Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.87279 * 2 1 4 4 C 1.54321 * 109.88173 * 121.01084 * 2 1 3 5 5 C 1.55157 * 103.10033 * 97.28990 * 4 2 1 6 6 H 1.09001 * 111.00741 * 277.51995 * 5 4 2 7 7 N 1.46506 * 111.00374 * 153.66359 * 5 4 2 8 8 C 1.34774 * 119.99806 * 155.00501 * 7 5 4 9 9 O 1.21282 * 120.00225 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99807 * 180.02562 * 8 7 5 11 11 C 1.53001 * 112.85007 * 50.33126 * 10 8 7 12 12 C 1.53778 * 113.61280 * 279.13203 * 10 8 7 13 13 C 1.53963 * 87.01786 * 220.04666 * 12 10 8 14 14 C 1.53775 * 87.10763 * 25.36585 * 13 12 10 15 15 C 1.55392 * 101.36576 * 35.49711 * 5 4 2 16 16 N 1.47019 * 110.01048 * 238.90068 * 2 1 3 17 17 C 1.34777 * 125.65068 * 59.41524 * 16 2 1 18 18 O 1.21277 * 119.99926 * 359.97438 * 17 16 2 19 19 C 1.50704 * 119.99914 * 180.02562 * 17 16 2 20 20 S 1.81003 * 109.46742 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99571 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00533 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00133 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99725 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00494 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46805 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47452 * 119.99278 * 25 23 21 28 28 H 1.48496 * 109.46984 * 239.99710 * 25 23 21 29 29 H 1.09003 * 109.46934 * 298.98645 * 1 2 3 30 30 H 1.09004 * 109.47312 * 58.98458 * 1 2 3 31 31 H 1.09000 * 109.46935 * 178.98527 * 1 2 3 32 32 H 1.09002 * 110.72109 * 215.74371 * 4 2 1 33 33 H 1.09003 * 110.72356 * 338.84196 * 4 2 1 34 34 H 0.96996 * 119.99506 * 335.00056 * 7 5 4 35 35 H 1.08998 * 109.47522 * 69.66457 * 11 10 8 36 36 H 1.08999 * 109.47072 * 189.66862 * 11 10 8 37 37 H 1.08997 * 109.47099 * 309.66541 * 11 10 8 38 38 H 1.08998 * 113.61899 * 334.57148 * 12 10 8 39 39 H 1.09002 * 113.61135 * 105.47159 * 12 10 8 40 40 H 1.08997 * 113.53512 * 270.81359 * 13 12 10 41 41 H 1.09001 * 113.73851 * 139.94714 * 13 12 10 42 42 H 1.09008 * 113.61468 * 220.08718 * 14 13 12 43 43 H 1.09000 * 113.69260 * 89.20168 * 14 13 12 44 44 H 1.08999 * 110.34334 * 204.17153 * 15 5 4 45 45 H 1.08998 * 110.44545 * 81.91304 * 15 5 4 46 46 H 1.09001 * 109.46884 * 299.99653 * 19 17 16 47 47 H 1.08994 * 109.47114 * 59.99465 * 19 17 16 48 48 H 0.96999 * 120.00248 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 6 2.3548 -2.1692 0.6991 6 1 1.4488 -2.7744 0.6665 7 7 3.3951 -2.8272 1.4935 8 6 3.4585 -4.1727 1.5386 9 8 2.6541 -4.8388 0.9220 10 6 4.5283 -4.8496 2.3561 11 6 4.6102 -4.3146 3.7872 12 6 5.8909 -4.9237 1.6472 13 6 6.0241 -6.3444 2.2255 14 6 4.4877 -6.3847 2.2738 15 6 2.8619 -1.8473 -0.7341 16 7 2.0331 -0.7135 -1.1829 17 6 1.7783 -0.3860 -2.4652 18 8 1.0786 0.5715 -2.7189 19 6 2.3620 -1.2102 -3.5837 20 16 1.8421 -0.5219 -5.1750 21 6 2.6439 -1.6451 -6.2706 22 1 3.2378 -2.4553 -5.8740 23 6 2.5132 -1.4879 -7.6435 24 7 1.7898 -0.5001 -8.1269 25 14 3.3637 -2.6782 -8.8051 26 1 4.1100 -3.6913 -8.0165 27 1 2.3481 -3.3572 -9.6491 28 1 4.3098 -1.9319 -9.6730 29 1 -0.3633 0.4980 0.8990 30 1 -0.3634 0.5295 -0.8808 31 1 -0.3633 -1.0275 -0.0182 32 1 2.9642 -0.2791 1.6203 33 1 1.2919 -0.7858 2.0214 34 1 4.0383 -2.2945 1.9868 35 1 3.7249 -4.6247 4.3423 36 1 5.5014 -4.7117 4.2731 37 1 4.6626 -3.2261 3.7657 38 1 5.8194 -4.8997 0.5599 39 1 6.6260 -4.2209 2.0396 40 1 6.4929 -6.3718 3.2091 41 1 6.4581 -7.0625 1.5296 42 1 4.0913 -6.8597 3.1714 43 1 4.0304 -6.7610 1.3588 44 1 2.7165 -2.7061 -1.3893 45 1 3.9137 -1.5624 -0.7108 46 1 3.4499 -1.1925 -3.5186 47 1 2.0098 -2.2382 -3.4995 48 1 1.6981 -0.3905 -9.0863 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680497539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -81.649089 kcal Electronic energy + Delta-G solvation = -27539.043437 eV Core-core repulsion = 23719.460385 eV Total energy + Delta-G solvation = -3819.583052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82225 -41.11205 -39.16337 -38.22962 -35.46079 -34.62938 -33.41824 -31.47611 -30.35497 -29.82470 -27.71307 -26.93851 -26.60364 -25.91492 -23.96766 -22.31631 -21.82597 -20.48422 -19.67356 -19.58031 -18.32043 -18.08841 -17.43183 -16.93128 -16.75141 -16.60755 -16.20645 -15.99127 -15.68843 -15.55725 -14.94476 -14.72551 -14.53250 -14.43637 -14.35442 -14.10701 -13.79627 -13.68795 -13.26413 -13.21541 -13.19135 -13.16328 -13.08193 -12.94014 -12.62397 -12.49812 -12.22958 -12.17155 -12.09748 -11.75984 -11.72035 -11.40894 -11.19538 -11.19353 -10.98636 -10.60416 -10.35069 -10.23433 -9.76761 -8.72504 -8.38963 -6.17819 1.18141 1.38349 1.39725 1.49124 1.53501 1.57218 1.85327 2.22665 2.26017 2.94966 3.17351 3.35874 3.42629 3.47042 3.59102 3.77857 3.81429 3.90302 3.93233 4.02999 4.07814 4.13584 4.18921 4.33772 4.37499 4.52737 4.59860 4.64710 4.70458 4.72901 4.79405 4.86601 4.90088 4.90656 4.97736 5.04537 5.07146 5.11112 5.22880 5.25986 5.31589 5.37321 5.39540 5.47547 5.55698 6.15643 6.28752 6.52700 7.02066 7.06233 7.23763 8.70703 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010702 B = 0.002801 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.676502 B = 9993.409948 C =12217.632716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 H 0.080 0.920 4 C -0.112 4.112 5 C 0.141 3.859 6 H 0.086 0.914 7 N -0.699 5.699 8 C 0.524 3.476 9 O -0.584 6.584 10 C -0.106 4.106 11 C -0.123 4.123 12 C -0.120 4.120 13 C -0.132 4.132 14 C -0.127 4.127 15 C 0.085 3.915 16 N -0.611 5.611 17 C 0.550 3.450 18 O -0.554 6.554 19 C -0.123 4.123 20 S -0.142 6.142 21 C -0.548 4.548 22 H 0.078 0.922 23 C 0.015 3.985 24 N -0.910 5.910 25 Si 1.000 3.000 26 H -0.259 1.259 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.421 0.579 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.095 0.905 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -7.555 31.672 34.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.098 0.902 4 C -0.150 4.150 5 C 0.034 3.966 6 H 0.104 0.896 7 N -0.352 5.352 8 C 0.312 3.688 9 O -0.463 6.463 10 C -0.109 4.109 11 C -0.181 4.181 12 C -0.158 4.158 13 C -0.169 4.169 14 C -0.165 4.165 15 C -0.039 4.039 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.432 6.432 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.696 4.696 22 H 0.096 0.904 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.195 1.195 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.259 0.741 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.113 0.887 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.948 -6.487 30.667 32.597 hybrid contribution 0.886 -1.400 -1.116 1.998 sum 9.834 -7.887 29.551 32.128 Atomic orbital electron populations 1.22151 0.94988 1.01984 1.02915 1.21770 0.94811 0.96928 0.83833 0.90161 1.22982 1.04540 0.91678 0.95768 1.21912 0.91461 0.94512 0.88740 0.89564 1.45701 1.33294 1.06209 1.49959 1.21132 0.84829 0.82291 0.80542 1.90719 1.43272 1.65450 1.46858 1.22272 0.94223 0.96725 0.97650 1.21637 1.03692 1.02128 0.90599 1.22963 0.94294 0.98963 0.99531 1.22869 0.94988 0.96532 1.02543 1.22893 0.97761 0.93411 1.02433 1.22930 0.95862 0.88328 0.96774 1.48381 1.51041 1.31044 1.04164 1.19628 0.79907 0.84073 0.82639 1.90674 1.39166 1.29965 1.83375 1.23330 1.04499 1.02595 0.97024 1.85470 1.68390 1.42269 0.95325 1.23200 1.36430 1.16172 0.93790 0.90357 1.26135 0.95799 0.97894 0.99195 1.70181 1.38866 1.31370 1.14173 0.84895 0.77983 0.77643 0.77365 1.18320 1.19762 1.19491 0.88525 0.94473 0.93010 0.86681 0.86781 0.74054 0.92070 0.89423 0.90026 0.91486 0.88029 0.87594 0.91295 0.90322 0.91798 0.92018 0.89060 0.87881 0.88693 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.06 71.98 0.65 -3.15 16 2 C 0.13 2.77 3.49 45.34 0.16 2.93 16 3 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 4 C -0.11 -1.25 6.13 31.78 0.19 -1.06 16 5 C 0.14 2.35 3.45 46.55 0.16 2.51 16 6 H 0.09 1.91 7.54 -2.39 -0.02 1.89 16 7 N -0.70 -8.49 5.10 -435.16 -2.22 -10.71 16 8 C 0.52 9.51 6.91 87.66 0.61 10.11 16 9 O -0.58 -16.95 15.55 -3.03 -0.05 -16.99 16 10 C -0.11 -1.21 1.25 -52.40 -0.07 -1.27 16 11 C -0.12 -0.59 8.98 71.98 0.65 0.05 16 12 C -0.12 -1.17 7.21 31.18 0.22 -0.94 16 13 C -0.13 -1.22 7.74 31.18 0.24 -0.98 16 14 C -0.13 -1.80 6.99 31.12 0.22 -1.58 16 15 C 0.09 1.93 6.41 87.02 0.56 2.49 16 16 N -0.61 -17.63 3.09 -787.08 -2.43 -20.06 16 17 C 0.55 22.22 7.65 87.66 0.67 22.89 16 18 O -0.55 -26.74 14.77 -3.02 -0.04 -26.78 16 19 C -0.12 -5.42 5.16 71.24 0.37 -5.05 16 20 S -0.14 -8.22 20.57 -56.49 -1.16 -9.38 16 21 C -0.55 -32.57 9.50 67.95 0.65 -31.93 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.86 5.49 84.86 0.47 1.32 16 24 N -0.91 -56.95 13.22 21.65 0.29 -56.66 16 25 Si 1.00 44.89 29.55 68.60 2.03 46.91 16 26 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.18 6.77 -2.39 -0.02 1.16 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 0.62 8.00 -2.39 -0.02 0.60 16 33 H 0.11 0.86 7.83 -2.39 -0.02 0.85 16 34 H 0.42 1.97 7.55 -92.71 -0.70 1.27 16 35 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.17 7.34 -2.39 -0.02 0.16 16 37 H 0.08 0.09 7.11 -2.39 -0.02 0.07 16 38 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 39 H 0.10 0.50 8.10 -2.39 -0.02 0.49 16 40 H 0.11 0.52 7.64 -2.39 -0.02 0.50 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.96 8.10 -2.38 -0.02 0.94 16 43 H 0.06 1.31 7.45 -2.39 -0.02 1.29 16 44 H 0.06 1.68 7.47 -2.39 -0.02 1.66 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.10 4.15 8.14 -2.40 -0.02 4.13 16 47 H 0.09 4.01 7.85 -2.40 -0.02 3.99 16 48 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -85.58 398.54 2.41 -83.17 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.25 Total: 14.16 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.74 Total: -3.66 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.36 Total: -87.42 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.09 Total: -43.78 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -85.58 2.41 -83.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680497539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.522 kcal (2) G-P(sol) polarization free energy of solvation -85.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds