Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.87279 * 2 1 4 4 C 1.54321 * 109.88173 * 121.01084 * 2 1 3 5 5 C 1.55157 * 103.10033 * 97.28990 * 4 2 1 6 6 H 1.09001 * 111.00741 * 277.51995 * 5 4 2 7 7 N 1.46506 * 111.00374 * 153.66359 * 5 4 2 8 8 C 1.34774 * 119.99806 * 155.00501 * 7 5 4 9 9 O 1.21282 * 120.00225 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99807 * 180.02562 * 8 7 5 11 11 C 1.53001 * 112.85007 * 50.33126 * 10 8 7 12 12 C 1.53778 * 113.61280 * 279.13203 * 10 8 7 13 13 C 1.53963 * 87.01786 * 220.04666 * 12 10 8 14 14 C 1.53775 * 87.10763 * 25.36585 * 13 12 10 15 15 C 1.55392 * 101.36576 * 35.49711 * 5 4 2 16 16 N 1.47019 * 110.01048 * 238.90068 * 2 1 3 17 17 C 1.34777 * 125.65068 * 59.41524 * 16 2 1 18 18 O 1.21277 * 119.99926 * 359.97438 * 17 16 2 19 19 C 1.50704 * 119.99914 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.46742 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99571 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00533 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00133 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99725 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00494 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46805 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47452 * 119.99278 * 25 23 21 28 28 H 1.48496 * 109.46984 * 239.99710 * 25 23 21 29 29 H 1.09003 * 109.46934 * 298.98645 * 1 2 3 30 30 H 1.09004 * 109.47312 * 58.98458 * 1 2 3 31 31 H 1.09000 * 109.46935 * 178.98527 * 1 2 3 32 32 H 1.09002 * 110.72109 * 215.74371 * 4 2 1 33 33 H 1.09003 * 110.72356 * 338.84196 * 4 2 1 34 34 H 0.96996 * 119.99506 * 335.00056 * 7 5 4 35 35 H 1.08998 * 109.47522 * 69.66457 * 11 10 8 36 36 H 1.08999 * 109.47072 * 189.66862 * 11 10 8 37 37 H 1.08997 * 109.47099 * 309.66541 * 11 10 8 38 38 H 1.08998 * 113.61899 * 334.57148 * 12 10 8 39 39 H 1.09002 * 113.61135 * 105.47159 * 12 10 8 40 40 H 1.08997 * 113.53512 * 270.81359 * 13 12 10 41 41 H 1.09001 * 113.73851 * 139.94714 * 13 12 10 42 42 H 1.09008 * 113.61468 * 220.08718 * 14 13 12 43 43 H 1.09000 * 113.69260 * 89.20168 * 14 13 12 44 44 H 1.08999 * 110.34334 * 204.17153 * 15 5 4 45 45 H 1.08998 * 110.44545 * 81.91304 * 15 5 4 46 46 H 1.09001 * 109.46884 * 299.99653 * 19 17 16 47 47 H 1.08994 * 109.47114 * 59.99465 * 19 17 16 48 48 H 0.96999 * 120.00248 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 6 2.3548 -2.1692 0.6991 6 1 1.4488 -2.7744 0.6665 7 7 3.3951 -2.8272 1.4935 8 6 3.4585 -4.1727 1.5386 9 8 2.6541 -4.8388 0.9220 10 6 4.5283 -4.8496 2.3561 11 6 4.6102 -4.3146 3.7872 12 6 5.8909 -4.9237 1.6472 13 6 6.0241 -6.3444 2.2255 14 6 4.4877 -6.3847 2.2738 15 6 2.8619 -1.8473 -0.7341 16 7 2.0331 -0.7135 -1.1829 17 6 1.7783 -0.3860 -2.4652 18 8 1.0786 0.5715 -2.7189 19 6 2.3620 -1.2102 -3.5837 20 16 1.8421 -0.5219 -5.1750 21 6 2.6439 -1.6451 -6.2706 22 1 3.2378 -2.4553 -5.8740 23 6 2.5132 -1.4879 -7.6435 24 7 1.7898 -0.5001 -8.1269 25 14 3.3637 -2.6782 -8.8051 26 1 4.1100 -3.6913 -8.0165 27 1 2.3481 -3.3572 -9.6491 28 1 4.3098 -1.9319 -9.6730 29 1 -0.3633 0.4980 0.8990 30 1 -0.3634 0.5295 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 2.9642 -0.2791 1.6203 33 1 1.2919 -0.7858 2.0214 34 1 4.0383 -2.2945 1.9868 35 1 3.7249 -4.6247 4.3423 36 1 5.5014 -4.7117 4.2731 37 1 4.6626 -3.2261 3.7657 38 1 5.8194 -4.8997 0.5599 39 1 6.6260 -4.2209 2.0396 40 1 6.4929 -6.3718 3.2091 41 1 6.4581 -7.0625 1.5296 42 1 4.0913 -6.8597 3.1714 43 1 4.0304 -6.7610 1.3588 44 1 2.7165 -2.7061 -1.3893 45 1 3.9137 -1.5624 -0.7108 46 1 3.4499 -1.1925 -3.5186 47 1 2.0098 -2.2382 -3.4995 48 1 1.6981 -0.3905 -9.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680497539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -56.959623 kcal Electronic energy + Delta-G solvation = -27537.972821 eV Core-core repulsion = 23719.460385 eV Total energy + Delta-G solvation = -3818.512437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06374 -40.00920 -38.22187 -37.14888 -34.54195 -32.41115 -32.20015 -30.75516 -29.30472 -28.68362 -26.09076 -26.01006 -25.48230 -25.31600 -22.96893 -21.44895 -21.02924 -19.22149 -18.90176 -17.73531 -17.57410 -16.92551 -16.32646 -15.65807 -15.46334 -15.42344 -14.87862 -14.78576 -14.59918 -14.17459 -14.06787 -13.90772 -13.51509 -13.21865 -13.12228 -13.03926 -12.82936 -12.68537 -12.59720 -12.53326 -12.14123 -11.80134 -11.75436 -11.59492 -11.53079 -11.31551 -11.05539 -10.99280 -10.92788 -10.85184 -10.73774 -10.71140 -9.88220 -9.79072 -9.56300 -9.24714 -9.05596 -8.53107 -8.21536 -6.48320 -6.20094 -3.90383 2.31068 2.62330 3.00469 3.07736 3.23119 3.28406 3.33314 3.64059 3.97400 4.05877 4.13274 4.22141 4.30819 4.34520 4.38557 4.56192 4.66410 4.90295 4.99670 5.02545 5.06278 5.08821 5.15187 5.17148 5.31813 5.34620 5.38849 5.39652 5.45842 5.52844 5.56573 5.56784 5.61237 5.62037 5.66424 5.73495 5.78269 5.91648 6.00770 6.02294 6.14339 6.16922 6.28862 6.53634 7.15031 7.61826 7.65642 7.92218 8.37526 8.56622 9.25460 10.87441 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002801 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.676502 B = 9993.409948 C =12217.632716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.078 0.922 4 C -0.134 4.134 5 C 0.132 3.868 6 H 0.108 0.892 7 N -0.718 5.718 8 C 0.529 3.471 9 O -0.531 6.531 10 C -0.112 4.112 11 C -0.126 4.126 12 C -0.122 4.122 13 C -0.141 4.141 14 C -0.114 4.114 15 C 0.092 3.908 16 N -0.621 5.621 17 C 0.552 3.448 18 O -0.511 6.511 19 C -0.148 4.148 20 S -0.060 6.060 21 C -0.533 4.533 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.401 0.599 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.056 -6.934 28.549 30.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.172 4.172 5 C 0.026 3.974 6 H 0.126 0.874 7 N -0.370 5.370 8 C 0.315 3.685 9 O -0.406 6.406 10 C -0.115 4.115 11 C -0.184 4.184 12 C -0.160 4.160 13 C -0.179 4.179 14 C -0.152 4.152 15 C -0.033 4.033 16 N -0.359 5.359 17 C 0.340 3.660 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.331 -5.873 27.464 28.790 hybrid contribution 1.711 -1.567 -0.257 2.335 sum 8.042 -7.441 27.206 29.330 Atomic orbital electron populations 1.22181 0.94486 1.02531 1.03159 1.21419 0.95033 0.96341 0.83671 0.90432 1.23007 1.02412 0.94175 0.97604 1.22173 0.91896 0.93463 0.89855 0.87376 1.45887 1.33603 1.06711 1.50810 1.20496 0.84977 0.81907 0.81084 1.90733 1.41056 1.64222 1.44594 1.22187 0.95164 0.97762 0.96387 1.21590 1.03018 1.00893 0.92859 1.22971 0.94286 0.98045 1.00665 1.22858 0.96602 0.96934 1.01464 1.22882 0.96229 0.92446 1.03655 1.22698 0.95113 0.90045 0.95466 1.48490 1.51895 1.30559 1.04945 1.19997 0.80019 0.84673 0.81267 1.90690 1.37172 1.28232 1.82404 1.23527 1.03689 1.02611 1.00003 1.85358 1.67070 1.40347 0.90560 1.22901 1.36176 1.16005 0.93086 0.90906 1.24994 0.95283 0.95983 0.97343 1.70030 1.37435 1.29366 1.13492 0.86114 0.79090 0.80210 0.80086 1.19599 1.20540 1.20571 0.91949 0.90444 0.92498 0.90087 0.89251 0.76346 0.91656 0.91148 0.91976 0.89461 0.90522 0.89908 0.90860 0.90977 0.88605 0.89924 0.91195 0.89417 0.89288 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.06 37.16 0.34 -1.66 16 2 C 0.14 1.62 3.49 -66.95 -0.23 1.38 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.02 6.13 -24.90 -0.15 -1.17 16 5 C 0.13 1.24 3.45 -65.52 -0.23 1.02 16 6 H 0.11 1.24 7.54 -51.93 -0.39 0.85 16 7 N -0.72 -5.38 5.10 -51.47 -0.26 -5.64 16 8 C 0.53 5.13 6.91 -10.99 -0.08 5.05 16 9 O -0.53 -7.53 15.55 5.56 0.09 -7.44 16 10 C -0.11 -0.76 1.25 -154.85 -0.19 -0.95 16 11 C -0.13 -0.55 8.98 37.16 0.33 -0.21 16 12 C -0.12 -0.74 7.21 -25.82 -0.19 -0.92 16 13 C -0.14 -0.80 7.74 -25.83 -0.20 -1.00 16 14 C -0.11 -0.84 6.99 -25.92 -0.18 -1.02 16 15 C 0.09 1.09 6.41 -2.26 -0.01 1.08 16 16 N -0.62 -9.11 3.09 -162.71 -0.50 -9.61 16 17 C 0.55 10.85 7.65 -10.98 -0.08 10.77 16 18 O -0.51 -11.78 14.77 5.56 0.08 -11.69 16 19 C -0.15 -3.15 5.16 36.01 0.19 -2.97 16 20 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 21 C -0.53 -15.51 9.50 30.94 0.29 -15.21 16 22 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 25 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.19 6.77 -51.93 -0.35 0.84 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.46 8.00 -51.93 -0.42 0.05 16 33 H 0.09 0.57 7.83 -51.93 -0.41 0.16 16 34 H 0.40 1.87 7.55 -40.82 -0.31 1.56 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.23 7.34 -51.93 -0.38 -0.15 16 37 H 0.06 0.19 7.11 -51.93 -0.37 -0.18 16 38 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 40 H 0.08 0.35 7.64 -51.93 -0.40 -0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.10 -51.92 -0.42 0.05 16 43 H 0.10 0.91 7.45 -51.93 -0.39 0.53 16 44 H 0.08 1.11 7.47 -51.93 -0.39 0.73 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 47 H 0.09 1.82 7.85 -51.92 -0.41 1.41 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -36.32 398.54 -9.55 -45.88 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.97 Total: -0.82 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.49 Total: -3.79 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.03 Total: -41.02 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.32 -9.55 -45.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.084 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds