Wall clock time and date at job start Sat Apr 11 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00212 * 2 1 4 4 C 1.52996 * 109.47210 * 124.99473 * 3 2 1 5 5 C 1.53003 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47431 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99902 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99785 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99501 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.78207 * 328.24205 * 9 8 6 11 11 C 1.55158 * 110.71715 * 91.48155 * 9 8 6 12 12 C 1.54904 * 101.58496 * 82.85835 * 11 9 8 13 13 N 1.47751 * 104.83985 * 37.09084 * 12 11 9 14 14 C 1.34779 * 125.81876 * 155.83199 * 13 12 11 15 15 O 1.21282 * 119.99391 * 179.90976 * 14 13 12 16 16 C 1.50698 * 120.00233 * 359.90551 * 14 13 12 17 17 S 1.80994 * 109.47101 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00099 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99644 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00003 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99762 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47356 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47012 * 119.99727 * 22 20 18 25 25 H 1.48498 * 109.47018 * 239.99579 * 22 20 18 26 26 C 1.47023 * 108.52884 * 335.75123 * 13 12 11 27 27 H 1.09000 * 109.87725 * 120.67188 * 26 13 12 28 28 C 1.52997 * 109.88230 * 241.68339 * 26 13 12 29 29 H 1.08004 * 119.99427 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00229 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00224 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46878 * 4.99702 * 3 2 1 33 33 H 1.08999 * 109.47046 * 244.99910 * 3 2 1 34 34 H 1.09003 * 109.47013 * 60.00312 * 4 3 2 35 35 H 1.08999 * 109.47473 * 300.00175 * 4 3 2 36 36 H 1.08994 * 109.46832 * 60.00068 * 5 4 3 37 37 H 1.08999 * 109.46701 * 300.00348 * 5 4 3 38 38 H 0.96990 * 119.99946 * 359.97438 * 8 6 5 39 39 H 1.09002 * 111.00062 * 200.93544 * 11 9 8 40 40 H 1.09002 * 111.00355 * 324.74112 * 11 9 8 41 41 H 1.08994 * 110.36903 * 155.84534 * 12 11 9 42 42 H 1.09003 * 110.36693 * 278.05969 * 12 11 9 43 43 H 1.09008 * 109.47238 * 300.00310 * 16 14 13 44 44 H 1.09005 * 109.47018 * 60.00332 * 16 14 13 45 45 H 0.96993 * 119.99828 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47153 * 178.28453 * 28 26 13 47 47 H 1.09001 * 109.46832 * 58.28643 * 28 26 13 48 48 H 1.09004 * 109.47261 * 298.28625 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7996 2.6584 1.1821 6 6 4.7569 2.6858 2.3456 7 8 4.8210 1.7387 3.1006 8 7 5.5419 3.7626 2.5472 9 6 6.4721 3.7894 3.6788 10 1 6.0721 3.2259 4.5217 11 6 7.8613 3.2392 3.2604 12 6 8.5085 4.4887 2.6128 13 7 8.0445 5.6247 3.4358 14 6 8.6676 6.8131 3.5626 15 8 8.1898 7.6759 4.2686 16 6 9.9578 7.0698 2.8275 17 16 10.5420 8.7419 3.1999 18 6 12.0181 8.7716 2.2382 19 1 12.3023 7.9059 1.6583 20 6 12.8162 9.9072 2.2267 21 7 12.4701 10.9622 2.9338 22 14 14.3807 9.9389 1.2065 23 1 14.5430 8.6382 0.5086 24 1 14.2961 11.0316 0.2045 25 1 15.5468 10.1720 2.0959 26 6 6.7862 5.2424 4.0930 27 1 6.9001 5.3029 5.1753 28 6 5.6580 6.1693 3.6361 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6214 1.4026 -0.9314 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 3.0945 3.4846 1.2718 37 1 4.3574 2.7563 0.2507 38 1 5.4909 4.5198 1.9433 39 1 8.4298 2.9114 4.1307 40 1 7.7595 2.4313 2.5359 41 1 9.5953 4.4148 2.6490 42 1 8.1706 4.6000 1.5825 43 1 10.7072 6.3445 3.1445 44 1 9.7900 6.9737 1.7547 45 1 13.0276 11.7558 2.9254 46 1 4.7227 5.8611 4.1036 47 1 5.5581 6.1130 2.5521 48 1 5.8892 7.1940 3.9270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680418140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:17 Heat of formation + Delta-G solvation = -62.135197 kcal Electronic energy + Delta-G solvation = -26631.705891 eV Core-core repulsion = 22812.969024 eV Total energy + Delta-G solvation = -3818.736867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79311 -39.45896 -37.50437 -36.33974 -34.24989 -32.82643 -32.45710 -31.70894 -30.99029 -28.68529 -27.57120 -25.92141 -25.51207 -22.98893 -22.84883 -21.08400 -20.45092 -20.19735 -18.98337 -17.80461 -17.46091 -17.03347 -16.47331 -16.32360 -15.60294 -15.39485 -14.86075 -14.82018 -14.53319 -14.33427 -14.07902 -13.88613 -13.74612 -13.64271 -13.45017 -12.94183 -12.82263 -12.64181 -12.52084 -12.18887 -12.00333 -11.90099 -11.73303 -11.64911 -11.44461 -11.33125 -11.13339 -11.09760 -11.06534 -11.02720 -10.77933 -10.13953 -9.83322 -9.74261 -9.40617 -9.38993 -9.10068 -8.60507 -8.26253 -6.53345 -6.24599 -3.95348 1.86483 2.33400 2.76191 2.88170 3.02317 3.19418 3.23707 3.28923 3.56507 4.12542 4.18061 4.30170 4.31714 4.36253 4.54441 4.75241 4.77374 4.83300 4.94063 4.97690 5.04763 5.07952 5.10795 5.11421 5.18689 5.22032 5.36225 5.36678 5.46693 5.50271 5.53920 5.59750 5.67275 5.72106 5.72433 5.82683 5.88422 5.91385 6.09336 6.14430 6.19626 6.21872 6.35022 6.43030 7.16315 7.56950 7.60916 7.91382 8.32589 8.51041 9.20967 10.82886 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.001810 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.766161 B =15464.059751 C =15874.453416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.099 4.099 5 C -0.143 4.143 6 C 0.514 3.486 7 O -0.540 6.540 8 N -0.721 5.721 9 C 0.137 3.863 10 H 0.109 0.891 11 C -0.142 4.142 12 C 0.100 3.900 13 N -0.624 5.624 14 C 0.551 3.449 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.129 3.871 27 H 0.088 0.912 28 C -0.161 4.161 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.404 0.596 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.459 -20.558 -5.621 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.183 4.183 6 C 0.301 3.699 7 O -0.417 6.417 8 N -0.375 5.375 9 C 0.031 3.969 10 H 0.127 0.873 11 C -0.181 4.181 12 C -0.023 4.023 13 N -0.362 5.362 14 C 0.339 3.661 15 O -0.386 6.386 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C 0.025 3.975 27 H 0.106 0.894 28 C -0.219 4.219 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.031 -19.669 -3.959 28.351 hybrid contribution 1.634 -0.612 -1.854 2.546 sum -18.397 -20.281 -5.813 27.992 Atomic orbital electron populations 1.23864 0.96001 1.01847 1.01673 1.22958 0.96031 0.98577 0.99422 1.20808 0.98231 0.95550 0.98779 1.21277 0.97704 0.96085 0.98632 1.21720 0.98296 1.00855 0.97393 1.20758 0.80696 0.82056 0.86417 1.90714 1.68539 1.35194 1.47264 1.46203 1.40523 1.20152 1.30628 1.21921 0.89550 0.95411 0.90025 0.87266 1.23197 0.95563 0.97218 1.02131 1.22351 1.00309 0.85024 0.94606 1.48725 1.24174 1.14343 1.48996 1.20010 0.85178 0.79671 0.81208 1.90701 1.66057 1.43102 1.38721 1.23516 0.96236 1.07506 1.02490 1.85397 1.27983 1.06521 1.63462 1.22899 1.09069 1.03351 1.33017 0.90896 1.24989 0.98255 0.94607 0.95688 1.70024 1.37952 1.03679 1.38586 0.86119 0.81601 0.78240 0.79550 1.19621 1.20551 1.20543 1.21725 0.85018 0.92394 0.98345 0.89448 1.22078 0.97406 1.01672 1.00769 0.88617 0.88585 0.87367 0.91409 0.90852 0.91006 0.91046 0.88766 0.88737 0.75907 0.89397 0.89545 0.90040 0.91527 0.89323 0.89379 0.92213 0.91707 0.92807 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.01 0.42 -0.69 16 2 C -0.15 -0.89 9.52 -36.02 -0.34 -1.23 16 3 C -0.10 -0.50 5.66 -27.88 -0.16 -0.66 16 4 C -0.10 -0.63 4.49 -26.73 -0.12 -0.75 16 5 C -0.14 -0.78 5.70 -27.88 -0.16 -0.94 16 6 C 0.51 4.38 7.83 -10.99 -0.09 4.29 16 7 O -0.54 -6.65 15.63 5.55 0.09 -6.57 16 8 N -0.72 -5.46 4.50 -52.03 -0.23 -5.69 16 9 C 0.14 1.22 3.18 -66.09 -0.21 1.01 16 10 H 0.11 1.05 7.55 -51.93 -0.39 0.66 16 11 C -0.14 -1.21 6.77 -24.58 -0.17 -1.38 16 12 C 0.10 1.01 6.69 -2.35 -0.02 0.99 16 13 N -0.62 -8.29 3.08 -162.76 -0.50 -8.79 16 14 C 0.55 10.09 7.66 -10.99 -0.08 10.01 16 15 O -0.51 -11.26 14.90 5.56 0.08 -11.18 16 16 C -0.15 -2.92 5.17 36.00 0.19 -2.74 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 22 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.13 1.44 3.42 -66.96 -0.23 1.21 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.16 -1.71 8.49 37.16 0.32 -1.40 16 29 H 0.10 0.48 7.84 -52.48 -0.41 0.07 16 30 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.11 0.60 8.06 -52.49 -0.42 0.17 16 32 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 2.55 6.48 -40.82 -0.26 2.28 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.82 7.50 -51.93 -0.39 0.43 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.65 7.86 -51.91 -0.41 1.24 16 44 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.49 6.22 -51.93 -0.32 0.17 16 48 H 0.08 1.11 6.89 -51.93 -0.36 0.75 16 LS Contribution 406.52 15.07 6.13 6.13 Total: -1.00 -35.00 406.52 -9.38 -44.39 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.99 Total: -0.39 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.46 Total: -5.06 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.00 Total: -39.66 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.00 -9.38 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680418140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.748 kcal (2) G-P(sol) polarization free energy of solvation -35.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds