Wall clock time and date at job start Sat Apr 11 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 119.99926 * 2 1 4 4 C 1.53007 * 109.46942 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47245 * 240.00147 * 3 2 1 6 6 C 1.50699 * 109.47308 * 120.00188 * 3 2 1 7 7 O 1.21277 * 119.99860 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00237 * 180.02562 * 6 3 2 9 9 C 1.46500 * 120.00144 * 179.97438 * 8 6 3 10 10 H 1.08993 * 110.78042 * 328.24165 * 9 8 6 11 11 C 1.55160 * 110.71865 * 91.47826 * 9 8 6 12 12 C 1.54903 * 101.58590 * 82.86012 * 11 9 8 13 13 N 1.47743 * 104.89846 * 36.95506 * 12 11 9 14 14 C 1.34776 * 125.81757 * 155.99136 * 13 12 11 15 15 O 1.21277 * 119.99967 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00125 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47143 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00120 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00194 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00555 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99465 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00211 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47433 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46966 * 120.00575 * 22 20 18 25 25 H 1.48500 * 109.46855 * 239.99922 * 22 20 18 26 26 C 1.47018 * 108.53343 * 335.99147 * 13 12 11 27 27 H 1.09002 * 109.88241 * 120.42592 * 26 13 12 28 28 C 1.52999 * 109.88094 * 241.43707 * 26 13 12 29 29 H 1.08000 * 120.00294 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99781 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00294 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.46880 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46805 * 299.99623 * 4 3 2 34 34 H 1.08998 * 109.47000 * 60.00117 * 4 3 2 35 35 H 1.08997 * 109.47198 * 299.99623 * 5 3 2 36 36 H 1.08996 * 109.46923 * 60.00219 * 5 3 2 37 37 H 1.09001 * 109.46874 * 179.97438 * 5 3 2 38 38 H 0.97005 * 119.99641 * 359.97438 * 8 6 3 39 39 H 1.08995 * 111.00351 * 200.93761 * 11 9 8 40 40 H 1.09001 * 111.00369 * 324.78434 * 11 9 8 41 41 H 1.08995 * 110.36955 * 155.84646 * 12 11 9 42 42 H 1.09008 * 110.36944 * 278.06431 * 12 11 9 43 43 H 1.09002 * 109.47451 * 300.00237 * 16 14 13 44 44 H 1.09008 * 109.46857 * 60.00167 * 16 14 13 45 45 H 0.97000 * 119.99797 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.46795 * 178.28541 * 28 26 13 47 47 H 1.09000 * 109.47189 * 298.27812 * 28 26 13 48 48 H 1.08995 * 109.47480 * 58.28328 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9298 1.3850 1.2304 7 8 2.9346 0.4722 2.0289 8 7 3.6986 2.4712 1.4440 9 6 4.5405 2.5490 2.6404 10 1 4.0771 2.0219 3.4743 11 6 5.9566 1.9840 2.3528 12 6 6.6527 3.2054 1.7023 13 7 6.1275 4.3764 2.4344 14 6 6.7387 5.5718 2.5526 15 8 6.2093 6.4640 3.1807 16 6 8.0793 5.8001 1.9033 17 16 8.6327 7.4902 2.2401 18 6 10.1757 7.4822 1.3892 19 1 10.5024 6.5923 0.8718 20 6 10.9708 8.6199 1.3831 21 7 10.5724 9.7047 2.0133 22 14 12.6069 8.6111 0.4817 23 1 12.8221 7.2801 -0.1406 24 1 12.5957 9.6549 -0.5745 25 1 13.7033 8.8916 1.4432 26 6 4.8243 4.0193 3.0136 27 1 4.8586 4.1266 4.0978 28 6 3.7330 4.9228 2.4358 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.6141 3.4121 0.0011 33 1 0.4421 2.4105 -0.8892 34 1 0.4428 2.4101 0.8909 35 1 3.6514 0.5578 -1.2493 36 1 2.3163 1.3285 -2.1392 37 1 3.4876 2.3304 -1.2494 38 1 3.6945 3.2014 0.8054 39 1 6.4572 1.6955 3.2770 40 1 5.9091 1.1456 1.6579 41 1 7.7336 3.1354 1.8238 42 1 6.3939 3.2712 0.6454 43 1 8.8038 5.0929 2.3071 44 1 7.9910 5.6548 0.8266 45 1 11.1282 10.4996 2.0093 46 1 2.7659 4.6325 2.8466 47 1 3.9428 5.9596 2.6986 48 1 3.7127 4.8198 1.3510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680417043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:21 Heat of formation + Delta-G solvation = -49.504313 kcal Electronic energy + Delta-G solvation = -27752.151933 eV Core-core repulsion = 23933.962782 eV Total energy + Delta-G solvation = -3818.189150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02134 -39.74532 -37.63425 -36.51947 -34.30826 -32.45647 -31.84196 -31.48719 -30.51202 -28.49611 -27.87697 -26.08400 -25.51437 -24.49839 -22.87703 -22.00553 -20.46424 -19.15670 -18.91868 -17.74191 -17.37842 -17.13193 -16.45900 -16.07116 -15.41271 -15.18319 -14.87049 -14.82557 -14.51862 -14.43531 -14.01160 -13.78343 -13.70647 -13.47918 -12.97749 -12.85612 -12.82970 -12.64072 -12.60086 -12.49037 -12.25727 -11.92820 -11.74142 -11.69051 -11.62144 -11.44258 -11.16459 -11.09588 -11.05592 -11.02107 -10.77933 -10.12526 -9.83393 -9.69344 -9.40397 -9.38337 -9.10067 -8.60352 -8.26216 -6.53321 -6.24602 -3.95268 1.87300 2.32977 2.79265 2.91611 3.02873 3.19393 3.23681 3.28920 3.56530 4.11716 4.13192 4.17950 4.28549 4.32338 4.49511 4.62543 4.75926 4.93940 4.97577 4.99113 5.04995 5.07765 5.10786 5.18165 5.21846 5.27629 5.29810 5.36644 5.46578 5.51381 5.54205 5.59771 5.66460 5.68140 5.71834 5.74062 5.82538 5.88472 6.09367 6.14255 6.19559 6.24902 6.37804 6.42964 7.16218 7.56980 7.61001 7.90678 8.32601 8.51148 9.20932 10.82855 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.002211 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.170484 B =12663.091081 C =12942.623984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.056 4.056 4 C -0.145 4.145 5 C -0.138 4.138 6 C 0.528 3.472 7 O -0.535 6.535 8 N -0.717 5.717 9 C 0.137 3.863 10 H 0.110 0.890 11 C -0.142 4.142 12 C 0.100 3.900 13 N -0.624 5.624 14 C 0.551 3.449 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.130 3.870 27 H 0.088 0.912 28 C -0.161 4.161 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.403 0.597 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 -19.357 -5.740 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.142 4.142 3 C -0.059 4.059 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.314 3.686 7 O -0.411 6.411 8 N -0.371 5.371 9 C 0.031 3.969 10 H 0.128 0.872 11 C -0.181 4.181 12 C -0.023 4.023 13 N -0.362 5.362 14 C 0.339 3.661 15 O -0.386 6.386 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C 0.026 3.974 27 H 0.106 0.894 28 C -0.219 4.219 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.682 -18.396 -4.165 26.548 hybrid contribution 1.777 -0.753 -1.649 2.538 sum -16.906 -19.149 -5.813 26.197 Atomic orbital electron populations 1.23976 0.95886 1.02295 1.00856 1.22476 0.95610 0.96524 0.99582 1.19916 0.95742 0.96104 0.94154 1.21974 0.98823 0.96280 1.03194 1.21828 0.99287 1.02684 0.95747 1.20442 0.79391 0.81754 0.86990 1.90702 1.66076 1.37622 1.46668 1.46155 1.44524 1.21185 1.25265 1.21936 0.91019 0.95169 0.88774 0.87232 1.23199 0.95074 0.97408 1.02423 1.22352 0.99648 0.84439 0.95857 1.48719 1.20181 1.12554 1.54774 1.20005 0.86236 0.79927 0.79886 1.90700 1.65814 1.41489 1.40563 1.23516 0.95554 1.07682 1.02993 1.85397 1.23249 1.04206 1.70512 1.22893 1.05208 1.01709 1.38454 0.90903 1.25000 0.98576 0.94586 0.95462 1.70028 1.37598 1.02338 1.40272 0.86114 0.81932 0.78250 0.79185 1.19621 1.20558 1.20546 1.21722 0.84203 0.92430 0.99088 0.89406 1.22081 0.97673 1.01889 1.00292 0.87878 0.88223 0.86854 0.91744 0.90870 0.91586 0.91729 0.91056 0.91756 0.75919 0.89354 0.89527 0.90009 0.91560 0.89326 0.89384 0.92220 0.91683 0.90203 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 13.70 29.02 0.40 -0.89 16 2 C -0.12 -0.96 8.00 -36.02 -0.29 -1.24 16 3 C -0.06 -0.39 0.84 -156.81 -0.13 -0.52 16 4 C -0.15 -0.82 7.02 37.16 0.26 -0.56 16 5 C -0.14 -0.77 8.35 37.16 0.31 -0.46 16 6 C 0.53 4.95 6.47 -10.99 -0.07 4.88 16 7 O -0.53 -6.97 15.68 5.56 0.09 -6.88 16 8 N -0.72 -5.78 4.29 -52.03 -0.22 -6.00 16 9 C 0.14 1.25 3.18 -66.09 -0.21 1.04 16 10 H 0.11 1.07 7.55 -51.93 -0.39 0.68 16 11 C -0.14 -1.22 6.77 -24.58 -0.17 -1.39 16 12 C 0.10 1.01 6.69 -2.36 -0.02 0.99 16 13 N -0.62 -8.28 3.08 -162.77 -0.50 -8.78 16 14 C 0.55 10.07 7.66 -10.99 -0.08 9.98 16 15 O -0.51 -11.23 14.89 5.56 0.08 -11.15 16 16 C -0.15 -2.92 5.18 36.01 0.19 -2.73 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 22 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.13 1.45 3.42 -66.95 -0.23 1.22 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 C -0.16 -1.73 8.50 37.16 0.32 -1.41 16 29 H 0.10 0.59 5.69 -52.49 -0.30 0.29 16 30 H 0.10 0.58 8.06 -52.48 -0.42 0.15 16 31 H 0.11 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.06 0.32 7.56 -51.92 -0.39 -0.07 16 33 H 0.07 0.33 7.50 -51.93 -0.39 -0.06 16 34 H 0.07 0.41 7.50 -51.93 -0.39 0.02 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.32 7.57 -51.93 -0.39 -0.08 16 38 H 0.40 2.82 5.33 -40.82 -0.22 2.60 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.82 7.51 -51.93 -0.39 0.43 16 42 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.09 1.65 7.86 -51.92 -0.41 1.24 16 44 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 1.12 6.88 -51.93 -0.36 0.76 16 48 H 0.05 0.49 6.22 -51.93 -0.32 0.17 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -34.86 397.90 -8.31 -43.16 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.72 Total: 0.35 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 0.47 Total: -3.87 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.01 Total: -39.96 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.17 Total: -18.03 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.86 -8.31 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680417043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.339 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds