Wall clock time and date at job start Sat Apr 11 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00180 * 2 1 4 4 C 1.52996 * 109.47124 * 124.72130 * 3 2 1 5 5 C 1.50703 * 109.47124 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99952 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00034 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99867 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49931 * 34.99968 * 8 7 5 10 10 C 1.53046 * 109.49536 * 274.93653 * 8 7 5 11 11 C 1.53035 * 109.53835 * 301.41327 * 10 8 7 12 12 C 1.53191 * 109.31682 * 298.63529 * 11 10 8 13 13 N 1.46927 * 108.77223 * 54.63276 * 12 11 10 14 14 C 1.34783 * 120.62917 * 126.41359 * 13 12 11 15 15 O 1.21276 * 120.00139 * 174.28206 * 14 13 12 16 16 C 1.50702 * 119.99727 * 354.28100 * 14 13 12 17 17 S 1.81005 * 109.46945 * 179.97438 * 16 14 13 18 18 C 1.76195 * 99.99712 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00791 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99946 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99855 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00426 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47223 * 59.99589 * 22 20 18 24 24 H 1.48504 * 109.47508 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46865 * 299.99904 * 22 20 18 26 26 C 1.46999 * 118.75792 * 306.39613 * 13 12 11 27 27 H 1.09001 * 109.57791 * 293.82901 * 26 13 12 28 28 C 1.52998 * 109.62785 * 173.37751 * 26 13 12 29 29 H 1.07996 * 119.99916 * 180.27879 * 1 2 3 30 30 H 1.07996 * 119.99862 * 0.27134 * 1 2 3 31 31 H 1.08005 * 119.99815 * 179.72207 * 2 1 3 32 32 H 1.08994 * 109.47275 * 244.72853 * 3 2 1 33 33 H 1.09001 * 109.46595 * 4.72532 * 3 2 1 34 34 H 1.09003 * 109.47873 * 300.00443 * 4 3 2 35 35 H 1.09001 * 109.47056 * 60.00685 * 4 3 2 36 36 H 0.96994 * 119.99552 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.45727 * 61.43491 * 10 8 7 38 38 H 1.09004 * 109.45541 * 181.39198 * 10 8 7 39 39 H 1.09003 * 109.49782 * 58.58966 * 11 10 8 40 40 H 1.08998 * 109.49469 * 178.68160 * 11 10 8 41 41 H 1.08997 * 109.58580 * 174.42004 * 12 11 10 42 42 H 1.08996 * 109.58445 * 294.85558 * 12 11 10 43 43 H 1.08998 * 109.47336 * 299.99945 * 16 14 13 44 44 H 1.08998 * 109.47030 * 60.00178 * 16 14 13 45 45 H 0.97006 * 120.00106 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47580 * 306.28682 * 28 26 13 47 47 H 1.09009 * 109.47104 * 66.28472 * 28 26 13 48 48 H 1.09002 * 109.47186 * 186.28282 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0301 1.3359 1.1856 5 6 3.7841 2.6408 1.1852 6 8 3.5692 3.4651 0.3220 7 7 4.6966 2.8921 2.1449 8 6 5.4291 4.1608 2.1448 9 1 4.7765 4.9578 1.7883 10 6 6.6467 4.0475 1.2245 11 6 7.5468 2.9068 1.7046 12 6 8.0394 3.2125 3.1225 13 7 6.8757 3.4660 3.9830 14 6 6.7087 2.7808 5.1316 15 8 5.8025 3.0699 5.8839 16 6 7.6483 1.6556 5.4811 17 16 7.1666 0.9395 7.0722 18 6 8.3963 -0.3125 7.2290 19 1 9.1408 -0.4381 6.4567 20 6 8.4076 -1.1383 8.3446 21 7 7.5000 -0.9857 9.2856 22 14 9.7109 -2.4662 8.5106 23 1 11.0576 -1.8405 8.5137 24 1 9.5058 -3.2049 9.7825 25 1 9.6056 -3.4086 7.3677 26 6 5.8970 4.4812 3.5679 27 1 6.3626 5.4665 3.5863 28 6 4.6987 4.4589 4.5189 29 1 -0.5400 -0.9353 0.0046 30 1 -0.5400 0.9353 -0.0044 31 1 1.8500 -0.9354 0.0045 32 1 2.6252 1.4004 -0.9292 33 1 1.3582 2.1318 0.0847 34 1 2.4685 1.2406 2.1150 35 1 3.7354 0.5092 1.1009 36 1 4.8681 2.2330 2.8355 37 1 6.3146 3.8442 0.2064 38 1 7.2049 4.9836 1.2441 39 1 6.9818 1.9747 1.7087 40 1 8.4016 2.8116 1.0351 41 1 8.5990 2.3597 3.5067 42 1 8.6795 4.0945 3.1047 43 1 7.6005 0.8888 4.7078 44 1 8.6660 2.0399 5.5492 45 1 7.5081 -1.5625 10.0655 46 1 4.3002 3.4461 4.5778 47 1 5.0156 4.7828 5.5103 48 1 3.9266 5.1321 4.1463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680650466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:01 Heat of formation + Delta-G solvation = -71.289978 kcal Electronic energy + Delta-G solvation = -28004.011256 eV Core-core repulsion = 24184.877409 eV Total energy + Delta-G solvation = -3819.133848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94500 -40.53347 -38.47705 -36.31230 -35.46506 -34.56493 -33.75833 -33.10395 -31.51516 -30.08940 -28.29887 -27.60429 -25.90505 -25.11811 -23.15924 -22.15462 -21.22335 -20.67949 -20.14306 -19.31659 -18.23922 -17.68981 -17.39948 -16.98111 -16.85732 -16.70158 -16.24959 -16.00793 -15.61918 -15.34911 -15.16529 -14.89583 -14.69367 -14.52832 -14.29894 -14.21824 -13.80520 -13.55152 -13.43264 -13.24335 -13.11834 -13.03731 -12.96492 -12.85488 -12.59933 -12.46109 -12.06085 -12.02484 -11.91126 -11.83176 -11.72412 -11.67708 -11.11040 -10.92240 -10.24324 -10.22002 -10.18162 -10.04902 -9.55878 -8.62587 -8.32722 -6.09406 1.27837 1.37886 1.44253 1.47270 1.55949 1.60970 1.65795 2.06084 2.25777 2.30031 3.01592 3.28016 3.53490 3.65236 3.76037 3.89574 3.94783 3.97638 4.05279 4.17230 4.24952 4.29162 4.32050 4.36959 4.43947 4.46485 4.51939 4.66026 4.67479 4.73468 4.80772 4.86079 4.91831 5.03143 5.05628 5.07222 5.16222 5.19752 5.28019 5.37261 5.43652 5.51097 5.68840 5.75311 5.88875 6.21257 6.33592 6.48803 7.09152 7.21468 7.22426 8.75790 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.002973 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.281510 B = 9415.634808 C =10845.876032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C -0.072 4.072 4 C -0.136 4.136 5 C 0.515 3.485 6 O -0.578 6.578 7 N -0.714 5.714 8 C 0.137 3.863 9 H 0.091 0.909 10 C -0.123 4.123 11 C -0.126 4.126 12 C 0.101 3.899 13 N -0.604 5.604 14 C 0.534 3.466 15 O -0.544 6.544 16 C -0.127 4.127 17 S -0.145 6.145 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.994 3.006 23 H -0.263 1.263 24 H -0.281 1.281 25 H -0.262 1.262 26 C 0.143 3.857 27 H 0.105 0.895 28 C -0.130 4.130 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.402 0.598 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.270 0.730 46 H 0.048 0.952 47 H 0.058 0.942 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 7.048 -20.788 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.180 4.180 3 C -0.110 4.110 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.458 6.458 7 N -0.364 5.364 8 C 0.032 3.968 9 H 0.109 0.891 10 C -0.162 4.162 11 C -0.164 4.164 12 C -0.021 4.021 13 N -0.340 5.340 14 C 0.322 3.678 15 O -0.421 6.421 16 C -0.278 4.278 17 S 0.082 5.918 18 C -0.693 4.693 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.816 3.184 23 H -0.188 1.188 24 H -0.206 1.206 25 H -0.186 1.186 26 C 0.040 3.960 27 H 0.122 0.878 28 C -0.187 4.187 29 H 0.127 0.873 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.428 8.031 -20.125 22.116 hybrid contribution 1.560 -1.408 0.059 2.102 sum -2.868 6.623 -20.066 21.325 Atomic orbital electron populations 1.24041 0.96058 1.02492 1.00559 1.23038 0.96312 0.98311 1.00384 1.20397 0.97481 0.95560 0.97515 1.21668 0.99353 0.94952 1.01566 1.21049 0.78962 0.89269 0.80390 1.90663 1.67190 1.49493 1.38481 1.46068 1.40359 1.20050 1.29963 1.21408 0.93812 0.86879 0.94744 0.89060 1.21858 0.95377 1.00419 0.98518 1.21839 1.00457 0.98528 0.95599 1.22051 0.86718 1.03371 0.89969 1.48160 1.25640 1.38876 1.21289 1.20033 0.84540 0.82243 0.80995 1.90768 1.33720 1.67245 1.50397 1.23437 1.02406 0.99469 1.02492 1.85525 1.43261 1.41316 1.21664 1.23156 1.16624 1.19692 1.09828 0.90062 1.26063 0.98717 0.99916 0.94287 1.70170 1.35379 1.39463 1.09710 0.85071 0.77997 0.77470 0.77899 1.18792 1.20622 1.18613 1.21607 0.89543 0.92133 0.92732 0.87773 1.22012 0.96263 1.01641 0.98801 0.87270 0.88665 0.86117 0.91006 0.92119 0.88113 0.87035 0.76244 0.91976 0.88863 0.92357 0.88414 0.89145 0.88932 0.87671 0.87946 0.92085 0.93301 0.92321 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 14.32 67.78 0.97 -1.92 16 2 C -0.16 -2.51 9.52 25.65 0.24 -2.27 16 3 C -0.07 -1.28 4.95 29.85 0.15 -1.13 16 4 C -0.14 -2.33 5.68 29.85 0.17 -2.16 16 5 C 0.52 11.26 7.80 87.66 0.68 11.95 16 6 O -0.58 -16.19 15.65 -3.03 -0.05 -16.24 16 7 N -0.71 -14.32 3.54 -442.15 -1.57 -15.89 16 8 C 0.14 2.53 2.32 45.07 0.10 2.64 16 9 H 0.09 1.85 7.58 -2.39 -0.02 1.83 16 10 C -0.12 -1.81 5.58 30.62 0.17 -1.64 16 11 C -0.13 -1.71 5.93 30.67 0.18 -1.53 16 12 C 0.10 1.61 6.35 86.36 0.55 2.16 16 13 N -0.60 -13.73 2.63 -794.87 -2.09 -15.82 16 14 C 0.53 17.61 7.52 87.66 0.66 18.27 16 15 O -0.54 -22.11 11.44 -3.02 -0.03 -22.14 16 16 C -0.13 -4.63 4.51 71.24 0.32 -4.31 16 17 S -0.14 -7.63 20.57 -56.49 -1.16 -8.79 16 18 C -0.55 -29.95 9.50 67.95 0.65 -29.31 16 19 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 20 C 0.02 0.83 5.49 84.86 0.47 1.30 16 21 N -0.91 -54.66 13.22 21.65 0.29 -54.37 16 22 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 C 0.14 2.92 3.20 44.96 0.14 3.06 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 C -0.13 -3.40 7.28 71.98 0.52 -2.87 16 29 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.10 1.40 7.84 -2.91 -0.02 1.38 16 31 H 0.12 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.06 1.22 7.75 -2.39 -0.02 1.20 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.40 8.47 7.79 -92.71 -0.72 7.75 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.06 0.94 7.53 -2.39 -0.02 0.92 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.51 5.93 -2.39 -0.01 1.50 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 3.45 7.92 -2.40 -0.02 3.44 16 44 H 0.10 3.44 7.71 -2.40 -0.02 3.42 16 45 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 46 H 0.05 1.47 6.10 -2.39 -0.01 1.46 16 47 H 0.06 1.85 6.58 -2.38 -0.02 1.84 16 48 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.37 396.06 3.62 -69.76 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.22 Total: 26.84 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 5.98 Total: -7.75 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.37 Total: -86.08 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.08 Total: -38.38 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.16 Total: -8.79 kcal Total: -73.37 3.62 -69.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680650466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.534 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds