Wall clock time and date at job start Sat Apr 11 2020 06:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50699 * 119.99926 * 2 1 4 4 C 1.53007 * 109.46942 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47245 * 240.00147 * 3 2 1 6 6 C 1.50699 * 109.47308 * 120.00188 * 3 2 1 7 7 O 1.21277 * 119.99860 * 359.97438 * 6 3 2 8 8 N 1.34774 * 120.00237 * 180.02562 * 6 3 2 9 9 C 1.46500 * 120.00144 * 179.97438 * 8 6 3 10 10 H 1.08993 * 110.78042 * 328.24165 * 9 8 6 11 11 C 1.55160 * 110.71865 * 91.47826 * 9 8 6 12 12 C 1.54903 * 101.58590 * 82.86012 * 11 9 8 13 13 N 1.47743 * 104.89846 * 36.95506 * 12 11 9 14 14 C 1.34776 * 125.81757 * 155.99136 * 13 12 11 15 15 O 1.21277 * 119.99967 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00125 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47143 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00120 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00194 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00555 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99465 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00211 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47433 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46966 * 120.00575 * 22 20 18 25 25 H 1.48500 * 109.46855 * 239.99922 * 22 20 18 26 26 C 1.47018 * 108.53343 * 335.99147 * 13 12 11 27 27 H 1.09002 * 109.88241 * 120.42592 * 26 13 12 28 28 C 1.52999 * 109.88094 * 241.43707 * 26 13 12 29 29 H 1.08000 * 120.00294 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99781 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00294 * 180.02562 * 2 1 3 32 32 H 1.09008 * 109.46880 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46805 * 299.99623 * 4 3 2 34 34 H 1.08998 * 109.47000 * 60.00117 * 4 3 2 35 35 H 1.08997 * 109.47198 * 299.99623 * 5 3 2 36 36 H 1.08996 * 109.46923 * 60.00219 * 5 3 2 37 37 H 1.09001 * 109.46874 * 179.97438 * 5 3 2 38 38 H 0.97005 * 119.99641 * 359.97438 * 8 6 3 39 39 H 1.08995 * 111.00351 * 200.93761 * 11 9 8 40 40 H 1.09001 * 111.00369 * 324.78434 * 11 9 8 41 41 H 1.08995 * 110.36955 * 155.84646 * 12 11 9 42 42 H 1.09008 * 110.36944 * 278.06431 * 12 11 9 43 43 H 1.09002 * 109.47451 * 300.00237 * 16 14 13 44 44 H 1.09008 * 109.46857 * 60.00167 * 16 14 13 45 45 H 0.97000 * 119.99797 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.46795 * 178.28541 * 28 26 13 47 47 H 1.09000 * 109.47189 * 298.27812 * 28 26 13 48 48 H 1.08995 * 109.47480 * 58.28328 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9298 1.3850 1.2304 7 8 2.9346 0.4722 2.0289 8 7 3.6986 2.4712 1.4440 9 6 4.5405 2.5490 2.6404 10 1 4.0771 2.0219 3.4743 11 6 5.9566 1.9840 2.3528 12 6 6.6527 3.2054 1.7023 13 7 6.1275 4.3764 2.4344 14 6 6.7387 5.5718 2.5526 15 8 6.2093 6.4640 3.1807 16 6 8.0793 5.8001 1.9033 17 16 8.6327 7.4902 2.2401 18 6 10.1757 7.4822 1.3892 19 1 10.5024 6.5923 0.8718 20 6 10.9708 8.6199 1.3831 21 7 10.5724 9.7047 2.0133 22 14 12.6069 8.6111 0.4817 23 1 12.8221 7.2801 -0.1406 24 1 12.5957 9.6549 -0.5745 25 1 13.7033 8.8916 1.4432 26 6 4.8243 4.0193 3.0136 27 1 4.8586 4.1266 4.0978 28 6 3.7330 4.9228 2.4358 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.6141 3.4121 0.0011 33 1 0.4421 2.4105 -0.8892 34 1 0.4428 2.4101 0.8909 35 1 3.6514 0.5578 -1.2493 36 1 2.3163 1.3285 -2.1392 37 1 3.4876 2.3304 -1.2494 38 1 3.6945 3.2014 0.8054 39 1 6.4572 1.6955 3.2770 40 1 5.9091 1.1456 1.6579 41 1 7.7336 3.1354 1.8238 42 1 6.3939 3.2712 0.6454 43 1 8.8038 5.0929 2.3071 44 1 7.9910 5.6548 0.8266 45 1 11.1282 10.4996 2.0093 46 1 2.7659 4.6325 2.8466 47 1 3.9428 5.9596 2.6986 48 1 3.7127 4.8198 1.3510 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680417043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:20 Heat of formation + Delta-G solvation = -71.810172 kcal Electronic energy + Delta-G solvation = -27753.119187 eV Core-core repulsion = 23933.962782 eV Total energy + Delta-G solvation = -3819.156405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87229 -40.76544 -38.78473 -37.20287 -35.24053 -34.58517 -32.78233 -32.31031 -31.36520 -29.82262 -28.29958 -27.65856 -26.94040 -25.09252 -23.92416 -22.73641 -21.30002 -20.37356 -19.67547 -19.46570 -18.21324 -18.04959 -17.60762 -16.89214 -16.87836 -16.45814 -16.25728 -15.84992 -15.61623 -15.32159 -15.15949 -14.79373 -14.61839 -14.45680 -14.30020 -14.03250 -13.78350 -13.38460 -13.32399 -13.18253 -13.14770 -13.06810 -12.91670 -12.70024 -12.68497 -12.54792 -12.52548 -12.26124 -12.13099 -11.95420 -11.70891 -11.63419 -11.15953 -10.88373 -10.82423 -10.27421 -10.27091 -10.14053 -9.74906 -8.66958 -8.35015 -6.12823 1.23452 1.32191 1.41282 1.44788 1.56494 1.58090 1.61497 2.02984 2.22671 2.27165 2.99336 3.17545 3.35132 3.49496 3.59611 3.76620 3.87531 3.92961 3.99805 4.10974 4.11845 4.18754 4.27601 4.32700 4.46279 4.48124 4.55609 4.63484 4.69287 4.74989 4.78754 4.86197 4.86882 4.93064 4.95352 5.01130 5.08796 5.19339 5.26424 5.29464 5.38276 5.42109 5.46464 5.72539 5.84726 6.19871 6.35794 6.49204 7.06584 7.12929 7.20227 8.74344 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022302 B = 0.002211 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.170484 B =12663.091081 C =12942.623984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 C -0.052 4.052 4 C -0.145 4.145 5 C -0.136 4.136 6 C 0.529 3.471 7 O -0.574 6.574 8 N -0.707 5.707 9 C 0.147 3.853 10 H 0.107 0.893 11 C -0.132 4.132 12 C 0.093 3.907 13 N -0.612 5.612 14 C 0.551 3.449 15 O -0.558 6.558 16 C -0.121 4.121 17 S -0.149 6.149 18 C -0.544 4.544 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.128 3.872 27 H 0.078 0.922 28 C -0.155 4.155 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.083 0.917 47 H 0.044 0.956 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.967 -21.249 -7.741 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.055 4.055 4 C -0.202 4.202 5 C -0.194 4.194 6 C 0.317 3.683 7 O -0.453 6.453 8 N -0.361 5.361 9 C 0.041 3.959 10 H 0.125 0.875 11 C -0.171 4.171 12 C -0.028 4.028 13 N -0.348 5.348 14 C 0.339 3.661 15 O -0.436 6.436 16 C -0.272 4.272 17 S 0.079 5.921 18 C -0.692 4.692 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 C 0.024 3.976 27 H 0.096 0.904 28 C -0.213 4.213 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.063 0.937 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.674 -20.330 -6.194 28.291 hybrid contribution 1.641 -0.293 -1.000 1.944 sum -17.034 -20.623 -7.194 27.698 Atomic orbital electron populations 1.24160 0.95656 1.03184 0.99433 1.22533 0.96104 0.96575 1.00938 1.19919 0.95767 0.96315 0.93468 1.22003 0.98678 0.95968 1.03583 1.21844 0.99199 1.02966 0.95355 1.20874 0.79107 0.81132 0.87187 1.90689 1.67350 1.39052 1.48175 1.46059 1.43965 1.21183 1.24868 1.21763 0.91640 0.93266 0.89237 0.87505 1.23158 0.94144 0.96918 1.02841 1.22654 1.00144 0.83377 0.96651 1.48584 1.20604 1.11736 1.53846 1.19675 0.85782 0.80977 0.79665 1.90689 1.66704 1.43485 1.42743 1.23319 0.96805 1.02691 1.04371 1.85574 1.24256 1.10890 1.71428 1.23216 1.05317 1.02269 1.38359 0.89952 1.26126 1.02840 0.94007 0.96226 1.70189 1.39401 1.03214 1.41942 0.84911 0.76358 0.78961 0.77761 1.17982 1.19908 1.20044 1.21842 0.83228 0.93919 0.98612 0.90364 1.22013 0.98295 0.99591 1.01448 0.86759 0.87627 0.87992 0.90831 0.89452 0.92259 0.92289 0.89962 0.90760 0.75003 0.88895 0.88376 0.89499 0.89547 0.87753 0.87513 0.92011 0.89865 0.93672 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 13.70 67.79 0.93 -1.27 16 2 C -0.14 -2.03 8.00 25.66 0.21 -1.83 16 3 C -0.05 -0.62 0.84 -53.67 -0.05 -0.67 16 4 C -0.15 -1.27 7.02 71.98 0.51 -0.76 16 5 C -0.14 -1.18 8.35 71.98 0.60 -0.58 16 6 C 0.53 8.96 6.47 87.66 0.57 9.53 16 7 O -0.57 -14.35 15.68 -3.02 -0.05 -14.39 16 8 N -0.71 -9.71 4.29 -436.92 -1.87 -11.58 16 9 C 0.15 2.39 3.18 46.18 0.15 2.54 16 10 H 0.11 1.92 7.55 -2.39 -0.02 1.91 16 11 C -0.13 -1.92 6.77 31.99 0.22 -1.70 16 12 C 0.09 1.62 6.69 86.79 0.58 2.20 16 13 N -0.61 -15.37 3.08 -787.26 -2.42 -17.79 16 14 C 0.55 20.02 7.66 87.66 0.67 20.69 16 15 O -0.56 -25.25 14.89 -3.02 -0.04 -25.29 16 16 C -0.12 -4.72 5.18 71.24 0.37 -4.35 16 17 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 18 C -0.54 -30.64 9.50 67.96 0.65 -29.99 16 19 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.72 5.49 84.86 0.47 1.18 16 21 N -0.91 -55.50 13.22 21.65 0.29 -55.22 16 22 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.13 2.70 3.42 45.34 0.16 2.85 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 C -0.16 -3.17 8.50 71.98 0.61 -2.56 16 29 H 0.11 1.05 5.69 -2.91 -0.02 1.04 16 30 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 31 H 0.10 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.07 0.51 7.56 -2.38 -0.02 0.49 16 33 H 0.09 0.54 7.50 -2.39 -0.02 0.52 16 34 H 0.06 0.61 7.50 -2.39 -0.02 0.60 16 35 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.49 7.57 -2.39 -0.02 0.47 16 38 H 0.41 4.50 5.33 -92.70 -0.49 4.01 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.48 7.51 -2.39 -0.02 1.46 16 42 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.10 3.73 7.86 -2.39 -0.02 3.71 16 44 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.04 1.28 6.88 -2.39 -0.02 1.26 16 48 H 0.07 1.15 6.22 -2.39 -0.01 1.14 16 Total: -1.00 -78.36 397.90 3.85 -74.51 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.46 Total: 18.68 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.63 Total: -4.72 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.01 Total: -84.60 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.09 Total: -39.69 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -78.36 3.85 -74.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680417043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.700 kcal (2) G-P(sol) polarization free energy of solvation -78.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds