Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 120.00212 * 2 1 4 4 C 1.52996 * 109.47210 * 124.99473 * 3 2 1 5 5 C 1.53003 * 109.47409 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47431 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99902 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99785 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99501 * 179.97438 * 8 6 5 10 10 H 1.08995 * 110.78207 * 328.24205 * 9 8 6 11 11 C 1.55158 * 110.71715 * 91.48155 * 9 8 6 12 12 C 1.54904 * 101.58496 * 82.85835 * 11 9 8 13 13 N 1.47751 * 104.83985 * 37.09084 * 12 11 9 14 14 C 1.34779 * 125.81876 * 155.83199 * 13 12 11 15 15 O 1.21282 * 119.99391 * 179.90976 * 14 13 12 16 16 C 1.50698 * 120.00233 * 359.90551 * 14 13 12 17 17 S 1.80994 * 109.47101 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00099 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99644 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00003 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99762 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47356 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47012 * 119.99727 * 22 20 18 25 25 H 1.48498 * 109.47018 * 239.99579 * 22 20 18 26 26 C 1.47023 * 108.52884 * 335.75123 * 13 12 11 27 27 H 1.09000 * 109.87725 * 120.67188 * 26 13 12 28 28 C 1.52997 * 109.88230 * 241.68339 * 26 13 12 29 29 H 1.08004 * 119.99427 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00229 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00224 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46878 * 4.99702 * 3 2 1 33 33 H 1.08999 * 109.47046 * 244.99910 * 3 2 1 34 34 H 1.09003 * 109.47013 * 60.00312 * 4 3 2 35 35 H 1.08999 * 109.47473 * 300.00175 * 4 3 2 36 36 H 1.08994 * 109.46832 * 60.00068 * 5 4 3 37 37 H 1.08999 * 109.46701 * 300.00348 * 5 4 3 38 38 H 0.96990 * 119.99946 * 359.97438 * 8 6 5 39 39 H 1.09002 * 111.00062 * 200.93544 * 11 9 8 40 40 H 1.09002 * 111.00355 * 324.74112 * 11 9 8 41 41 H 1.08994 * 110.36903 * 155.84534 * 12 11 9 42 42 H 1.09003 * 110.36693 * 278.05969 * 12 11 9 43 43 H 1.09008 * 109.47238 * 300.00310 * 16 14 13 44 44 H 1.09005 * 109.47018 * 60.00332 * 16 14 13 45 45 H 0.96993 * 119.99828 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47153 * 178.28453 * 28 26 13 47 47 H 1.09001 * 109.46832 * 58.28643 * 28 26 13 48 48 H 1.09004 * 109.47261 * 298.28625 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7996 2.6584 1.1821 6 6 4.7569 2.6858 2.3456 7 8 4.8210 1.7387 3.1006 8 7 5.5419 3.7626 2.5472 9 6 6.4721 3.7894 3.6788 10 1 6.0721 3.2259 4.5217 11 6 7.8613 3.2392 3.2604 12 6 8.5085 4.4887 2.6128 13 7 8.0445 5.6247 3.4358 14 6 8.6676 6.8131 3.5626 15 8 8.1898 7.6759 4.2686 16 6 9.9578 7.0698 2.8275 17 16 10.5420 8.7419 3.1999 18 6 12.0181 8.7716 2.2382 19 1 12.3023 7.9059 1.6583 20 6 12.8162 9.9072 2.2267 21 7 12.4701 10.9622 2.9338 22 14 14.3807 9.9389 1.2065 23 1 14.5430 8.6382 0.5086 24 1 14.2961 11.0316 0.2045 25 1 15.5468 10.1720 2.0959 26 6 6.7862 5.2424 4.0930 27 1 6.9001 5.3029 5.1753 28 6 5.6580 6.1693 3.6361 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6214 1.4026 -0.9314 34 1 3.7400 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 3.0945 3.4846 1.2718 37 1 4.3574 2.7563 0.2507 38 1 5.4909 4.5198 1.9433 39 1 8.4298 2.9114 4.1307 40 1 7.7595 2.4313 2.5359 41 1 9.5953 4.4148 2.6490 42 1 8.1706 4.6000 1.5825 43 1 10.7072 6.3445 3.1445 44 1 9.7900 6.9737 1.7547 45 1 13.0276 11.7558 2.9254 46 1 4.7227 5.8611 4.1036 47 1 5.5581 6.1130 2.5521 48 1 5.8892 7.1940 3.9270 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680418140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -84.215289 kcal Electronic energy + Delta-G solvation = -26632.663355 eV Core-core repulsion = 22812.969024 eV Total energy + Delta-G solvation = -3819.694331 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70353 -40.44366 -38.65005 -36.81985 -35.15948 -34.58680 -33.35622 -32.63377 -32.01413 -29.99988 -28.15868 -27.64917 -26.73232 -23.91827 -23.55311 -21.79215 -21.16184 -20.64542 -20.32841 -19.47033 -18.36697 -17.93695 -17.65453 -16.88585 -16.85205 -16.64581 -16.26645 -16.04184 -15.67996 -15.21559 -15.11459 -14.86684 -14.59719 -14.38618 -14.36416 -14.21564 -14.01152 -13.75136 -13.30495 -13.18800 -13.15134 -12.91608 -12.72119 -12.61900 -12.54224 -12.52042 -12.37955 -12.24315 -11.94893 -11.74034 -11.70589 -11.58512 -11.15980 -10.88687 -10.84647 -10.27471 -10.16571 -10.10228 -9.74802 -8.67183 -8.35058 -6.13087 1.23643 1.41335 1.43822 1.44855 1.56517 1.57737 1.68932 2.02663 2.20847 2.27113 2.99431 3.18368 3.36093 3.50887 3.80644 3.87529 3.89503 3.95031 4.11286 4.11981 4.19192 4.27102 4.32730 4.37232 4.41782 4.46188 4.55881 4.63023 4.68860 4.72865 4.77613 4.82494 4.92938 4.96730 4.98491 5.02693 5.10137 5.20747 5.27096 5.39020 5.41965 5.43098 5.52402 5.80959 5.93262 6.19760 6.36194 6.55714 7.06583 7.12812 7.28168 8.74372 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.001810 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.766161 B =15464.059751 C =15874.453416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.095 4.095 5 C -0.136 4.136 6 C 0.514 3.486 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.148 3.852 10 H 0.106 0.894 11 C -0.132 4.132 12 C 0.094 3.906 13 N -0.612 5.612 14 C 0.550 3.450 15 O -0.559 6.559 16 C -0.121 4.121 17 S -0.149 6.149 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.275 1.275 26 C 0.127 3.873 27 H 0.076 0.924 28 C -0.155 4.155 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.413 0.587 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.498 -22.384 -7.931 30.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.303 3.697 7 O -0.461 6.461 8 N -0.366 5.366 9 C 0.041 3.959 10 H 0.124 0.876 11 C -0.171 4.171 12 C -0.028 4.028 13 N -0.348 5.348 14 C 0.338 3.662 15 O -0.437 6.437 16 C -0.272 4.272 17 S 0.078 5.922 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 C 0.023 3.977 27 H 0.094 0.906 28 C -0.213 4.213 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.252 0.748 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.092 -21.537 -6.299 30.120 hybrid contribution 1.531 -0.173 -1.103 1.894 sum -18.561 -21.710 -7.402 29.506 Atomic orbital electron populations 1.24012 0.96091 1.02411 1.01335 1.23110 0.96337 0.99074 0.99765 1.20779 0.98083 0.95365 0.98615 1.21197 0.97534 0.96306 0.98275 1.21753 0.98052 1.00878 0.96896 1.21281 0.80557 0.81301 0.86575 1.90708 1.69763 1.36733 1.48904 1.46114 1.39962 1.20362 1.30132 1.21719 0.90226 0.93343 0.90581 0.87641 1.23154 0.94799 0.96666 1.02450 1.22655 1.00848 0.84112 0.95191 1.48595 1.24334 1.13405 1.48454 1.19686 0.84851 0.80763 0.80859 1.90690 1.67069 1.45128 1.40818 1.23318 0.97389 1.02654 1.03819 1.85574 1.29026 1.13035 1.64532 1.23228 1.09192 1.03921 1.32982 0.89945 1.26107 1.02073 0.94000 0.96837 1.70185 1.39656 1.04534 1.40380 0.84918 0.76502 0.78917 0.77689 1.17993 1.19895 1.20028 1.21852 0.84137 0.93983 0.97724 0.90590 1.22009 0.97897 0.99316 1.02091 0.88044 0.88174 0.87514 0.90625 0.89720 0.92373 0.92963 0.86716 0.86347 0.74827 0.89119 0.88303 0.89644 0.89420 0.87772 0.87496 0.91996 0.89868 0.90972 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 14.32 67.78 0.97 -1.05 16 2 C -0.16 -1.75 9.52 25.65 0.24 -1.50 16 3 C -0.09 -0.76 5.66 29.85 0.17 -0.59 16 4 C -0.09 -1.06 4.49 30.59 0.14 -0.92 16 5 C -0.14 -1.08 5.70 29.85 0.17 -0.91 16 6 C 0.51 7.53 7.83 87.66 0.69 8.22 16 7 O -0.58 -13.55 15.63 -3.05 -0.05 -13.60 16 8 N -0.71 -8.73 4.50 -436.91 -1.97 -10.70 16 9 C 0.15 2.33 3.18 46.18 0.15 2.47 16 10 H 0.11 1.86 7.55 -2.39 -0.02 1.85 16 11 C -0.13 -1.89 6.77 31.98 0.22 -1.67 16 12 C 0.09 1.61 6.69 86.79 0.58 2.19 16 13 N -0.61 -15.39 3.08 -787.25 -2.42 -17.81 16 14 C 0.55 20.08 7.66 87.66 0.67 20.75 16 15 O -0.56 -25.41 14.90 -3.04 -0.05 -25.46 16 16 C -0.12 -4.73 5.17 71.24 0.37 -4.36 16 17 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 18 C -0.55 -30.78 9.50 67.95 0.65 -30.13 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 20 C 0.01 0.82 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.51 13.22 21.65 0.29 -55.22 16 22 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.13 2.67 3.42 45.34 0.15 2.82 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 C -0.15 -3.13 8.49 71.98 0.61 -2.52 16 29 H 0.10 0.87 7.84 -2.91 -0.02 0.85 16 30 H 0.10 0.87 8.06 -2.92 -0.02 0.85 16 31 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.08 0.52 7.79 -2.39 -0.02 0.50 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 35 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.41 3.73 6.48 -92.72 -0.60 3.12 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.46 7.50 -2.39 -0.02 1.44 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 3.74 7.86 -2.39 -0.02 3.72 16 44 H 0.11 3.76 8.14 -2.39 -0.02 3.75 16 45 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.07 1.16 6.22 -2.39 -0.01 1.14 16 48 H 0.04 1.22 6.89 -2.38 -0.02 1.20 16 Total: -1.00 -79.26 406.52 3.25 -76.01 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.34 Total: 16.94 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.24 Total: -5.92 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -4.10 Total: -83.74 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.09 Total: -39.05 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -79.26 3.25 -76.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680418140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.204 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds