Wall clock time and date at job start Sat Apr 11 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.27410 * 2 1 4 4 C 1.54945 * 110.30858 * 122.09119 * 2 1 3 5 5 C 1.55304 * 100.94483 * 155.36495 * 4 2 1 6 6 C 1.54391 * 102.24824 * 325.86312 * 5 4 2 7 7 H 1.08991 * 109.83318 * 261.75340 * 6 5 4 8 8 C 1.53000 * 109.82761 * 140.86953 * 6 5 4 9 9 N 1.46901 * 109.46769 * 180.18522 * 8 6 5 10 10 C 1.48554 * 111.00208 * 285.42169 * 9 8 6 11 11 C 1.54378 * 104.59426 * 200.96461 * 10 9 8 12 12 H 1.09004 * 118.15547 * 244.14350 * 11 10 9 13 13 C 1.54258 * 105.06502 * 23.85028 * 11 10 9 14 14 H 1.09005 * 121.78908 * 223.01391 * 13 11 10 15 15 C 1.48562 * 110.99567 * 170.00215 * 9 8 6 16 16 C 1.52997 * 59.72884 * 114.09724 * 13 11 10 17 17 H 1.08999 * 117.44729 * 252.36007 * 16 13 11 18 18 N 1.46497 * 117.44306 * 107.64750 * 16 13 11 19 19 C 1.34773 * 120.00261 * 155.00238 * 18 16 13 20 20 O 1.21290 * 119.99919 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00311 * 180.02562 * 19 18 16 22 22 S 1.81002 * 109.47237 * 179.97438 * 21 19 18 23 23 C 1.76199 * 99.99963 * 179.97438 * 22 21 19 24 24 H 1.07995 * 120.00054 * 0.02562 * 23 22 21 25 25 C 1.38807 * 119.99833 * 179.97438 * 23 22 21 26 26 N 1.31628 * 119.99949 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 119.99645 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47183 * 90.00548 * 27 25 23 29 29 H 1.48511 * 109.47067 * 209.99926 * 27 25 23 30 30 H 1.48494 * 109.47675 * 330.00054 * 27 25 23 31 31 O 1.43241 * 107.66348 * 21.31197 * 6 5 4 32 32 H 1.08996 * 109.47254 * 297.91164 * 1 2 3 33 33 H 1.09001 * 109.47018 * 57.91225 * 1 2 3 34 34 H 1.09000 * 109.46798 * 177.90799 * 1 2 3 35 35 H 1.09001 * 111.12894 * 37.44043 * 4 2 1 36 36 H 1.09008 * 111.16042 * 273.29350 * 4 2 1 37 37 H 1.08995 * 110.85014 * 207.68235 * 5 4 2 38 38 H 1.08994 * 110.85138 * 84.05121 * 5 4 2 39 39 H 1.09002 * 109.47398 * 300.18817 * 8 6 5 40 40 H 1.09001 * 109.47194 * 60.18998 * 8 6 5 41 41 H 1.09002 * 110.41148 * 319.73608 * 10 9 8 42 42 H 1.08997 * 110.41369 * 82.18011 * 10 9 8 43 43 H 1.09005 * 110.41429 * 277.81689 * 15 9 8 44 44 H 1.08997 * 110.41452 * 40.26202 * 15 9 8 45 45 H 0.97004 * 120.00098 * 335.00205 * 18 16 13 46 46 H 1.09004 * 109.46926 * 299.99651 * 21 19 18 47 47 H 1.08999 * 109.47280 * 59.99989 * 21 19 18 48 48 H 0.96999 * 119.99791 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0678 -0.7720 1.2311 5 6 3.4700 -1.2018 0.7202 6 6 3.2113 -1.4427 -0.7827 7 1 3.0641 -2.5068 -0.9668 8 6 4.3992 -0.9339 -1.6019 9 7 4.1430 -1.1628 -3.0301 10 6 4.3004 -2.5989 -3.3758 11 6 4.5417 -2.6078 -4.9006 12 1 3.7987 -3.0899 -5.5361 13 6 5.1040 -1.2087 -5.2257 14 1 4.7692 -0.6432 -6.0954 15 6 5.1553 -0.4721 -3.8699 16 6 5.9778 -2.4517 -5.4047 17 1 6.7822 -2.6081 -4.6860 18 7 6.2632 -2.8848 -6.7748 19 6 7.3713 -3.6059 -7.0366 20 8 8.1325 -3.8959 -6.1380 21 6 7.6653 -4.0508 -8.4461 22 16 9.2113 -4.9917 -8.4718 23 6 9.3072 -5.3759 -10.1887 24 1 8.5346 -5.0356 -10.8621 25 6 10.3764 -6.1151 -10.6758 26 7 11.3183 -6.5294 -9.8550 27 14 10.4783 -6.5218 -12.4960 28 1 11.2209 -5.4471 -13.2025 29 1 11.1879 -7.8140 -12.6756 30 1 9.1076 -6.6276 -13.0573 31 8 2.0282 -0.7193 -1.1415 32 1 -0.3633 0.4810 0.9081 33 1 -0.3633 0.5459 -0.8707 34 1 -0.3633 -1.0270 -0.0375 35 1 1.4471 -1.6403 1.4523 36 1 2.1496 -0.1190 2.1001 37 1 3.7967 -2.1194 1.2093 38 1 4.1974 -0.4033 0.8654 39 1 4.5335 0.1330 -1.4232 40 1 5.3013 -1.4685 -1.3044 41 1 5.1572 -3.0241 -2.8530 42 1 3.3927 -3.1506 -3.1312 43 1 4.8911 0.5778 -3.9975 44 1 6.1457 -0.5643 -3.4244 45 1 5.6547 -2.6525 -7.4937 46 1 6.8508 -4.6797 -8.8059 47 1 7.7615 -3.1769 -9.0904 48 1 12.0652 -7.0463 -10.1953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662021226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:40 Heat of formation + Delta-G solvation = -46.949559 kcal Electronic energy + Delta-G solvation = -26272.877027 eV Core-core repulsion = 22454.798660 eV Total energy + Delta-G solvation = -3818.078368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60209 -39.79489 -38.69155 -35.46630 -33.15442 -32.59718 -32.43957 -31.68984 -29.24706 -28.71283 -27.83529 -25.51698 -24.81186 -22.55182 -21.91838 -21.13241 -20.88064 -20.38716 -20.20861 -17.85977 -17.33471 -16.98250 -16.37629 -16.25123 -15.75454 -14.99495 -14.91059 -14.81228 -14.62382 -14.32701 -14.10258 -13.75035 -13.58597 -13.33112 -13.06709 -13.00686 -12.79221 -12.71120 -12.51877 -12.32877 -12.18785 -12.03249 -11.78593 -11.55772 -11.27922 -11.20956 -11.15795 -11.07203 -11.03714 -10.88609 -10.77824 -10.21306 -9.82871 -9.77396 -9.49386 -9.07746 -8.71041 -8.65295 -8.26015 -6.51803 -6.22844 -3.93681 2.86448 2.88853 3.21956 3.24823 3.29552 3.34664 3.55771 3.60231 3.79077 4.06551 4.19251 4.28765 4.32422 4.45856 4.55257 4.66985 4.71314 4.80461 4.89758 4.90252 4.97550 4.99253 5.10862 5.11616 5.12547 5.16858 5.25541 5.26188 5.28627 5.36672 5.39172 5.49094 5.53560 5.63551 5.64958 5.76470 5.77522 5.80018 5.85464 5.90978 5.97617 6.11112 6.49740 6.56051 6.66555 6.89834 7.58500 7.62552 8.34136 8.52955 9.22567 10.84610 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.041591 B = 0.001548 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.060202 B =18089.168491 C =18353.814111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.153 4.153 6 C 0.089 3.911 7 H 0.078 0.922 8 C 0.034 3.966 9 N -0.498 5.498 10 C 0.063 3.937 11 C -0.175 4.175 12 H 0.119 0.881 13 C -0.173 4.173 14 H 0.119 0.881 15 C 0.064 3.936 16 C 0.124 3.876 17 H 0.133 0.867 18 N -0.709 5.709 19 C 0.538 3.462 20 O -0.514 6.514 21 C -0.153 4.153 22 S -0.059 6.059 23 C -0.537 4.537 24 H 0.073 0.927 25 C 0.074 3.926 26 N -0.867 5.867 27 Si 0.919 3.081 28 H -0.277 1.277 29 H -0.282 1.282 30 H -0.272 1.272 31 O -0.354 6.354 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.048 0.952 45 H 0.401 0.599 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.783 14.505 20.608 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 H 0.085 0.915 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.031 3.969 7 H 0.096 0.904 8 C -0.095 4.095 9 N -0.221 5.221 10 C -0.065 4.065 11 C -0.196 4.196 12 H 0.137 0.863 13 C -0.193 4.193 14 H 0.137 0.863 15 C -0.064 4.064 16 C 0.016 3.984 17 H 0.150 0.850 18 N -0.360 5.360 19 C 0.324 3.676 20 O -0.388 6.388 21 C -0.304 4.304 22 S 0.168 5.832 23 C -0.685 4.685 24 H 0.091 0.909 25 C -0.135 4.135 26 N -0.503 5.503 27 Si 0.745 3.255 28 H -0.203 1.203 29 H -0.207 1.207 30 H -0.197 1.197 31 O -0.273 6.273 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.235 0.765 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.952 14.104 21.819 32.758 hybrid contribution -0.262 -0.044 -2.209 2.225 sum -20.214 14.060 19.610 31.478 Atomic orbital electron populations 1.21866 0.93840 1.02812 1.02224 1.22992 0.94874 0.95623 0.85162 0.91503 1.23317 0.96110 1.00959 0.98555 1.23166 0.97945 1.02815 0.95173 1.22651 0.85573 0.96311 0.92372 0.90394 1.22708 0.96282 1.01792 0.88728 1.65551 1.45881 1.06856 1.03827 1.22641 1.01045 0.89914 0.92893 1.23954 0.98317 1.00865 0.96425 0.86316 1.23865 1.05757 0.90385 0.99314 0.86256 1.22588 0.93949 0.98790 0.91043 1.21637 0.93538 0.96901 0.86317 0.84985 1.45365 1.26113 1.56478 1.08033 1.20360 0.79683 0.76530 0.91000 1.90700 1.46865 1.54080 1.47143 1.23534 1.07221 1.04812 0.94801 1.85403 1.19883 1.65983 1.11950 1.22872 1.11983 1.40451 0.93167 0.90876 1.24992 0.94653 0.94926 0.98971 1.70016 1.10566 1.34786 1.34906 0.86160 0.78374 0.77957 0.82962 1.20256 1.20734 1.19686 1.88633 1.41315 1.64358 1.33015 0.91505 0.91841 0.91962 0.90305 0.90068 0.89920 0.90347 0.90321 0.93320 0.93353 0.89457 0.89425 0.93406 0.76452 0.89024 0.89024 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.62 37.16 0.36 -0.53 16 2 C 0.07 0.49 4.08 -25.70 -0.10 0.39 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.15 -0.79 6.57 -24.48 -0.16 -0.95 16 5 C -0.15 -0.84 6.54 -24.78 -0.16 -1.00 16 6 C 0.09 0.70 3.58 -26.00 -0.09 0.60 16 7 H 0.08 0.64 7.46 -51.93 -0.39 0.25 16 8 C 0.03 0.27 4.38 -3.82 -0.02 0.26 16 9 N -0.50 -4.89 5.24 -229.97 -1.21 -6.09 16 10 C 0.06 0.62 5.72 -2.19 -0.01 0.61 16 11 C -0.17 -1.85 7.05 -89.24 -0.63 -2.48 16 12 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.17 -1.75 7.05 -89.24 -0.63 -2.38 16 14 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 15 C 0.06 0.61 6.26 -2.18 -0.01 0.59 16 16 C 0.12 1.54 5.98 -67.93 -0.41 1.13 16 17 H 0.13 1.90 7.40 -51.93 -0.38 1.51 16 18 N -0.71 -9.65 5.56 -53.81 -0.30 -9.95 16 19 C 0.54 10.02 7.85 -10.99 -0.09 9.93 16 20 O -0.51 -11.64 15.43 5.55 0.09 -11.56 16 21 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 22 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 23 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 24 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 25 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 26 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 27 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 31 O -0.35 -3.45 10.62 -35.23 -0.37 -3.82 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.39 7.85 -51.93 -0.41 -0.02 16 39 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.05 0.37 7.77 -51.93 -0.40 -0.03 16 41 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 42 H 0.09 0.83 7.84 -51.93 -0.41 0.43 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.45 8.00 -51.93 -0.42 0.04 16 45 H 0.40 4.27 8.83 -40.82 -0.36 3.91 16 46 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 47 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -34.45 402.05 -11.97 -46.42 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.20 Total: 1.38 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.54 Total: -9.61 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.77 Total: -41.42 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.29 Total: -15.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.45 -11.97 -46.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662021226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.526 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds