Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.56769 * 2 1 4 4 C 1.53076 * 117.51281 * 214.28658 * 2 1 3 5 5 C 1.53002 * 59.98592 * 252.52850 * 4 2 1 6 6 H 1.09003 * 117.49365 * 252.49839 * 5 4 2 7 7 C 1.50695 * 117.49885 * 107.50376 * 5 4 2 8 8 O 1.21279 * 119.99998 * 291.25349 * 7 5 4 9 9 N 1.34772 * 120.00138 * 111.25043 * 7 5 4 10 10 C 1.46498 * 120.00193 * 174.90907 * 9 7 5 11 11 C 1.53004 * 110.01547 * 65.20585 * 10 9 7 12 12 N 1.46498 * 109.47307 * 54.43151 * 11 10 9 13 13 C 1.34777 * 120.00025 * 174.95691 * 12 11 10 14 14 O 1.21280 * 119.99928 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99787 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.46938 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00177 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00198 * 359.72236 * 17 16 15 19 19 C 1.38792 * 120.00390 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00463 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47315 * 119.99739 * 21 19 17 24 24 H 1.48496 * 109.47430 * 240.00117 * 21 19 17 25 25 C 1.54264 * 110.03377 * 186.59380 * 10 9 7 26 26 C 1.54967 * 104.16316 * 95.75534 * 25 10 9 27 27 C 1.54896 * 102.77273 * 37.88760 * 26 25 10 28 28 C 1.53876 * 110.03404 * 303.81390 * 10 9 7 29 29 H 1.09005 * 109.47355 * 274.31964 * 1 2 3 30 30 H 1.09005 * 109.46624 * 34.31627 * 1 2 3 31 31 H 1.08997 * 109.47576 * 154.31661 * 1 2 3 32 32 H 1.09003 * 117.49145 * 145.04105 * 4 2 1 33 33 H 1.09000 * 117.53228 * 0.02562 * 4 2 1 34 34 H 0.97004 * 119.99732 * 354.91262 * 9 7 5 35 35 H 1.09004 * 109.46935 * 294.43358 * 11 10 9 36 36 H 1.08999 * 109.46869 * 174.43120 * 11 10 9 37 37 H 0.97002 * 119.99737 * 354.95910 * 12 11 10 38 38 H 1.08995 * 109.47162 * 60.00142 * 15 13 12 39 39 H 1.09003 * 109.47015 * 300.00119 * 15 13 12 40 40 H 0.97007 * 120.00308 * 179.97438 * 20 19 17 41 41 H 1.09004 * 110.48945 * 214.40414 * 25 10 9 42 42 H 1.09000 * 110.48756 * 337.05079 * 25 10 9 43 43 H 1.08997 * 110.71960 * 279.57668 * 26 25 10 44 44 H 1.08999 * 110.77186 * 156.22003 * 26 25 10 45 45 H 1.09000 * 110.48440 * 203.40897 * 27 26 25 46 46 H 1.08996 * 110.48491 * 80.76331 * 27 26 25 47 47 H 1.09002 * 110.03013 * 359.95044 * 28 10 9 48 48 H 1.08991 * 110.03057 * 121.37771 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7648 5 6 2.2363 -1.1210 0.7652 6 1 3.1713 -0.8750 1.2688 7 6 1.3719 -2.1405 1.4611 8 8 0.1637 -2.0522 1.4027 9 7 1.9413 -3.1504 2.1482 10 6 1.1056 -4.0764 2.9166 11 6 0.2076 -4.8780 1.9722 12 7 1.0320 -5.5359 0.9554 13 6 0.4654 -6.3822 0.0727 14 8 -0.7269 -6.5987 0.1197 15 6 1.3136 -7.0593 -0.9728 16 16 0.2703 -8.1244 -1.9990 17 6 1.4832 -8.7698 -3.1021 18 1 2.5153 -8.4658 -3.0078 19 6 1.1116 -9.6650 -4.0955 20 7 -0.1469 -10.0323 -4.2133 21 14 2.3974 -10.3488 -5.2654 22 1 3.7276 -9.7836 -4.9241 23 1 2.4423 -11.8279 -5.1420 24 1 2.0448 -9.9789 -6.6596 25 6 1.9944 -5.0322 3.7389 26 6 2.0707 -4.3698 5.1378 27 6 0.6408 -3.8054 5.3279 28 6 0.2455 -3.2963 3.9263 29 1 -0.3634 0.0774 1.0248 30 1 -0.3633 0.8488 -0.5794 31 1 -0.3634 -0.9261 -0.4454 32 1 3.1724 -0.8759 -1.2678 33 1 1.6126 -1.8596 -1.2684 34 1 2.9046 -3.2641 2.1341 35 1 -0.5006 -4.2064 1.4869 36 1 -0.3374 -5.6313 2.5412 37 1 1.9856 -5.3624 0.9176 38 1 2.0797 -7.6618 -0.4848 39 1 1.7893 -6.3047 -1.5994 40 1 -0.4067 -10.6577 -4.9079 41 1 1.5330 -6.0174 3.8081 42 1 2.9876 -5.1054 3.2960 43 1 2.8071 -3.5663 5.1443 44 1 2.2986 -5.1105 5.9043 45 1 0.6470 -2.9840 6.0443 46 1 -0.0396 -4.5921 5.6538 47 1 0.4505 -2.2288 3.8452 48 1 -0.8116 -3.4888 3.7435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582571258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -85.755671 kcal Electronic energy + Delta-G solvation = -27935.739057 eV Core-core repulsion = 24115.977930 eV Total energy + Delta-G solvation = -3819.761127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82712 -40.50697 -39.39870 -37.22197 -35.62122 -34.59362 -34.44235 -31.66745 -29.92433 -29.78127 -29.11788 -27.68356 -25.73216 -24.90754 -22.28891 -22.06754 -21.51901 -20.86087 -20.44278 -19.79598 -18.10653 -17.89109 -17.72132 -16.99681 -16.88874 -16.53136 -16.33815 -15.89145 -15.61331 -15.53957 -15.32008 -14.97346 -14.63671 -14.45642 -14.11485 -14.04020 -13.93654 -13.55802 -13.32489 -13.24825 -13.16925 -12.91572 -12.87605 -12.59310 -12.40125 -12.28898 -12.08823 -11.98717 -11.91170 -11.71874 -11.45962 -11.18146 -11.16559 -11.01336 -11.00558 -10.51130 -10.28283 -10.16056 -10.00716 -8.68596 -8.35175 -6.14021 1.25400 1.41568 1.46230 1.54907 1.57486 1.58420 2.06095 2.26213 2.31292 2.87409 2.99114 3.30495 3.39528 3.53174 3.69398 3.75205 3.86152 3.92522 3.96813 4.17482 4.22944 4.27453 4.35699 4.45713 4.47662 4.48768 4.52631 4.63503 4.72603 4.81108 4.84289 4.85264 4.92106 4.97023 5.04291 5.06034 5.07271 5.17497 5.22086 5.25381 5.35470 5.41274 5.46322 5.50920 5.65050 6.19393 6.45180 6.62253 7.05890 7.21026 7.35430 8.74414 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.002839 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.816801 B = 9861.197580 C =11218.865498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 H 0.136 0.864 4 C -0.151 4.151 5 C -0.187 4.187 6 H 0.157 0.843 7 C 0.535 3.465 8 O -0.562 6.562 9 N -0.707 5.707 10 C 0.176 3.824 11 C 0.119 3.881 12 N -0.702 5.702 13 C 0.530 3.470 14 O -0.569 6.569 15 C -0.125 4.125 16 S -0.155 6.155 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.124 4.124 28 C -0.114 4.114 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.417 0.583 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.412 0.588 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.040 20.411 18.938 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 H 0.154 0.846 4 C -0.188 4.188 5 C -0.208 4.208 6 H 0.174 0.826 7 C 0.323 3.677 8 O -0.440 6.440 9 N -0.361 5.361 10 C 0.089 3.911 11 C -0.006 4.006 12 N -0.356 5.356 13 C 0.316 3.684 14 O -0.448 6.448 15 C -0.276 4.276 16 S 0.072 5.928 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.823 3.177 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.161 4.161 26 C -0.151 4.151 27 C -0.162 4.162 28 C -0.153 4.153 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.081 20.037 18.936 29.713 hybrid contribution 1.846 -0.413 -1.039 2.158 sum 12.927 19.624 17.898 29.539 Atomic orbital electron populations 1.21260 0.93517 1.00388 1.01368 1.22454 0.95123 0.94857 1.01851 0.84592 1.23112 1.03705 1.01147 0.90848 1.22411 1.02622 1.00080 0.95664 0.82552 1.20188 0.88069 0.81643 0.77792 1.90735 1.16400 1.75386 1.61464 1.46050 1.11119 1.28773 1.50165 1.21124 0.91182 0.88989 0.89824 1.21803 0.93994 0.95186 0.89602 1.45531 1.12478 1.45274 1.32269 1.20165 0.87678 0.78817 0.81725 1.90695 1.17494 1.63668 1.72901 1.23329 1.02396 1.02605 0.99290 1.85671 1.15665 1.54640 1.36775 1.23231 0.95985 1.31564 1.18432 0.89751 1.26165 0.98427 0.95759 0.98925 1.70202 1.18326 1.32728 1.33643 0.84873 0.77921 0.77889 0.77055 1.17787 1.19899 1.20031 1.22735 0.99989 0.97675 0.95677 1.22491 0.96433 1.00410 0.95787 1.22408 0.97574 1.00900 0.95275 1.22329 0.98877 0.99583 0.94497 0.92876 0.92245 0.94820 0.85219 0.90911 0.74525 0.93420 0.91880 0.75090 0.86814 0.87549 0.92010 0.90439 0.88358 0.89989 0.89959 0.90521 0.91500 0.91601 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.43 71.98 0.61 -1.74 16 2 C -0.12 -1.92 6.41 -10.77 -0.07 -1.99 16 3 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.15 -2.28 9.88 30.62 0.30 -1.97 16 5 C -0.19 -2.52 6.19 -11.54 -0.07 -2.59 16 6 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 7 C 0.54 10.40 6.64 87.66 0.58 10.98 16 8 O -0.56 -15.97 10.38 -3.03 -0.03 -16.00 16 9 N -0.71 -9.62 4.46 -419.66 -1.87 -11.49 16 10 C 0.18 2.96 0.57 4.33 0.00 2.96 16 11 C 0.12 3.20 4.05 86.38 0.35 3.55 16 12 N -0.70 -19.13 5.23 -463.06 -2.42 -21.55 16 13 C 0.53 20.80 7.85 87.66 0.69 21.48 16 14 O -0.57 -28.40 15.86 -3.03 -0.05 -28.45 16 15 C -0.12 -5.07 6.16 71.24 0.44 -4.63 16 16 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 17 C -0.54 -31.28 9.50 67.95 0.65 -30.64 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.68 5.49 84.86 0.47 1.14 16 20 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16 21 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 22 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C -0.12 -1.38 5.78 31.70 0.18 -1.20 16 26 C -0.11 -1.00 6.91 31.91 0.22 -0.78 16 27 C -0.12 -1.54 6.83 31.67 0.22 -1.33 16 28 C -0.11 -2.05 5.22 31.32 0.16 -1.89 16 29 H 0.05 1.28 7.26 -2.38 -0.02 1.26 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.03 0.93 7.02 -2.39 -0.02 0.92 16 32 H 0.13 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 34 H 0.42 2.71 8.23 -92.71 -0.76 1.95 16 35 H 0.05 1.66 6.58 -2.39 -0.02 1.65 16 36 H 0.06 1.84 8.02 -2.39 -0.02 1.82 16 37 H 0.41 8.04 7.99 -92.71 -0.74 7.30 16 38 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 39 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 40 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 41 H 0.08 1.09 7.77 -2.39 -0.02 1.07 16 42 H 0.10 0.66 7.70 -2.39 -0.02 0.64 16 43 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.29 6.99 -2.39 -0.02 1.28 16 48 H 0.05 1.19 7.67 -2.39 -0.02 1.17 16 Total: -1.00 -83.98 397.32 0.97 -83.01 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.53 Total: 23.80 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 4.72 Total: -8.64 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -4.01 Total: -89.45 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.08 Total: -44.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -83.98 0.97 -83.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582571258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.744 kcal (2) G-P(sol) polarization free energy of solvation -83.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds