Wall clock time and date at job start Sat Apr 11 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 120.00054 * 2 1 4 4 C 1.52997 * 109.47542 * 125.00075 * 3 2 1 5 5 C 1.50690 * 109.47601 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00188 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00359 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00077 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.50036 * 324.93544 * 8 7 5 10 10 C 1.53041 * 109.49821 * 85.00222 * 8 7 5 11 11 C 1.53045 * 109.53638 * 58.58534 * 10 8 7 12 12 C 1.53189 * 109.31355 * 61.36502 * 11 10 8 13 13 N 1.46923 * 108.77713 * 305.36678 * 12 11 10 14 14 C 1.34777 * 120.63031 * 233.58747 * 13 12 11 15 15 O 1.21280 * 119.99909 * 174.92911 * 14 13 12 16 16 C 1.50696 * 119.99800 * 354.92993 * 14 13 12 17 17 S 1.81008 * 109.47037 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99814 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00356 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99647 * 179.71970 * 18 17 16 21 21 N 1.31635 * 120.00018 * 0.27881 * 20 18 17 22 22 Si 1.86801 * 119.99956 * 180.27786 * 20 18 17 23 23 H 1.48491 * 109.46991 * 90.00298 * 22 20 18 24 24 H 1.48503 * 109.47013 * 210.00308 * 22 20 18 25 25 H 1.48501 * 109.46985 * 329.99921 * 22 20 18 26 26 C 1.46931 * 118.73864 * 53.85719 * 13 12 11 27 27 H 1.08996 * 109.58406 * 65.93296 * 26 13 12 28 28 C 1.52997 * 109.58496 * 186.35430 * 26 13 12 29 29 H 1.07999 * 120.00401 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00137 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99609 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47232 * 4.99497 * 3 2 1 33 33 H 1.09002 * 109.46790 * 244.99990 * 3 2 1 34 34 H 1.09001 * 109.47329 * 59.99481 * 4 3 2 35 35 H 1.09002 * 109.47009 * 299.99782 * 4 3 2 36 36 H 0.96999 * 119.99599 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.46027 * 298.56853 * 10 8 7 38 38 H 1.08994 * 109.45475 * 178.59814 * 10 8 7 39 39 H 1.09005 * 109.49281 * 301.41332 * 11 10 8 40 40 H 1.09003 * 109.49707 * 181.32169 * 11 10 8 41 41 H 1.08999 * 109.58781 * 185.57735 * 12 11 10 42 42 H 1.08999 * 109.70183 * 65.21980 * 12 11 10 43 43 H 1.08989 * 109.47724 * 60.00404 * 16 14 13 44 44 H 1.08998 * 109.46856 * 299.99507 * 16 14 13 45 45 H 0.97000 * 119.99832 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.47284 * 55.66107 * 28 26 13 47 47 H 1.09003 * 109.46942 * 175.65965 * 28 26 13 48 48 H 1.09002 * 109.47427 * 295.65819 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6378 1.1812 6 8 3.5704 3.4643 0.3209 7 7 4.7054 2.8869 2.1376 8 6 5.4380 4.1556 2.1375 9 1 5.6212 4.4699 1.1100 10 6 4.6112 5.2229 2.8584 11 6 4.3249 4.7672 4.2911 12 6 5.6490 4.5927 5.0414 13 7 6.5084 3.6780 4.2777 14 6 7.0427 2.5881 4.8634 15 8 7.6742 1.7920 4.2012 16 6 6.8554 2.3585 6.3409 17 16 7.6847 0.8235 6.8229 18 6 7.3157 0.8043 8.5456 19 1 6.7326 1.6018 8.9819 20 6 7.7690 -0.2391 9.3409 21 7 8.4792 -1.2115 8.8090 22 14 7.3712 -0.2635 11.1659 23 1 6.0907 -0.9830 11.3838 24 1 8.4598 -0.9566 11.9006 25 1 7.2471 1.1300 11.6641 26 6 6.7792 3.9773 2.8649 27 1 7.3629 4.8949 2.7912 28 6 7.5565 2.8197 2.2353 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6212 1.4025 -0.9314 34 1 3.7399 0.5065 1.0921 35 1 2.4773 1.2357 2.1130 36 1 4.8800 2.2261 2.8259 37 1 3.6697 5.3714 2.3296 38 1 5.1675 6.1599 2.8797 39 1 3.7903 3.8174 4.2708 40 1 3.7163 5.5170 4.7966 41 1 5.4568 4.1742 6.0294 42 1 6.1435 5.5587 5.1437 43 1 5.7915 2.2828 6.5649 44 1 7.2851 3.1927 6.8955 45 1 8.7963 -1.9404 9.3649 46 1 7.0017 1.8916 2.3737 47 1 7.6894 3.0082 1.1699 48 1 8.5323 2.7344 2.7136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680650469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:14 Heat of formation + Delta-G solvation = -51.025788 kcal Electronic energy + Delta-G solvation = -27963.885582 eV Core-core repulsion = 24145.630456 eV Total energy + Delta-G solvation = -3818.255126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92359 -39.49139 -37.37880 -35.59560 -34.48010 -32.82882 -32.47042 -32.11732 -30.70444 -28.81017 -27.29897 -25.52349 -25.08744 -24.22337 -22.24144 -21.25088 -20.23312 -20.02673 -18.87898 -17.64336 -17.32741 -16.47820 -16.37445 -16.08038 -15.70915 -15.15669 -15.06964 -14.84759 -14.57360 -14.38611 -14.09155 -13.70332 -13.57271 -13.51631 -13.14065 -12.89889 -12.78056 -12.62073 -12.36502 -12.27735 -12.07497 -11.98493 -11.50024 -11.30387 -11.26432 -11.19594 -11.09979 -11.08105 -10.95418 -10.86071 -10.79796 -10.00717 -9.84925 -9.57267 -9.22730 -9.11138 -8.77450 -8.50502 -8.28602 -6.55506 -6.26556 -3.97328 2.00733 2.53330 2.80902 2.94096 3.08241 3.18642 3.22222 3.26652 3.52635 4.15656 4.40491 4.51531 4.55904 4.67320 4.69462 4.78003 4.87646 4.94271 5.06246 5.07689 5.08948 5.14531 5.20794 5.25833 5.37567 5.46438 5.51174 5.53996 5.58163 5.61015 5.72260 5.74640 5.79058 5.83934 5.89032 5.91149 5.98380 6.06176 6.17934 6.33378 6.38193 6.44556 6.51163 6.73997 7.38356 7.48687 7.55002 8.11111 8.30266 8.48778 9.19105 10.80746 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.002847 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.063557 B = 9832.364782 C =11107.102571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C -0.077 4.077 4 C -0.139 4.139 5 C 0.515 3.485 6 O -0.547 6.547 7 N -0.716 5.716 8 C 0.135 3.865 9 H 0.096 0.904 10 C -0.130 4.130 11 C -0.133 4.133 12 C 0.107 3.893 13 N -0.619 5.619 14 C 0.533 3.467 15 O -0.506 6.506 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.139 3.861 27 H 0.082 0.918 28 C -0.136 4.136 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.404 0.596 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.269 0.731 46 H 0.076 0.924 47 H 0.039 0.961 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 10.699 -13.838 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C -0.114 4.114 4 C -0.179 4.179 5 C 0.302 3.698 6 O -0.425 6.425 7 N -0.368 5.368 8 C 0.029 3.971 9 H 0.114 0.886 10 C -0.169 4.169 11 C -0.171 4.171 12 C -0.017 4.017 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.381 6.381 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.035 3.965 27 H 0.100 0.900 28 C -0.193 4.193 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.600 9.937 -15.399 21.171 hybrid contribution -0.956 0.661 2.470 2.730 sum -11.556 10.598 -12.929 20.322 Atomic orbital electron populations 1.23870 0.95981 1.01846 1.01392 1.23001 0.96122 0.98475 0.99661 1.20477 0.97686 0.95334 0.97933 1.21644 0.99188 0.95815 1.01278 1.20702 0.79484 0.88847 0.80735 1.90679 1.65838 1.48433 1.37565 1.46024 1.40455 1.19703 1.30603 1.21461 0.91133 0.84126 1.00406 0.88632 1.21901 1.01015 0.98094 0.95843 1.21877 0.97187 1.02315 0.95753 1.21757 0.90225 0.93970 0.95701 1.48203 1.50851 1.25965 1.10574 1.20341 0.78151 0.79926 0.89423 1.90767 1.39522 1.44136 1.63632 1.23620 1.05372 1.07158 0.94245 1.85361 1.68868 1.20556 1.08516 1.22845 1.40211 1.11842 0.93467 0.91000 1.24988 0.94552 0.94604 0.99391 1.70013 1.33648 1.10291 1.36286 0.86181 0.78207 0.78374 0.82829 1.20259 1.20739 1.19700 1.21618 0.94281 1.00140 0.80464 0.90028 1.22210 1.01843 0.97449 0.97797 0.88492 0.88613 0.87193 0.90873 0.90267 0.88530 0.88749 0.76048 0.91130 0.90863 0.91368 0.90662 0.89104 0.91383 0.89448 0.89365 0.92163 0.90539 0.94197 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 14.32 29.01 0.42 -1.07 16 2 C -0.15 -1.26 9.52 -36.03 -0.34 -1.60 16 3 C -0.08 -0.69 4.95 -27.89 -0.14 -0.83 16 4 C -0.14 -1.24 5.68 -27.89 -0.16 -1.40 16 5 C 0.52 5.81 7.79 -10.99 -0.09 5.72 16 6 O -0.55 -7.77 15.65 5.56 0.09 -7.69 16 7 N -0.72 -7.58 3.53 -53.47 -0.19 -7.77 16 8 C 0.13 1.37 2.33 -67.59 -0.16 1.21 16 9 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 10 C -0.13 -1.15 5.57 -26.69 -0.15 -1.30 16 11 C -0.13 -1.14 5.93 -26.61 -0.16 -1.29 16 12 C 0.11 1.03 6.32 -3.71 -0.02 1.01 16 13 N -0.62 -7.61 2.62 -164.97 -0.43 -8.04 16 14 C 0.53 8.91 7.62 -10.99 -0.08 8.83 16 15 O -0.51 -9.94 11.26 5.56 0.06 -9.87 16 16 C -0.15 -2.87 4.56 36.00 0.16 -2.71 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -14.73 9.50 30.94 0.29 -14.43 16 19 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 22 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.14 1.54 3.22 -67.37 -0.22 1.32 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 C -0.14 -1.77 7.32 37.16 0.27 -1.50 16 29 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 31 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 33 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.46 7.80 -40.82 -0.32 4.14 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.92 5.96 -51.93 -0.31 0.61 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.51 7.48 -51.92 -0.39 1.12 16 44 H 0.09 1.57 8.11 -51.92 -0.42 1.15 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.08 1.13 5.85 -51.93 -0.30 0.82 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 1.20 6.77 -51.93 -0.35 0.84 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -32.70 396.00 -9.35 -42.06 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.88 Total: 4.10 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.46 Total: -6.10 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.11 Total: -40.59 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.15 Total: -17.56 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.70 -9.35 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680650469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.970 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds