Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.27410 * 2 1 4 4 C 1.54945 * 110.30858 * 122.09119 * 2 1 3 5 5 C 1.55304 * 100.94483 * 155.36495 * 4 2 1 6 6 C 1.54391 * 102.24824 * 325.86312 * 5 4 2 7 7 H 1.08991 * 109.83318 * 261.75340 * 6 5 4 8 8 C 1.53000 * 109.82761 * 140.86953 * 6 5 4 9 9 N 1.46901 * 109.46769 * 180.18522 * 8 6 5 10 10 C 1.48554 * 111.00208 * 285.42169 * 9 8 6 11 11 C 1.54378 * 104.59426 * 200.96461 * 10 9 8 12 12 H 1.09004 * 118.15547 * 244.14350 * 11 10 9 13 13 C 1.54258 * 105.06502 * 23.85028 * 11 10 9 14 14 H 1.09005 * 121.78908 * 223.01391 * 13 11 10 15 15 C 1.48562 * 110.99567 * 170.00215 * 9 8 6 16 16 C 1.52997 * 59.72884 * 114.09724 * 13 11 10 17 17 H 1.08999 * 117.44729 * 252.36007 * 16 13 11 18 18 N 1.46497 * 117.44306 * 107.64750 * 16 13 11 19 19 C 1.34773 * 120.00261 * 155.00238 * 18 16 13 20 20 O 1.21290 * 119.99919 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00311 * 180.02562 * 19 18 16 22 22 S 1.81002 * 109.47237 * 179.97438 * 21 19 18 23 23 C 1.76199 * 99.99963 * 179.97438 * 22 21 19 24 24 H 1.07995 * 120.00054 * 0.02562 * 23 22 21 25 25 C 1.38807 * 119.99833 * 179.97438 * 23 22 21 26 26 N 1.31628 * 119.99949 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 119.99645 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47183 * 90.00548 * 27 25 23 29 29 H 1.48511 * 109.47067 * 209.99926 * 27 25 23 30 30 H 1.48494 * 109.47675 * 330.00054 * 27 25 23 31 31 O 1.43241 * 107.66348 * 21.31197 * 6 5 4 32 32 H 1.08996 * 109.47254 * 297.91164 * 1 2 3 33 33 H 1.09001 * 109.47018 * 57.91225 * 1 2 3 34 34 H 1.09000 * 109.46798 * 177.90799 * 1 2 3 35 35 H 1.09001 * 111.12894 * 37.44043 * 4 2 1 36 36 H 1.09008 * 111.16042 * 273.29350 * 4 2 1 37 37 H 1.08995 * 110.85014 * 207.68235 * 5 4 2 38 38 H 1.08994 * 110.85138 * 84.05121 * 5 4 2 39 39 H 1.09002 * 109.47398 * 300.18817 * 8 6 5 40 40 H 1.09001 * 109.47194 * 60.18998 * 8 6 5 41 41 H 1.09002 * 110.41148 * 319.73608 * 10 9 8 42 42 H 1.08997 * 110.41369 * 82.18011 * 10 9 8 43 43 H 1.09005 * 110.41429 * 277.81689 * 15 9 8 44 44 H 1.08997 * 110.41452 * 40.26202 * 15 9 8 45 45 H 0.97004 * 120.00098 * 335.00205 * 18 16 13 46 46 H 1.09004 * 109.46926 * 299.99651 * 21 19 18 47 47 H 1.08999 * 109.47280 * 59.99989 * 21 19 18 48 48 H 0.96999 * 119.99791 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0678 -0.7720 1.2311 5 6 3.4700 -1.2018 0.7202 6 6 3.2113 -1.4427 -0.7827 7 1 3.0641 -2.5068 -0.9668 8 6 4.3992 -0.9339 -1.6019 9 7 4.1430 -1.1628 -3.0301 10 6 4.3004 -2.5989 -3.3758 11 6 4.5417 -2.6078 -4.9006 12 1 3.7987 -3.0899 -5.5361 13 6 5.1040 -1.2087 -5.2257 14 1 4.7692 -0.6432 -6.0954 15 6 5.1553 -0.4721 -3.8699 16 6 5.9778 -2.4517 -5.4047 17 1 6.7822 -2.6081 -4.6860 18 7 6.2632 -2.8848 -6.7748 19 6 7.3713 -3.6059 -7.0366 20 8 8.1325 -3.8959 -6.1380 21 6 7.6653 -4.0508 -8.4461 22 16 9.2113 -4.9917 -8.4718 23 6 9.3072 -5.3759 -10.1887 24 1 8.5346 -5.0356 -10.8621 25 6 10.3764 -6.1151 -10.6758 26 7 11.3183 -6.5294 -9.8550 27 14 10.4783 -6.5218 -12.4960 28 1 11.2209 -5.4471 -13.2025 29 1 11.1879 -7.8140 -12.6756 30 1 9.1076 -6.6276 -13.0573 31 8 2.0282 -0.7193 -1.1415 32 1 -0.3633 0.4810 0.9081 33 1 -0.3633 0.5459 -0.8707 34 1 -0.3633 -1.0270 -0.0375 35 1 1.4471 -1.6403 1.4523 36 1 2.1496 -0.1190 2.1001 37 1 3.7967 -2.1194 1.2093 38 1 4.1974 -0.4033 0.8654 39 1 4.5335 0.1330 -1.4232 40 1 5.3013 -1.4685 -1.3044 41 1 5.1572 -3.0241 -2.8530 42 1 3.3927 -3.1506 -3.1312 43 1 4.8911 0.5778 -3.9975 44 1 6.1457 -0.5643 -3.4244 45 1 5.6547 -2.6525 -7.4937 46 1 6.8508 -4.6797 -8.8059 47 1 7.7615 -3.1769 -9.0904 48 1 12.0652 -7.0463 -10.1953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662021226.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = -71.193244 kcal Electronic energy + Delta-G solvation = -26273.928313 eV Core-core repulsion = 22454.798660 eV Total energy + Delta-G solvation = -3819.129653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49014 -40.56812 -39.89948 -36.43514 -34.59122 -34.19936 -33.13237 -32.42412 -30.65888 -29.50273 -28.56852 -27.66507 -25.50080 -23.33649 -22.43016 -22.02460 -21.88697 -21.44095 -20.94313 -19.82259 -18.08133 -17.96228 -17.74774 -16.88323 -16.85957 -16.61960 -16.42588 -16.02068 -15.66376 -15.28669 -14.93314 -14.82131 -14.55187 -14.36161 -14.18473 -13.94085 -13.78522 -13.63256 -13.42054 -13.23964 -13.17214 -12.90347 -12.89414 -12.61366 -12.54841 -12.52385 -12.36876 -11.91611 -11.80749 -11.74913 -11.67807 -11.63254 -11.14470 -11.13302 -10.99555 -10.39178 -10.29161 -9.84087 -9.41706 -8.67646 -8.35096 -6.13432 1.23540 1.42661 1.44957 1.46932 1.56193 2.06414 2.26934 2.63856 2.75873 2.99320 3.08605 3.28871 3.54926 3.61420 3.61634 3.75416 3.85692 3.86630 3.88246 4.11414 4.18263 4.22042 4.28499 4.30475 4.34587 4.44487 4.47751 4.48820 4.56519 4.59477 4.64710 4.77121 4.82211 4.86512 4.87403 4.91230 5.06013 5.06558 5.10555 5.14162 5.28524 5.34437 5.41802 5.43399 5.74764 5.95922 6.19565 6.31236 6.41586 7.06331 7.16121 8.74168 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.041591 B = 0.001548 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.060202 B =18089.168491 C =18353.814111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.069 0.931 4 C -0.146 4.146 5 C -0.149 4.149 6 C 0.087 3.913 7 H 0.070 0.930 8 C 0.034 3.966 9 N -0.506 5.506 10 C 0.064 3.936 11 C -0.167 4.167 12 H 0.129 0.871 13 C -0.153 4.153 14 H 0.137 0.863 15 C 0.062 3.938 16 C 0.100 3.900 17 H 0.108 0.892 18 N -0.683 5.683 19 C 0.540 3.460 20 O -0.563 6.563 21 C -0.129 4.129 22 S -0.150 6.150 23 C -0.548 4.548 24 H 0.084 0.916 25 C 0.014 3.986 26 N -0.911 5.911 27 Si 0.999 3.001 28 H -0.268 1.268 29 H -0.278 1.278 30 H -0.258 1.258 31 O -0.381 6.381 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.045 0.955 45 H 0.419 0.581 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.847 15.765 20.122 34.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 H 0.087 0.913 4 C -0.183 4.183 5 C -0.187 4.187 6 C 0.029 3.971 7 H 0.088 0.912 8 C -0.094 4.094 9 N -0.229 5.229 10 C -0.064 4.064 11 C -0.187 4.187 12 H 0.147 0.853 13 C -0.173 4.173 14 H 0.155 0.845 15 C -0.065 4.065 16 C -0.007 4.007 17 H 0.126 0.874 18 N -0.334 5.334 19 C 0.327 3.673 20 O -0.441 6.441 21 C -0.280 4.280 22 S 0.077 5.923 23 C -0.696 4.696 24 H 0.102 0.898 25 C -0.191 4.191 26 N -0.548 5.548 27 Si 0.821 3.179 28 H -0.193 1.193 29 H -0.203 1.203 30 H -0.182 1.182 31 O -0.301 6.301 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.257 0.743 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.079 15.403 21.338 34.351 hybrid contribution 0.266 -0.342 -1.953 2.001 sum -21.813 15.061 19.384 32.839 Atomic orbital electron populations 1.21865 0.93331 1.02508 1.02794 1.23173 0.95368 0.95707 0.85234 0.91340 1.23302 0.95594 1.01064 0.98354 1.23166 0.98437 1.03578 0.93531 1.22686 0.84986 0.95675 0.93799 0.91206 1.22745 0.96702 1.02084 0.87869 1.65579 1.45988 1.06519 1.04844 1.22633 1.00987 0.90319 0.92439 1.23987 0.96545 1.01193 0.96985 0.85323 1.23929 1.03134 0.90019 1.00191 0.84519 1.22652 0.93909 0.99304 0.90650 1.21625 0.94124 0.99926 0.85067 0.87385 1.45013 1.24556 1.54511 1.09358 1.20100 0.80512 0.76885 0.89839 1.90690 1.48891 1.56382 1.48122 1.23360 1.03431 1.04707 0.96473 1.85586 1.25566 1.68149 1.12971 1.23218 1.12517 1.40596 0.93221 0.89811 1.26124 0.94031 0.94505 1.04405 1.70181 1.11396 1.35713 1.37469 0.84948 0.79016 0.77813 0.76164 1.19294 1.20310 1.18193 1.88597 1.41999 1.64800 1.34733 0.89584 0.92748 0.92543 0.90234 0.88318 0.88999 0.89603 0.89962 0.92933 0.93875 0.89096 0.88268 0.93686 0.74309 0.86948 0.86887 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.62 71.98 0.69 -0.89 16 2 C 0.06 0.78 4.08 31.26 0.13 0.91 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.15 -1.25 6.57 32.05 0.21 -1.03 16 5 C -0.15 -1.41 6.54 31.86 0.21 -1.21 16 6 C 0.09 1.28 3.58 31.07 0.11 1.39 16 7 H 0.07 1.11 7.46 -2.39 -0.02 1.09 16 8 C 0.03 0.53 4.38 86.30 0.38 0.91 16 9 N -0.51 -9.33 5.24 -881.49 -4.62 -13.95 16 10 C 0.06 1.21 5.72 86.45 0.49 1.71 16 11 C -0.17 -3.27 7.05 -9.90 -0.07 -3.34 16 12 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 13 C -0.15 -2.79 7.05 -9.90 -0.07 -2.86 16 14 H 0.14 2.07 8.14 -2.38 -0.02 2.05 16 15 C 0.06 1.09 6.26 86.45 0.54 1.63 16 16 C 0.10 2.40 5.98 44.99 0.27 2.67 16 17 H 0.11 3.20 7.40 -2.39 -0.02 3.18 16 18 N -0.68 -17.65 5.56 -442.54 -2.46 -20.12 16 19 C 0.54 20.02 7.85 87.66 0.69 20.71 16 20 O -0.56 -26.30 15.43 -3.06 -0.05 -26.35 16 21 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 22 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 23 C -0.55 -31.22 9.50 67.96 0.65 -30.57 16 24 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 25 C 0.01 0.81 5.49 84.86 0.47 1.27 16 26 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 27 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 30 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 31 O -0.38 -7.13 10.62 -148.98 -1.58 -8.72 16 32 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.68 8.06 -2.39 -0.02 0.66 16 36 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.69 7.85 -2.39 -0.02 0.67 16 39 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.05 0.76 7.77 -2.39 -0.02 0.75 16 41 H 0.04 0.86 7.75 -2.39 -0.02 0.84 16 42 H 0.09 1.66 7.84 -2.39 -0.02 1.64 16 43 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.04 0.82 8.00 -2.39 -0.02 0.80 16 45 H 0.42 7.81 8.83 -92.71 -0.82 6.99 16 46 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 47 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 48 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -76.79 402.05 -2.30 -79.09 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.13 Total: 23.00 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.13 Total: -13.31 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -6.80 Total: -89.74 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.63 Total: -35.06 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -76.79 -2.30 -79.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662021226.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.893 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds