Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.56769 * 2 1 4 4 C 1.53076 * 117.51281 * 214.28658 * 2 1 3 5 5 C 1.53002 * 59.98592 * 252.52850 * 4 2 1 6 6 H 1.09003 * 117.49365 * 252.49839 * 5 4 2 7 7 C 1.50695 * 117.49885 * 107.50376 * 5 4 2 8 8 O 1.21279 * 119.99998 * 291.25349 * 7 5 4 9 9 N 1.34772 * 120.00138 * 111.25043 * 7 5 4 10 10 C 1.46498 * 120.00193 * 174.90907 * 9 7 5 11 11 C 1.53004 * 110.01547 * 65.20585 * 10 9 7 12 12 N 1.46498 * 109.47307 * 54.43151 * 11 10 9 13 13 C 1.34777 * 120.00025 * 174.95691 * 12 11 10 14 14 O 1.21280 * 119.99928 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99787 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.46938 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00177 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00198 * 359.72236 * 17 16 15 19 19 C 1.38792 * 120.00390 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00463 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47315 * 119.99739 * 21 19 17 24 24 H 1.48496 * 109.47430 * 240.00117 * 21 19 17 25 25 C 1.54264 * 110.03377 * 186.59380 * 10 9 7 26 26 C 1.54967 * 104.16316 * 95.75534 * 25 10 9 27 27 C 1.54896 * 102.77273 * 37.88760 * 26 25 10 28 28 C 1.53876 * 110.03404 * 303.81390 * 10 9 7 29 29 H 1.09005 * 109.47355 * 274.31964 * 1 2 3 30 30 H 1.09005 * 109.46624 * 34.31627 * 1 2 3 31 31 H 1.08997 * 109.47576 * 154.31661 * 1 2 3 32 32 H 1.09003 * 117.49145 * 145.04105 * 4 2 1 33 33 H 1.09000 * 117.53228 * 0.02562 * 4 2 1 34 34 H 0.97004 * 119.99732 * 354.91262 * 9 7 5 35 35 H 1.09004 * 109.46935 * 294.43358 * 11 10 9 36 36 H 1.08999 * 109.46869 * 174.43120 * 11 10 9 37 37 H 0.97002 * 119.99737 * 354.95910 * 12 11 10 38 38 H 1.08995 * 109.47162 * 60.00142 * 15 13 12 39 39 H 1.09003 * 109.47015 * 300.00119 * 15 13 12 40 40 H 0.97007 * 120.00308 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.48945 * 214.40414 * 25 10 9 42 42 H 1.09000 * 110.48756 * 337.05079 * 25 10 9 43 43 H 1.08997 * 110.71960 * 279.57668 * 26 25 10 44 44 H 1.08999 * 110.77186 * 156.22003 * 26 25 10 45 45 H 1.09000 * 110.48440 * 203.40897 * 27 26 25 46 46 H 1.08996 * 110.48491 * 80.76331 * 27 26 25 47 47 H 1.09002 * 110.03013 * 359.95044 * 28 10 9 48 48 H 1.08991 * 110.03057 * 121.37771 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7648 5 6 2.2363 -1.1210 0.7652 6 1 3.1713 -0.8750 1.2688 7 6 1.3719 -2.1405 1.4611 8 8 0.1637 -2.0522 1.4027 9 7 1.9413 -3.1504 2.1482 10 6 1.1056 -4.0764 2.9166 11 6 0.2076 -4.8780 1.9722 12 7 1.0320 -5.5359 0.9554 13 6 0.4654 -6.3822 0.0727 14 8 -0.7269 -6.5987 0.1197 15 6 1.3136 -7.0593 -0.9728 16 16 0.2703 -8.1244 -1.9990 17 6 1.4832 -8.7698 -3.1021 18 1 2.5153 -8.4658 -3.0078 19 6 1.1116 -9.6650 -4.0955 20 7 -0.1469 -10.0323 -4.2133 21 14 2.3974 -10.3488 -5.2654 22 1 3.7276 -9.7836 -4.9241 23 1 2.4423 -11.8279 -5.1420 24 1 2.0448 -9.9789 -6.6596 25 6 1.9944 -5.0322 3.7389 26 6 2.0707 -4.3698 5.1378 27 6 0.6408 -3.8054 5.3279 28 6 0.2455 -3.2963 3.9263 29 1 -0.3634 0.0774 1.0248 30 1 -0.3633 0.8488 -0.5794 31 1 -0.3634 -0.9261 -0.4454 32 1 3.1724 -0.8759 -1.2678 33 1 1.6126 -1.8596 -1.2684 34 1 2.9046 -3.2641 2.1341 35 1 -0.5006 -4.2064 1.4869 36 1 -0.3374 -5.6313 2.5412 37 1 1.9856 -5.3624 0.9176 38 1 2.0797 -7.6618 -0.4848 39 1 1.7893 -6.3047 -1.5994 40 1 -0.4067 -10.6577 -4.9079 41 1 1.5330 -6.0174 3.8081 42 1 2.9876 -5.1054 3.2960 43 1 2.8071 -3.5663 5.1443 44 1 2.2986 -5.1105 5.9043 45 1 0.6470 -2.9840 6.0443 46 1 -0.0396 -4.5921 5.6538 47 1 0.4505 -2.2288 3.8452 48 1 -0.8116 -3.4888 3.7435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582571258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -61.067943 kcal Electronic energy + Delta-G solvation = -27934.668517 eV Core-core repulsion = 24115.977930 eV Total energy + Delta-G solvation = -3818.690587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97659 -39.23396 -38.40603 -36.47402 -34.42758 -33.50247 -32.41716 -30.30648 -29.17745 -28.85785 -28.14012 -25.51984 -24.73298 -24.13462 -21.50510 -21.34867 -20.25621 -20.08637 -19.56278 -17.86203 -17.32715 -16.77374 -16.36234 -15.99897 -15.43269 -15.10446 -15.05712 -14.79685 -14.68617 -14.44490 -13.95148 -13.85056 -13.47469 -13.23796 -13.07550 -12.80121 -12.68121 -12.60968 -12.49067 -12.07519 -11.78121 -11.69296 -11.58812 -11.45936 -11.38458 -11.16236 -11.06480 -11.00625 -10.89149 -10.74768 -10.49486 -10.30666 -9.79813 -9.62680 -9.39157 -9.24577 -9.06587 -8.73378 -8.20508 -6.47939 -6.20492 -3.90698 2.33248 2.80746 3.09517 3.17701 3.21958 3.29170 3.34439 3.55195 3.76271 4.09540 4.21372 4.25312 4.37512 4.45281 4.51671 4.59046 4.81641 4.89639 5.06904 5.11877 5.14575 5.15441 5.18965 5.24665 5.34179 5.40044 5.45730 5.55535 5.57232 5.60790 5.67322 5.73026 5.73735 5.78244 5.85519 5.90081 5.91071 5.94835 5.99578 6.07096 6.14868 6.32369 6.42850 6.69616 7.28507 7.60645 7.77370 8.08613 8.36353 8.69090 9.24752 10.86960 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.002839 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.816801 B = 9861.197580 C =11218.865498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.151 4.151 5 C -0.197 4.197 6 H 0.120 0.880 7 C 0.545 3.455 8 O -0.520 6.520 9 N -0.722 5.722 10 C 0.167 3.833 11 C 0.116 3.884 12 N -0.732 5.732 13 C 0.530 3.470 14 O -0.517 6.517 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.116 4.116 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.398 0.602 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.393 0.607 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.268 0.732 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.452 19.385 17.996 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 H 0.127 0.873 4 C -0.188 4.188 5 C -0.218 4.218 6 H 0.138 0.862 7 C 0.332 3.668 8 O -0.396 6.396 9 N -0.375 5.375 10 C 0.080 3.920 11 C -0.009 4.009 12 N -0.387 5.387 13 C 0.316 3.684 14 O -0.391 6.391 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.164 4.164 28 C -0.155 4.155 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.411 18.983 17.955 26.904 hybrid contribution 3.358 -0.187 -0.825 3.463 sum 9.768 18.796 17.130 27.243 Atomic orbital electron populations 1.21372 0.91330 1.01756 1.02482 1.22371 0.96697 0.93343 1.01221 0.87343 1.23130 1.03182 1.01974 0.90531 1.22304 1.02004 1.01409 0.96079 0.86235 1.19631 0.88264 0.80989 0.77902 1.90725 1.14361 1.74416 1.60055 1.46186 1.10307 1.29847 1.51113 1.21251 0.91117 0.88842 0.90753 1.21791 0.93558 0.95809 0.89776 1.45854 1.11515 1.47478 1.33819 1.20273 0.88536 0.78306 0.81275 1.90705 1.15368 1.61614 1.71433 1.23512 1.03483 1.03314 0.99924 1.85428 1.11531 1.52052 1.34280 1.22907 0.95795 1.31344 1.18270 0.90947 1.24992 0.96003 0.95610 0.97011 1.70032 1.15739 1.31870 1.32607 0.86120 0.80672 0.78680 0.80033 1.19645 1.20574 1.20572 1.22727 0.99587 0.98895 0.95215 1.22511 0.97203 0.99879 0.96453 1.22409 0.96615 1.00605 0.96763 1.22390 1.00196 1.00000 0.92905 0.91454 0.93334 0.91476 0.87868 0.87894 0.76698 0.89949 0.90862 0.77390 0.89409 0.89496 0.92248 0.89464 0.90815 0.91479 0.91158 0.91527 0.91218 0.90863 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.43 37.16 0.31 -0.86 16 2 C -0.12 -1.00 6.41 -90.58 -0.58 -1.58 16 3 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.15 -1.27 9.88 -26.69 -0.26 -1.53 16 5 C -0.20 -1.57 6.19 -91.77 -0.57 -2.14 16 6 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 7 C 0.55 5.53 6.64 -10.99 -0.07 5.46 16 8 O -0.52 -7.04 10.38 5.56 0.06 -6.98 16 9 N -0.72 -5.67 4.46 -46.57 -0.21 -5.87 16 10 C 0.17 1.49 0.57 -130.70 -0.07 1.41 16 11 C 0.12 1.51 4.05 -4.04 -0.02 1.49 16 12 N -0.73 -10.21 5.23 -60.29 -0.32 -10.53 16 13 C 0.53 10.29 7.85 -10.99 -0.09 10.20 16 14 O -0.52 -12.31 15.86 5.56 0.09 -12.22 16 15 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 21 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.13 -0.89 5.78 -25.03 -0.14 -1.03 16 26 C -0.12 -0.74 6.91 -24.69 -0.17 -0.91 16 27 C -0.13 -0.88 6.83 -25.07 -0.17 -1.06 16 28 C -0.12 -1.05 5.22 -25.61 -0.13 -1.18 16 29 H 0.07 0.76 7.26 -51.93 -0.38 0.39 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.86 7.02 -51.93 -0.36 0.49 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.40 2.09 8.23 -40.82 -0.34 1.76 16 35 H 0.08 1.33 6.58 -51.93 -0.34 0.99 16 36 H 0.07 1.01 8.02 -51.93 -0.42 0.60 16 37 H 0.39 4.32 7.99 -40.82 -0.33 4.00 16 38 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.09 0.71 7.77 -51.93 -0.40 0.30 16 42 H 0.07 0.42 7.70 -51.93 -0.40 0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.72 6.99 -51.93 -0.36 0.36 16 48 H 0.08 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -35.80 397.32 -10.36 -46.16 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.92 Total: 4.17 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.55 Total: -7.70 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.21 Total: -42.04 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.15 Total: -19.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.80 -10.36 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582571258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.907 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds