Wall clock time and date at job start Sat Apr 11 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00260 * 2 1 4 4 C 1.52997 * 109.46940 * 125.00042 * 3 2 1 5 5 C 1.53004 * 109.47000 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47208 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 5 4 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 5 10 10 H 1.08999 * 110.64763 * 34.29805 * 9 8 6 11 11 C 1.55152 * 110.72343 * 271.15182 * 9 8 6 12 12 C 1.54905 * 101.58752 * 206.13603 * 11 9 8 13 13 N 1.47430 * 104.82936 * 37.00978 * 12 11 9 14 14 C 1.34776 * 125.64938 * 155.90272 * 13 12 11 15 15 O 1.21279 * 120.00383 * 179.97438 * 14 13 12 16 16 C 1.50701 * 119.99611 * 359.97438 * 14 13 12 17 17 S 1.81002 * 109.46789 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99952 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00097 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99793 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47121 * 60.00585 * 22 20 18 24 24 H 1.48510 * 109.46782 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47416 * 300.00014 * 22 20 18 26 26 C 1.47316 * 108.73523 * 335.71758 * 13 12 11 27 27 H 1.09001 * 109.85494 * 120.61359 * 26 13 12 28 28 C 1.53002 * 110.06187 * 241.87119 * 26 13 12 29 29 H 1.08006 * 119.99803 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.00348 * 179.97438 * 1 2 3 31 31 H 1.08006 * 119.99803 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46839 * 4.99654 * 3 2 1 33 33 H 1.09001 * 109.46310 * 244.99417 * 3 2 1 34 34 H 1.09000 * 109.47849 * 59.99708 * 4 3 2 35 35 H 1.08998 * 109.47443 * 299.99576 * 4 3 2 36 36 H 1.09009 * 109.46730 * 59.99606 * 5 4 3 37 37 H 1.08998 * 109.46846 * 300.00150 * 5 4 3 38 38 H 0.97000 * 119.99894 * 359.71837 * 8 6 5 39 39 H 1.09003 * 111.00623 * 324.21532 * 11 9 8 40 40 H 1.09001 * 111.00663 * 88.06047 * 11 9 8 41 41 H 1.08999 * 110.36885 * 155.84564 * 12 11 9 42 42 H 1.08999 * 110.37034 * 278.06102 * 12 11 9 43 43 H 1.08996 * 109.47123 * 299.99393 * 16 14 13 44 44 H 1.08997 * 109.47834 * 59.99983 * 16 14 13 45 45 H 0.97001 * 119.99400 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47260 * 177.73072 * 28 26 13 47 47 H 1.09002 * 109.47253 * 297.73209 * 28 26 13 48 48 H 1.09000 * 109.46973 * 57.72919 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8006 2.6577 1.1813 6 6 4.7571 2.6855 2.3455 7 8 4.8200 1.7391 3.1014 8 7 5.5383 3.7646 2.5502 9 6 6.4638 3.7940 3.6854 10 1 6.8597 2.7982 3.8845 11 6 5.7675 4.3701 4.9466 12 6 6.9733 4.9391 5.7352 13 7 7.8741 5.4862 4.7042 14 6 8.7911 6.4550 4.8964 15 8 9.4812 6.8288 3.9718 16 6 8.9589 7.0738 6.2602 17 16 10.2577 8.3329 6.1957 18 6 10.2415 8.8753 7.8721 19 1 9.5539 8.4314 8.5767 20 6 11.1133 9.8724 8.2873 21 7 11.9517 10.4131 7.4286 22 14 11.0956 10.4479 10.0644 23 1 11.4073 9.3038 10.9583 24 1 12.1136 11.5132 10.2498 25 1 9.7517 10.9847 10.3976 26 6 7.6094 4.7960 3.4300 27 1 7.3072 5.5195 2.6728 28 6 8.8617 4.0478 2.9684 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 3.7400 0.5064 1.0922 35 1 2.4773 1.2356 2.1130 36 1 3.0959 3.4846 1.2705 37 1 4.3584 2.7547 0.2498 38 1 5.4877 4.5216 1.9458 39 1 5.0671 5.1613 4.6792 40 1 5.2679 3.5828 5.5111 41 1 6.6459 5.7292 6.4109 42 1 7.4703 4.1455 6.2931 43 1 8.0205 7.5349 6.5680 44 1 9.2371 6.3020 6.9778 45 1 12.5606 11.1102 7.7188 46 1 8.6436 3.5083 2.0468 47 1 9.6662 4.7614 2.7900 48 1 9.1675 3.3409 3.7397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680418139.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:13 Heat of formation + Delta-G solvation = -67.754107 kcal Electronic energy + Delta-G solvation = -26331.708022 eV Core-core repulsion = 22512.727501 eV Total energy + Delta-G solvation = -3818.980521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.64294 -39.53428 -37.45059 -36.37137 -34.43951 -32.85493 -32.44219 -31.76769 -30.95189 -28.69373 -27.69626 -25.54245 -25.49080 -22.91218 -22.75577 -21.21305 -20.76348 -20.23717 -18.98675 -17.70739 -17.42614 -17.04513 -16.38413 -16.22120 -15.74932 -15.43173 -14.93146 -14.81247 -14.65670 -14.15443 -13.99105 -13.91063 -13.86533 -13.80966 -13.10810 -12.89437 -12.78762 -12.58622 -12.51493 -12.20194 -12.15837 -12.00999 -11.83355 -11.69190 -11.41737 -11.35102 -11.15950 -11.05383 -11.05023 -10.97307 -10.77867 -10.18082 -9.83930 -9.76342 -9.46872 -9.33589 -9.07092 -8.59237 -8.25929 -6.52003 -6.22853 -3.93769 1.84554 2.30152 2.57449 3.01005 3.03392 3.22753 3.25618 3.28599 3.58668 4.11020 4.19456 4.28700 4.32233 4.35088 4.52102 4.74198 4.77039 4.80840 4.94712 4.95791 5.03609 5.05081 5.11722 5.12369 5.18271 5.20945 5.33463 5.42903 5.48530 5.50438 5.53876 5.61427 5.69185 5.70250 5.79703 5.82731 5.89881 5.90059 6.11488 6.15323 6.19721 6.20472 6.33072 6.44076 7.11536 7.57856 7.61402 7.87832 8.33744 8.51444 9.22395 10.84517 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033345 B = 0.001658 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.516057 B =16884.374747 C =17298.110931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.515 3.485 7 O -0.538 6.538 8 N -0.723 5.723 9 C 0.136 3.864 10 H 0.107 0.893 11 C -0.143 4.143 12 C 0.102 3.898 13 N -0.622 5.622 14 C 0.551 3.449 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.134 3.866 27 H 0.078 0.922 28 C -0.162 4.162 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.402 0.598 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.608 -18.166 -13.450 30.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.302 3.698 7 O -0.414 6.414 8 N -0.374 5.374 9 C 0.031 3.969 10 H 0.125 0.875 11 C -0.182 4.182 12 C -0.022 4.022 13 N -0.360 5.360 14 C 0.340 3.660 15 O -0.386 6.386 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C 0.030 3.970 27 H 0.096 0.904 28 C -0.220 4.220 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.237 0.763 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.310 -18.084 -14.296 30.071 hybrid contribution -0.869 0.333 1.993 2.200 sum -20.179 -17.752 -12.303 29.558 Atomic orbital electron populations 1.23866 0.95998 1.01855 1.01643 1.22959 0.96033 0.98581 0.99446 1.20803 0.98210 0.95561 0.98753 1.21286 0.97722 0.96101 0.98675 1.21719 0.98228 1.00885 0.97338 1.20755 0.80802 0.81874 0.86409 1.90720 1.67775 1.35456 1.47459 1.46008 1.41163 1.20011 1.30264 1.22052 0.88870 1.00208 0.85787 0.87541 1.23199 0.97439 1.01170 0.96420 1.22286 0.89652 0.98836 0.91430 1.48602 1.38622 1.38561 1.10251 1.20030 0.77936 0.77448 0.90619 1.90696 1.43765 1.60448 1.43705 1.23518 1.06508 1.04146 0.95608 1.85381 1.42057 1.40976 1.14875 1.22820 1.25147 1.25325 0.95158 0.90978 1.24983 0.94508 0.95354 0.98639 1.70008 1.20439 1.25307 1.34522 0.86229 0.78046 0.78411 0.82848 1.19917 1.20788 1.19938 1.21615 0.94686 0.93311 0.87420 0.90431 1.22136 0.98167 1.00760 1.00979 0.88622 0.88573 0.87352 0.91416 0.90859 0.90977 0.91009 0.88737 0.88685 0.76262 0.90180 0.89335 0.89860 0.91017 0.89297 0.89238 0.92117 0.91950 0.90399 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 14.32 29.01 0.42 -0.64 16 2 C -0.15 -0.86 9.52 -36.02 -0.34 -1.20 16 3 C -0.10 -0.46 5.66 -27.88 -0.16 -0.62 16 4 C -0.10 -0.61 4.49 -26.73 -0.12 -0.73 16 5 C -0.14 -0.72 5.70 -27.88 -0.16 -0.88 16 6 C 0.51 4.31 7.83 -10.98 -0.09 4.23 16 7 O -0.54 -6.65 15.67 5.55 0.09 -6.56 16 8 N -0.72 -5.28 5.19 -52.03 -0.27 -5.55 16 9 C 0.14 1.26 2.79 -66.10 -0.18 1.08 16 10 H 0.11 1.12 7.33 -51.93 -0.38 0.74 16 11 C -0.14 -1.27 6.77 -24.59 -0.17 -1.44 16 12 C 0.10 1.08 6.69 -2.53 -0.02 1.06 16 13 N -0.62 -8.62 3.08 -162.79 -0.50 -9.12 16 14 C 0.55 10.31 7.67 -10.98 -0.08 10.23 16 15 O -0.51 -11.40 14.94 5.56 0.08 -11.31 16 16 C -0.15 -2.97 5.16 36.01 0.19 -2.79 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.13 1.53 3.22 -66.79 -0.21 1.31 16 27 H 0.08 0.87 7.70 -51.93 -0.40 0.47 16 28 C -0.16 -1.92 9.11 37.16 0.34 -1.58 16 29 H 0.10 0.45 7.84 -52.48 -0.41 0.04 16 30 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.11 0.58 8.06 -52.48 -0.42 0.15 16 32 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 2.04 8.34 -40.82 -0.34 1.70 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.86 7.48 -51.93 -0.39 0.47 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.66 7.85 -51.92 -0.41 1.26 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 1.15 6.94 -51.93 -0.36 0.79 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 410.42 15.07 6.18 6.18 Total: -1.00 -35.48 410.42 -9.44 -44.92 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.13 Total: -0.87 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.39 Total: -4.85 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: -0.04 Total: -39.96 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.87 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.48 -9.44 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680418139.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.838 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds