Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00180 * 2 1 4 4 C 1.52996 * 109.47124 * 124.72130 * 3 2 1 5 5 C 1.50703 * 109.47124 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99952 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99867 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49931 * 34.99968 * 8 7 5 10 10 C 1.53046 * 109.49536 * 274.93653 * 8 7 5 11 11 C 1.53035 * 109.53835 * 301.41327 * 10 8 7 12 12 C 1.53191 * 109.31682 * 298.63529 * 11 10 8 13 13 N 1.46927 * 108.77223 * 54.63276 * 12 11 10 14 14 C 1.34783 * 120.62917 * 126.41359 * 13 12 11 15 15 O 1.21276 * 120.00139 * 174.28206 * 14 13 12 16 16 C 1.50702 * 119.99727 * 354.28100 * 14 13 12 17 17 S 1.81005 * 109.46945 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99712 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00791 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99946 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00426 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47223 * 59.99589 * 22 20 18 24 24 H 1.48504 * 109.47508 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46865 * 299.99904 * 22 20 18 26 26 C 1.46999 * 118.75792 * 306.39613 * 13 12 11 27 27 H 1.09001 * 109.57791 * 293.82901 * 26 13 12 28 28 C 1.52998 * 109.62785 * 173.37751 * 26 13 12 29 29 H 1.07996 * 119.99916 * 180.27879 * 1 2 3 30 30 H 1.07996 * 119.99862 * 0.27134 * 1 2 3 31 31 H 1.08005 * 119.99815 * 179.72207 * 2 1 3 32 32 H 1.08994 * 109.47275 * 244.72853 * 3 2 1 33 33 H 1.09001 * 109.46595 * 4.72532 * 3 2 1 34 34 H 1.09003 * 109.47873 * 300.00443 * 4 3 2 35 35 H 1.09001 * 109.47056 * 60.00685 * 4 3 2 36 36 H 0.96994 * 119.99552 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.45727 * 61.43491 * 10 8 7 38 38 H 1.09004 * 109.45541 * 181.39198 * 10 8 7 39 39 H 1.09003 * 109.49782 * 58.58966 * 11 10 8 40 40 H 1.08998 * 109.49469 * 178.68160 * 11 10 8 41 41 H 1.08997 * 109.58580 * 174.42004 * 12 11 10 42 42 H 1.08996 * 109.58445 * 294.85558 * 12 11 10 43 43 H 1.08998 * 109.47336 * 299.99945 * 16 14 13 44 44 H 1.08998 * 109.47030 * 60.00178 * 16 14 13 45 45 H 0.97006 * 120.00106 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47580 * 306.28682 * 28 26 13 47 47 H 1.09009 * 109.47104 * 66.28472 * 28 26 13 48 48 H 1.09002 * 109.47186 * 186.28282 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0301 1.3359 1.1856 5 6 3.7841 2.6408 1.1852 6 8 3.5692 3.4651 0.3220 7 7 4.6966 2.8921 2.1449 8 6 5.4291 4.1608 2.1448 9 1 4.7765 4.9578 1.7883 10 6 6.6467 4.0475 1.2245 11 6 7.5468 2.9068 1.7046 12 6 8.0394 3.2125 3.1225 13 7 6.8757 3.4660 3.9830 14 6 6.7087 2.7808 5.1316 15 8 5.8025 3.0699 5.8839 16 6 7.6483 1.6556 5.4811 17 16 7.1666 0.9395 7.0722 18 6 8.3963 -0.3125 7.2290 19 1 9.1408 -0.4381 6.4567 20 6 8.4076 -1.1383 8.3446 21 7 7.5000 -0.9857 9.2856 22 14 9.7109 -2.4662 8.5106 23 1 11.0576 -1.8405 8.5137 24 1 9.5058 -3.2049 9.7825 25 1 9.6056 -3.4086 7.3677 26 6 5.8970 4.4812 3.5679 27 1 6.3626 5.4665 3.5863 28 6 4.6987 4.4589 4.5189 29 1 -0.5400 -0.9353 0.0046 30 1 -0.5400 0.9353 -0.0044 31 1 1.8500 -0.9354 0.0045 32 1 2.6252 1.4004 -0.9292 33 1 1.3582 2.1318 0.0847 34 1 2.4685 1.2406 2.1150 35 1 3.7354 0.5092 1.1009 36 1 4.8681 2.2330 2.8355 37 1 6.3146 3.8442 0.2064 38 1 7.2049 4.9836 1.2441 39 1 6.9818 1.9747 1.7087 40 1 8.4016 2.8116 1.0351 41 1 8.5990 2.3597 3.5067 42 1 8.6795 4.0945 3.1047 43 1 7.6005 0.8888 4.7078 44 1 8.6660 2.0399 5.5492 45 1 7.5081 -1.5625 10.0655 46 1 4.3002 3.4461 4.5778 47 1 5.0156 4.7828 5.5103 48 1 3.9266 5.1321 4.1463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680650466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = -51.948026 kcal Electronic energy + Delta-G solvation = -28003.172526 eV Core-core repulsion = 24184.877409 eV Total energy + Delta-G solvation = -3818.295118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92968 -39.49057 -37.39365 -35.58904 -34.48006 -32.83217 -32.47173 -32.12087 -30.69879 -28.81301 -27.30768 -25.52410 -25.08680 -24.23175 -22.24369 -21.24896 -20.23340 -20.01900 -18.87195 -17.66718 -17.31280 -16.50671 -16.36765 -16.08245 -15.66145 -15.25619 -15.00094 -14.84645 -14.55372 -14.33172 -14.09707 -13.81748 -13.60787 -13.40499 -13.14836 -13.01348 -12.75448 -12.61936 -12.37771 -12.22683 -12.09295 -11.91350 -11.48081 -11.30853 -11.25609 -11.17487 -11.10286 -11.07693 -10.98681 -10.88948 -10.80355 -10.01054 -9.85864 -9.56345 -9.23342 -9.10522 -8.79664 -8.52293 -8.28952 -6.55662 -6.26370 -3.97382 2.01682 2.52922 2.80821 2.94329 3.07660 3.19653 3.21911 3.25468 3.52203 4.15730 4.41060 4.51343 4.55936 4.67504 4.70256 4.76970 4.88709 4.94367 5.05192 5.08864 5.08980 5.14369 5.21103 5.25769 5.37168 5.46723 5.51538 5.52863 5.59056 5.61229 5.73107 5.74279 5.79016 5.82713 5.89079 5.91395 5.98333 6.05221 6.16631 6.32851 6.38818 6.44148 6.52106 6.73365 7.37341 7.49053 7.54586 8.10473 8.29969 8.49232 9.19061 10.80856 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.002973 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.281510 B = 9415.634808 C =10845.876032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.076 4.076 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.547 6.547 7 N -0.717 5.717 8 C 0.135 3.865 9 H 0.096 0.904 10 C -0.130 4.130 11 C -0.134 4.134 12 C 0.107 3.893 13 N -0.619 5.619 14 C 0.533 3.467 15 O -0.505 6.505 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.075 3.925 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.139 3.861 27 H 0.082 0.918 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.404 0.596 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 7.349 -18.775 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C -0.114 4.114 4 C -0.179 4.179 5 C 0.302 3.698 6 O -0.425 6.425 7 N -0.369 5.369 8 C 0.029 3.971 9 H 0.114 0.886 10 C -0.168 4.168 11 C -0.172 4.172 12 C -0.016 4.016 13 N -0.356 5.356 14 C 0.321 3.679 15 O -0.380 6.380 16 C -0.304 4.304 17 S 0.168 5.832 18 C -0.685 4.685 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C 0.035 3.965 27 H 0.100 0.900 28 C -0.195 4.195 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.239 0.761 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.309 8.316 -18.071 20.869 hybrid contribution 2.180 -1.615 -0.474 2.754 sum -4.129 6.700 -18.545 20.146 Atomic orbital electron populations 1.23879 0.95988 1.01884 1.01210 1.22991 0.96133 0.98416 0.99825 1.20474 0.97755 0.95396 0.97783 1.21650 0.99221 0.95648 1.01426 1.20708 0.79182 0.88932 0.80931 1.90678 1.66210 1.48345 1.37240 1.46037 1.40526 1.19976 1.30319 1.21398 0.93192 0.87192 0.95327 0.88574 1.21900 0.96039 0.99251 0.99658 1.21882 0.99888 0.99262 0.96160 1.21764 0.87658 1.02202 0.90023 1.48234 1.24875 1.39928 1.22599 1.20340 0.85325 0.82283 0.79936 1.90754 1.32304 1.66221 1.48688 1.23616 1.01430 0.98604 1.06736 1.85372 1.41921 1.40197 1.15747 1.22805 1.16575 1.19625 1.09458 0.91050 1.24981 0.96404 0.97359 0.94750 1.70002 1.33165 1.38109 1.08959 0.86241 0.80992 0.80698 0.77679 1.19944 1.20798 1.19929 1.21516 0.90462 0.91605 0.92894 0.90045 1.22190 0.95017 1.02742 0.99524 0.88483 0.88567 0.87247 0.90358 0.90809 0.88560 0.88699 0.76119 0.91113 0.90861 0.91352 0.90680 0.89067 0.91350 0.89431 0.89409 0.92100 0.91275 0.89729 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.32 29.01 0.42 -1.10 16 2 C -0.16 -1.28 9.52 -36.03 -0.34 -1.62 16 3 C -0.08 -0.69 4.95 -27.88 -0.14 -0.83 16 4 C -0.14 -1.25 5.68 -27.88 -0.16 -1.41 16 5 C 0.52 5.80 7.80 -10.98 -0.09 5.71 16 6 O -0.55 -7.76 15.65 5.56 0.09 -7.68 16 7 N -0.72 -7.55 3.54 -53.69 -0.19 -7.74 16 8 C 0.13 1.37 2.32 -67.81 -0.16 1.21 16 9 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 10 C -0.13 -1.15 5.58 -26.69 -0.15 -1.30 16 11 C -0.13 -1.13 5.93 -26.61 -0.16 -1.29 16 12 C 0.11 1.03 6.35 -3.71 -0.02 1.01 16 13 N -0.62 -7.64 2.63 -165.17 -0.43 -8.07 16 14 C 0.53 8.94 7.52 -10.98 -0.08 8.85 16 15 O -0.51 -10.03 11.44 5.56 0.06 -9.96 16 16 C -0.15 -2.86 4.51 36.01 0.16 -2.70 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 18 C -0.54 -14.73 9.50 30.94 0.29 -14.43 16 19 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.50 13.22 55.49 0.73 -24.77 16 22 Si 0.92 20.86 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.14 1.54 3.20 -67.56 -0.22 1.33 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.14 -1.80 7.28 37.16 0.27 -1.53 16 29 H 0.10 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 31 H 0.11 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.40 4.41 7.79 -40.82 -0.32 4.09 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 7.53 -51.93 -0.39 0.25 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.92 5.93 -51.93 -0.31 0.61 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.51 7.92 -51.92 -0.41 1.10 16 44 H 0.09 1.55 7.71 -51.92 -0.40 1.15 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 1.02 6.10 -51.93 -0.32 0.70 16 47 H 0.08 1.30 6.58 -51.92 -0.34 0.96 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -32.77 396.06 -9.36 -42.13 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.89 Total: 4.15 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -0.46 Total: -6.12 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.11 Total: -40.58 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.15 Total: -17.64 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.77 -9.36 -42.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680650466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.823 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds