09001 * 110.37251 * 265.30968 * 29 16 15 48 48 H 1.09004 * 110.41044 * 142.95250 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6112 -1.8581 1.2687 7 6 3.5290 -0.7805 1.4616 8 8 3.9711 0.3474 1.4023 9 7 4.1937 -1.7293 2.1502 10 6 3.6599 -3.0918 2.2214 11 6 5.4499 -1.3984 2.8274 12 6 6.6215 -1.6334 1.8718 13 1 6.4780 -1.0874 0.9394 14 6 7.9688 -1.2498 2.5390 15 6 8.9882 -2.1380 1.7948 16 7 8.2459 -3.2731 1.2274 17 6 8.7756 -4.2663 0.4862 18 8 8.0653 -5.1562 0.0685 19 6 10.2504 -4.2711 0.1765 20 16 10.6512 -5.7225 -0.8279 21 6 12.3844 -5.4822 -1.0349 22 1 12.8675 -4.6244 -0.5910 23 6 13.1288 -6.3950 -1.7693 24 7 12.5399 -7.4403 -2.3108 25 14 14.9662 -6.1399 -1.9893 26 1 15.6267 -6.1258 -0.6593 27 1 15.5251 -7.2460 -2.8073 28 1 15.2075 -4.8453 -2.6755 29 6 6.8253 -3.1455 1.6042 30 1 -0.3633 0.0776 1.0248 31 1 -0.3633 0.8486 -0.5795 32 1 -0.3634 -0.9262 -0.4451 33 1 3.1721 -0.8750 -1.2676 34 1 1.6120 -1.8585 -1.2681 35 1 3.0043 -3.1804 3.0878 36 1 3.0951 -3.3086 1.3148 37 1 4.4831 -3.8001 2.3149 38 1 5.5661 -2.0313 3.7072 39 1 5.4337 -0.3521 3.1321 40 1 8.1902 -0.1942 2.3822 41 1 7.9540 -1.4880 3.6026 42 1 9.4622 -1.5682 0.9956 43 1 9.7431 -2.5003 2.4925 44 1 10.5093 -3.3659 -0.3727 45 1 10.8170 -4.3061 1.1071 46 1 13.0601 -8.0780 -2.8244 47 1 6.6188 -3.7216 2.5062 48 1 6.1841 -3.4758 0.7870 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581775651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -70.289706 kcal Electronic energy + Delta-G solvation = -26975.604392 eV Core-core repulsion = 23156.513920 eV Total energy + Delta-G solvation = -3819.090473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49266 -40.87246 -38.87165 -37.77245 -36.54492 -34.60553 -33.55324 -30.98893 -30.52486 -29.53175 -28.23647 -27.67040 -26.81476 -24.74817 -23.62416 -21.90509 -21.39446 -20.77632 -19.94747 -19.60662 -18.29558 -18.10984 -17.69022 -17.08517 -16.89877 -16.69088 -16.32663 -16.01672 -15.63050 -15.23284 -15.07408 -14.74004 -14.46673 -14.38835 -14.10343 -14.08113 -13.76415 -13.65960 -13.57053 -13.41634 -13.23298 -13.17283 -12.94825 -12.88087 -12.78339 -12.64827 -12.43435 -12.33475 -11.97097 -11.76779 -11.68241 -11.34971 -11.14548 -11.02650 -11.01823 -10.79589 -10.32193 -9.74229 -9.71917 -8.70437 -8.36239 -6.15360 1.21557 1.40750 1.42960 1.43906 1.51696 1.53949 1.94101 2.06561 2.25725 2.83381 2.97664 3.19579 3.43180 3.45234 3.55366 3.76362 3.78101 3.84256 3.87011 4.09621 4.15971 4.23187 4.27660 4.29839 4.35733 4.40183 4.41229 4.50993 4.63516 4.66852 4.73898 4.77404 4.77640 4.84072 4.90076 4.91905 4.94784 5.01078 5.03366 5.19701 5.20761 5.33666 5.39512 5.40005 5.53023 6.17731 6.31041 6.34283 7.04490 7.06379 7.11279 8.72822 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.002013 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.036008 B =13905.673043 C =14478.443911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.146 4.146 5 C -0.193 4.193 6 H 0.149 0.851 7 C 0.535 3.465 8 O -0.583 6.583 9 N -0.611 5.611 10 C 0.068 3.932 11 C 0.129 3.871 12 C -0.106 4.106 13 H 0.062 0.938 14 C -0.110 4.110 15 C 0.090 3.910 16 N -0.620 5.620 17 C 0.545 3.455 18 O -0.566 6.566 19 C -0.121 4.121 20 S -0.148 6.148 21 C -0.548 4.548 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.263 1.263 29 C 0.114 3.886 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.272 0.728 47 H 0.084 0.916 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.463 15.992 13.652 30.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.145 4.145 3 H 0.111 0.889 4 C -0.184 4.184 5 C -0.214 4.214 6 H 0.167 0.833 7 C 0.325 3.675 8 O -0.464 6.464 9 N -0.342 5.342 10 C -0.074 4.074 11 C 0.006 3.994 12 C -0.127 4.127 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.032 4.032 16 N -0.355 5.355 17 C 0.334 3.666 18 O -0.444 6.444 19 C -0.272 4.272 20 S 0.079 5.921 21 C -0.696 4.696 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.185 1.185 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.008 4.008 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.231 15.032 12.894 29.773 hybrid contribution 2.040 0.723 -0.129 2.169 sum -20.191 15.755 12.765 28.615 Atomic orbital electron populations 1.21392 0.90188 1.03222 1.02714 1.22398 0.96651 0.93959 1.01522 0.88934 1.23149 1.02768 1.02039 0.90416 1.22422 0.96959 1.05985 0.96014 0.83297 1.20214 0.85347 0.84004 0.77922 1.90665 1.70084 1.22847 1.62762 1.47883 1.23463 1.11304 1.51581 1.22124 1.00597 0.80877 1.03828 1.21492 0.80449 1.03188 0.94250 1.22673 0.96349 0.93764 0.99879 0.91919 1.22651 0.91006 1.00356 1.00759 1.22352 0.96007 0.86645 0.98198 1.48521 1.10553 1.24545 1.51832 1.19760 0.89125 0.80646 0.77096 1.90675 1.62764 1.37673 1.53330 1.23308 0.95204 1.04017 1.04654 1.85541 1.10130 1.29868 1.66581 1.23157 0.93065 1.13732 1.39646 0.89977 1.26144 1.05102 0.93859 0.93998 1.70174 1.38656 1.12735 1.33085 0.84994 0.75751 0.78310 0.78885 1.18549 1.20254 1.18730 1.22441 0.81147 0.96999 1.00240 0.91467 0.91258 0.90968 0.90224 0.85474 0.90033 0.90006 0.90540 0.87101 0.89660 0.88187 0.87559 0.91176 0.89640 0.87980 0.87428 0.91920 0.89796 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.19 71.98 0.73 -0.36 16 2 C -0.13 -1.88 5.92 -10.80 -0.06 -1.94 16 3 H 0.09 1.82 7.67 -2.39 -0.02 1.80 16 4 C -0.15 -2.11 9.88 30.59 0.30 -1.81 16 5 C -0.19 -2.81 4.52 -11.54 -0.05 -2.86 16 6 H 0.15 1.34 7.26 -2.39 -0.02 1.33 16 7 C 0.54 10.85 7.46 87.66 0.65 11.50 16 8 O -0.58 -16.41 15.84 -3.07 -0.05 -16.46 16 9 N -0.61 -9.43 2.82 -846.74 -2.39 -11.81 16 10 C 0.07 0.68 9.76 127.77 1.25 1.92 16 11 C 0.13 1.79 4.92 86.38 0.43 2.21 16 12 C -0.11 -1.85 3.27 -9.40 -0.03 -1.88 16 13 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 14 C -0.11 -1.45 6.42 31.79 0.20 -1.25 16 15 C 0.09 1.77 6.49 86.73 0.56 2.34 16 16 N -0.62 -17.64 3.33 -811.53 -2.70 -20.34 16 17 C 0.55 21.61 7.87 87.66 0.69 22.30 16 18 O -0.57 -27.34 16.12 -3.02 -0.05 -27.39 16 19 C -0.12 -5.05 5.35 71.23 0.38 -4.67 16 20 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 21 C -0.55 -31.71 9.50 67.96 0.65 -31.07 16 22 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.80 5.49 84.86 0.47 1.26 16 24 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 25 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 29 C 0.11 2.57 4.92 86.84 0.43 3.00 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.49 7.90 -2.39 -0.02 0.47 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.13 1.26 8.05 -2.39 -0.02 1.24 16 35 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.08 0.75 6.64 -2.39 -0.02 0.73 16 37 H 0.08 0.82 6.22 -2.39 -0.01 0.80 16 38 H 0.11 0.93 7.97 -2.39 -0.02 0.91 16 39 H 0.09 1.34 7.42 -2.39 -0.02 1.32 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 41 H 0.11 0.91 8.04 -2.38 -0.02 0.89 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.10 3.95 8.14 -2.40 -0.02 3.94 16 45 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 46 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.08 1.60 7.44 -2.39 -0.02 1.58 16 48 H 0.05 1.50 7.96 -2.38 -0.02 1.48 16 Total: -1.00 -83.83 404.83 3.49 -80.33 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.94 Total: 16.68 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 6.59 Total: -1.29 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -4.80 Total: -88.10 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.10 Total: -43.85 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -83.83 3.49 -80.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581775651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.045 kcal (2) G-P(sol) polarization free energy of solvation -83.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds