Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 115.55073 * 2 1 4 4 C 1.53005 * 117.49886 * 145.66196 * 2 1 3 5 5 C 1.52995 * 117.50111 * 214.32465 * 2 1 3 6 6 H 1.09004 * 117.49896 * 359.97438 * 5 2 1 7 7 C 1.50701 * 117.50192 * 144.99852 * 5 2 1 8 8 O 1.21278 * 119.99616 * 359.97438 * 7 5 2 9 9 N 1.34779 * 120.00233 * 180.02562 * 7 5 2 10 10 C 1.46495 * 119.99932 * 180.02562 * 9 7 5 11 11 C 1.53005 * 109.46812 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46853 * 294.99902 * 11 10 9 13 13 C 1.52999 * 109.46920 * 174.99975 * 11 10 9 14 14 C 1.52999 * 117.49745 * 133.29001 * 13 11 10 15 15 C 1.53003 * 117.50066 * 64.62948 * 13 11 10 16 16 N 1.46494 * 109.47251 * 54.99859 * 11 10 9 17 17 C 1.46498 * 120.00036 * 55.58622 * 16 11 10 18 18 C 1.34781 * 119.99900 * 235.58451 * 16 11 10 19 19 O 1.21282 * 120.00053 * 0.02562 * 18 16 11 20 20 C 1.50698 * 119.99721 * 180.02562 * 18 16 11 21 21 S 1.81008 * 109.46751 * 180.02562 * 20 18 16 22 22 C 1.76200 * 99.99763 * 179.97438 * 21 20 18 23 23 H 1.08006 * 120.00094 * 359.97438 * 22 21 20 24 24 C 1.38801 * 120.00058 * 180.02562 * 22 21 20 25 25 N 1.31628 * 120.00219 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 119.99781 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47123 * 90.00247 * 26 24 22 28 28 H 1.48501 * 109.47121 * 210.00116 * 26 24 22 29 29 H 1.48500 * 109.47600 * 330.00129 * 26 24 22 30 30 H 1.08993 * 109.47028 * 205.58707 * 1 2 3 31 31 H 1.09000 * 109.46704 * 85.58668 * 1 2 3 32 32 H 1.09005 * 109.47122 * 325.58918 * 1 2 3 33 33 H 1.08993 * 117.50021 * 214.98201 * 4 2 1 34 34 H 1.09001 * 117.49352 * 0.02562 * 4 2 1 35 35 H 0.97001 * 119.99437 * 359.97438 * 9 7 5 36 36 H 1.08997 * 109.47093 * 299.99351 * 10 9 7 37 37 H 1.08993 * 109.47266 * 60.00231 * 10 9 7 38 38 H 1.08992 * 115.55030 * 278.95813 * 13 11 10 39 39 H 1.08997 * 117.50471 * 359.97438 * 14 13 11 40 40 H 1.09003 * 117.49962 * 145.02066 * 14 13 11 41 41 H 1.08994 * 117.50130 * 214.98116 * 15 13 11 42 42 H 1.08997 * 117.49726 * 0.02562 * 15 13 11 43 43 H 1.08996 * 109.47197 * 95.36768 * 17 16 11 44 44 H 1.09009 * 109.46963 * 215.36539 * 17 16 11 45 45 H 1.08998 * 109.47503 * 335.36017 * 17 16 11 46 46 H 1.09000 * 109.47396 * 299.99671 * 20 18 16 47 47 H 1.08994 * 109.47386 * 60.00424 * 20 18 16 48 48 H 0.96995 * 120.00296 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 0.7656 5 6 2.2365 -1.1207 -0.7652 6 1 1.6113 -1.8584 -1.2684 7 6 3.5291 -0.7806 -1.4614 8 8 3.9711 0.3472 -1.4022 9 7 4.1933 -1.7295 -2.1506 10 6 5.4501 -1.3989 -2.8269 11 6 5.9936 -2.6443 -3.5301 12 1 6.2557 -3.3964 -2.7860 13 6 7.2380 -2.2712 -4.3384 14 6 8.4636 -3.1776 -4.2072 15 6 8.4657 -1.7889 -3.5631 16 7 4.9704 -3.1829 -4.4296 17 6 4.3787 -2.3279 -5.4615 18 6 4.5735 -4.4652 -4.3076 19 8 5.0630 -5.1729 -3.4530 20 6 3.5213 -5.0194 -5.2333 21 16 3.2071 -6.7534 -4.8199 22 6 1.9749 -7.1355 -6.0201 23 1 1.6465 -6.3784 -6.7169 24 6 1.4255 -8.4092 -6.0694 25 7 0.5046 -8.6946 -6.9656 26 14 1.9929 -9.7184 -4.8639 27 1 1.1455 -9.6698 -3.6453 28 1 1.8753 -11.0572 -5.4955 29 1 3.4089 -9.4690 -4.4924 30 1 -0.3633 -0.9268 0.4438 31 1 -0.3633 0.0791 -1.0246 32 1 -0.3633 0.8479 0.5808 33 1 3.1715 -0.8746 1.2687 34 1 1.6112 -1.8581 1.2688 35 1 3.8395 -2.6314 -2.1982 36 1 5.2713 -0.6153 -3.5631 37 1 6.1764 -1.0494 -2.0932 38 1 7.0481 -1.8195 -5.3120 39 1 8.3836 -4.0394 -3.5447 40 1 9.0803 -3.3218 -5.0943 41 1 9.0837 -1.0201 -4.0268 42 1 8.3870 -1.7378 -2.4772 43 1 4.9061 -2.4774 -6.4036 44 1 3.3274 -2.5865 -5.5887 45 1 4.4620 -1.2838 -5.1601 46 1 2.6006 -4.4470 -5.1210 47 1 3.8699 -4.9486 -6.2635 48 1 0.1210 -9.5847 -7.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679787952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = -25.707574 kcal Electronic energy + Delta-G solvation = -27538.275178 eV Core-core repulsion = 23721.117932 eV Total energy + Delta-G solvation = -3817.157246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54806 -39.75062 -37.85184 -36.99925 -35.49804 -34.30397 -32.48329 -30.75044 -29.15474 -28.35469 -26.98630 -25.67214 -24.92291 -23.12694 -22.38594 -21.10115 -20.88965 -20.08827 -19.36055 -17.79771 -17.61199 -17.19077 -16.47089 -15.92903 -15.71718 -15.34194 -15.14466 -14.98938 -14.60291 -14.41403 -14.13637 -13.87586 -13.49550 -13.35989 -13.21800 -13.01804 -12.83861 -12.75627 -12.50406 -12.35185 -12.26864 -12.04694 -11.74898 -11.68560 -11.49800 -11.30808 -11.05253 -10.75483 -10.62840 -10.61394 -10.36349 -10.33261 -9.95544 -9.90090 -9.58372 -9.25521 -9.04867 -8.74843 -8.55102 -6.97545 -6.33178 -4.05548 2.32245 2.56252 2.79150 2.88238 3.10476 3.28846 3.46117 3.50725 3.57934 3.60853 4.28235 4.30644 4.41430 4.51032 4.53984 4.59160 4.59990 4.73212 4.87480 4.87639 4.93294 5.00134 5.05904 5.06035 5.14464 5.15779 5.31636 5.38223 5.40949 5.46667 5.47400 5.50988 5.58246 5.66164 5.70263 5.71271 5.73787 5.78413 5.91331 5.94907 5.97602 6.05221 6.19945 6.45339 7.28750 7.32358 7.89745 8.04637 8.29945 8.37261 9.12894 10.76072 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.003456 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.890242 B = 8100.739435 C =10561.499109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 H 0.116 0.884 4 C -0.148 4.148 5 C -0.194 4.194 6 H 0.125 0.875 7 C 0.546 3.454 8 O -0.546 6.546 9 N -0.721 5.721 10 C 0.115 3.885 11 C 0.160 3.840 12 H 0.109 0.891 13 C -0.164 4.164 14 C -0.169 4.169 15 C -0.173 4.173 16 N -0.614 5.614 17 C 0.076 3.924 18 C 0.532 3.468 19 O -0.517 6.517 20 C -0.121 4.121 21 S -0.142 6.142 22 C -0.522 4.522 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.880 5.880 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 18.184 9.611 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 H 0.134 0.866 4 C -0.185 4.185 5 C -0.215 4.215 6 H 0.143 0.857 7 C 0.333 3.667 8 O -0.424 6.424 9 N -0.372 5.372 10 C -0.010 4.010 11 C 0.056 3.944 12 H 0.127 0.873 13 C -0.183 4.183 14 C -0.206 4.206 15 C -0.211 4.211 16 N -0.350 5.350 17 C -0.067 4.067 18 C 0.320 3.680 19 O -0.391 6.391 20 C -0.271 4.271 21 S 0.084 5.916 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.112 4.112 25 N -0.516 5.516 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.313 17.797 10.812 22.811 hybrid contribution -0.693 -0.366 -1.031 1.295 sum 8.620 17.431 9.781 21.767 Atomic orbital electron populations 1.21415 0.92136 1.02309 1.02352 1.22365 0.95298 0.94886 1.01330 0.86604 1.23120 1.03104 1.01581 0.90738 1.22338 0.97728 1.05519 0.95953 0.85671 1.19658 0.84606 0.84464 0.78013 1.90677 1.68811 1.21064 1.61872 1.45878 1.24467 1.13976 1.52918 1.21642 0.85877 0.97066 0.96383 1.20796 0.86484 0.95348 0.91760 0.87319 1.22474 0.89171 1.05595 1.01107 1.23021 1.00105 0.94186 1.03246 1.22963 1.00213 0.98098 0.99793 1.47834 1.40650 1.11406 1.35073 1.21799 0.99094 0.94978 0.90805 1.20377 0.82574 0.80611 0.84400 1.90698 1.55934 1.57248 1.35223 1.23312 0.99573 1.02608 1.01643 1.84783 1.53593 1.04701 1.48479 1.22299 1.23840 1.01556 1.19237 0.89412 1.24706 0.93693 0.97690 0.95144 1.69932 1.26085 1.21849 1.33747 0.86745 0.82160 0.81432 0.81569 1.19210 1.19925 1.15934 0.92173 0.91825 0.91712 0.88366 0.87616 0.75916 0.90894 0.90344 0.87233 0.88298 0.88637 0.88490 0.88587 0.92363 0.90650 0.90941 0.88544 0.88447 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 10.19 37.16 0.38 -0.55 16 2 C -0.12 -1.10 5.92 -90.62 -0.54 -1.64 16 3 H 0.12 1.20 7.67 -51.93 -0.40 0.80 16 4 C -0.15 -1.29 9.89 -26.69 -0.26 -1.55 16 5 C -0.19 -1.95 5.91 -91.73 -0.54 -2.49 16 6 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.55 6.61 7.61 -10.98 -0.08 6.53 16 8 O -0.55 -8.21 16.26 5.56 0.09 -8.12 16 9 N -0.72 -7.93 5.39 -60.30 -0.32 -8.25 16 10 C 0.11 1.16 4.66 -4.04 -0.02 1.14 16 11 C 0.16 1.70 2.38 -67.93 -0.16 1.54 16 12 H 0.11 1.37 6.71 -51.93 -0.35 1.03 16 13 C -0.16 -1.50 5.17 -90.62 -0.47 -1.97 16 14 C -0.17 -1.58 10.18 -26.69 -0.27 -1.85 16 15 C -0.17 -1.36 9.88 -26.69 -0.26 -1.62 16 16 N -0.61 -7.32 2.20 -173.94 -0.38 -7.70 16 17 C 0.08 0.72 9.29 59.85 0.56 1.28 16 18 C 0.53 8.68 7.65 -10.98 -0.08 8.60 16 19 O -0.52 -10.12 15.20 5.56 0.08 -10.04 16 20 C -0.12 -2.21 4.78 36.00 0.17 -2.03 16 21 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 22 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 23 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 24 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 25 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 26 Si 0.86 21.30 27.74 -169.99 -4.71 16.58 16 27 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 30 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.11 0.77 8.05 -51.93 -0.42 0.36 16 35 H 0.41 4.59 8.10 -40.82 -0.33 4.26 16 36 H 0.07 0.73 6.73 -51.93 -0.35 0.38 16 37 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 38 H 0.11 0.94 7.70 -51.93 -0.40 0.54 16 39 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.73 7.96 -51.93 -0.41 0.31 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.72 6.66 -51.92 -0.35 0.38 16 45 H 0.07 0.59 6.31 -51.93 -0.33 0.26 16 46 H 0.10 1.63 7.41 -51.92 -0.38 1.24 16 47 H 0.10 1.70 8.11 -51.92 -0.42 1.28 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -33.49 407.81 -9.60 -43.09 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.91 Total: 5.29 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.37 Total: -6.26 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.07 Total: -41.26 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.49 -9.60 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679787952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.382 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds