Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50693 * 120.00054 * 2 1 4 4 C 1.52997 * 109.47542 * 125.00075 * 3 2 1 5 5 C 1.50690 * 109.47601 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00188 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00359 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00077 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.50036 * 324.93544 * 8 7 5 10 10 C 1.53041 * 109.49821 * 85.00222 * 8 7 5 11 11 C 1.53045 * 109.53638 * 58.58534 * 10 8 7 12 12 C 1.53189 * 109.31355 * 61.36502 * 11 10 8 13 13 N 1.46923 * 108.77713 * 305.36678 * 12 11 10 14 14 C 1.34777 * 120.63031 * 233.58747 * 13 12 11 15 15 O 1.21280 * 119.99909 * 174.92911 * 14 13 12 16 16 C 1.50696 * 119.99800 * 354.92993 * 14 13 12 17 17 S 1.81008 * 109.47037 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99814 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00356 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99647 * 179.71970 * 18 17 16 21 21 N 1.31635 * 120.00018 * 0.27881 * 20 18 17 22 22 Si 1.86801 * 119.99956 * 180.27786 * 20 18 17 23 23 H 1.48491 * 109.46991 * 90.00298 * 22 20 18 24 24 H 1.48503 * 109.47013 * 210.00308 * 22 20 18 25 25 H 1.48501 * 109.46985 * 329.99921 * 22 20 18 26 26 C 1.46931 * 118.73864 * 53.85719 * 13 12 11 27 27 H 1.08996 * 109.58406 * 65.93296 * 26 13 12 28 28 C 1.52997 * 109.58496 * 186.35430 * 26 13 12 29 29 H 1.07999 * 120.00401 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00137 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99609 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47232 * 4.99497 * 3 2 1 33 33 H 1.09002 * 109.46790 * 244.99990 * 3 2 1 34 34 H 1.09001 * 109.47329 * 59.99481 * 4 3 2 35 35 H 1.09002 * 109.47009 * 299.99782 * 4 3 2 36 36 H 0.96999 * 119.99599 * 0.02562 * 7 5 4 37 37 H 1.09001 * 109.46027 * 298.56853 * 10 8 7 38 38 H 1.08994 * 109.45475 * 178.59814 * 10 8 7 39 39 H 1.09005 * 109.49281 * 301.41332 * 11 10 8 40 40 H 1.09003 * 109.49707 * 181.32169 * 11 10 8 41 41 H 1.08999 * 109.58781 * 185.57735 * 12 11 10 42 42 H 1.08999 * 109.70183 * 65.21980 * 12 11 10 43 43 H 1.08989 * 109.47724 * 60.00404 * 16 14 13 44 44 H 1.08998 * 109.46856 * 299.99507 * 16 14 13 45 45 H 0.97000 * 119.99832 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.47284 * 55.66107 * 28 26 13 47 47 H 1.09003 * 109.46942 * 175.65965 * 28 26 13 48 48 H 1.09002 * 109.47427 * 295.65819 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6378 1.1812 6 8 3.5704 3.4643 0.3209 7 7 4.7054 2.8869 2.1376 8 6 5.4380 4.1556 2.1375 9 1 5.6212 4.4699 1.1100 10 6 4.6112 5.2229 2.8584 11 6 4.3249 4.7672 4.2911 12 6 5.6490 4.5927 5.0414 13 7 6.5084 3.6780 4.2777 14 6 7.0427 2.5881 4.8634 15 8 7.6742 1.7920 4.2012 16 6 6.8554 2.3585 6.3409 17 16 7.6847 0.8235 6.8229 18 6 7.3157 0.8043 8.5456 19 1 6.7326 1.6018 8.9819 20 6 7.7690 -0.2391 9.3409 21 7 8.4792 -1.2115 8.8090 22 14 7.3712 -0.2635 11.1659 23 1 6.0907 -0.9830 11.3838 24 1 8.4598 -0.9566 11.9006 25 1 7.2471 1.1300 11.6641 26 6 6.7792 3.9773 2.8649 27 1 7.3629 4.8949 2.7912 28 6 7.5565 2.8197 2.2353 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6212 1.4025 -0.9314 34 1 3.7399 0.5065 1.0921 35 1 2.4773 1.2357 2.1130 36 1 4.8800 2.2261 2.8259 37 1 3.6697 5.3714 2.3296 38 1 5.1675 6.1599 2.8797 39 1 3.7903 3.8174 4.2708 40 1 3.7163 5.5170 4.7966 41 1 5.4568 4.1742 6.0294 42 1 6.1435 5.5587 5.1437 43 1 5.7915 2.2828 6.5649 44 1 7.2851 3.1927 6.8955 45 1 8.7963 -1.9404 9.3649 46 1 7.0017 1.8916 2.3737 47 1 7.6894 3.0082 1.1699 48 1 8.5323 2.7344 2.7136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680650469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -70.262972 kcal Electronic energy + Delta-G solvation = -27964.719769 eV Core-core repulsion = 24145.630456 eV Total energy + Delta-G solvation = -3819.089313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94002 -40.53123 -38.45758 -36.31392 -35.46568 -34.56743 -33.75355 -33.10037 -31.51681 -30.08338 -28.29403 -27.60609 -25.90285 -25.10800 -23.15766 -22.15295 -21.22823 -20.67952 -20.15456 -19.30250 -18.23686 -17.67760 -17.39410 -16.88387 -16.86588 -16.82310 -16.26131 -15.91923 -15.74952 -15.30706 -15.21167 -14.75604 -14.65647 -14.57052 -14.31680 -14.26034 -13.75558 -13.52317 -13.40690 -13.33249 -13.12347 -13.03990 -12.96644 -12.88478 -12.58324 -12.46982 -12.05881 -12.03379 -11.91013 -11.82031 -11.70886 -11.65881 -11.12684 -10.91968 -10.23313 -10.22148 -10.16922 -10.03731 -9.53976 -8.62666 -8.33258 -6.09672 1.27838 1.37970 1.42662 1.47290 1.56836 1.61275 1.65801 2.06423 2.26105 2.29749 3.01148 3.27782 3.52705 3.65845 3.75884 3.88975 3.94946 3.98463 4.04662 4.16572 4.25175 4.30622 4.31681 4.37263 4.43821 4.46733 4.51805 4.65936 4.68114 4.74299 4.80743 4.86912 4.91114 5.02633 5.06429 5.07428 5.15919 5.19851 5.27289 5.38707 5.43675 5.51537 5.69652 5.75593 5.88682 6.21195 6.33507 6.49376 7.08815 7.21802 7.22397 8.75511 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.002847 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.063557 B = 9832.364782 C =11107.102571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C -0.072 4.072 4 C -0.135 4.135 5 C 0.515 3.485 6 O -0.578 6.578 7 N -0.713 5.713 8 C 0.137 3.863 9 H 0.091 0.909 10 C -0.123 4.123 11 C -0.126 4.126 12 C 0.101 3.899 13 N -0.604 5.604 14 C 0.534 3.466 15 O -0.543 6.543 16 C -0.127 4.127 17 S -0.145 6.145 18 C -0.544 4.544 19 H 0.081 0.919 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.994 3.006 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.259 1.259 26 C 0.143 3.857 27 H 0.106 0.894 28 C -0.129 4.129 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.403 0.597 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.270 0.730 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 12.658 -12.887 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.182 4.182 3 C -0.109 4.109 4 C -0.175 4.175 5 C 0.303 3.697 6 O -0.459 6.459 7 N -0.364 5.364 8 C 0.031 3.969 9 H 0.109 0.891 10 C -0.162 4.162 11 C -0.164 4.164 12 C -0.021 4.021 13 N -0.339 5.339 14 C 0.322 3.678 15 O -0.420 6.420 16 C -0.279 4.279 17 S 0.083 5.917 18 C -0.692 4.692 19 H 0.099 0.901 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.816 3.184 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.183 1.183 26 C 0.040 3.960 27 H 0.124 0.876 28 C -0.186 4.186 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.203 11.939 -14.450 22.367 hybrid contribution -0.496 0.144 2.062 2.125 sum -12.699 12.083 -12.388 21.465 Atomic orbital electron populations 1.24037 0.95918 1.02556 1.00376 1.23021 0.96374 0.98237 1.00559 1.20395 0.97435 0.95655 0.97449 1.21663 0.99233 0.94794 1.01827 1.21049 0.79324 0.89179 0.80149 1.90663 1.66899 1.49581 1.38721 1.46059 1.40165 1.19870 1.30281 1.21477 0.90768 0.84426 1.00223 0.89104 1.21859 1.00476 0.98281 0.95563 1.21834 0.96552 1.02490 0.95499 1.22040 0.90482 0.94238 0.95339 1.48127 1.49887 1.24739 1.11177 1.20019 0.78433 0.80857 0.88482 1.90781 1.41473 1.45808 1.63972 1.23443 1.05298 1.03101 0.96009 1.85505 1.70914 1.26169 1.09148 1.23185 1.40020 1.12147 0.93868 0.90109 1.26068 0.94211 0.94076 1.04670 1.70175 1.35095 1.11189 1.38249 0.85013 0.78088 0.78997 0.76278 1.19334 1.20513 1.18266 1.21716 0.94888 1.00050 0.79385 0.87642 1.22031 1.00439 0.97531 0.98578 0.87292 0.88450 0.86413 0.91752 0.91363 0.87665 0.87548 0.76214 0.92057 0.88811 0.92497 0.88406 0.89219 0.88893 0.87681 0.88042 0.92083 0.92536 0.92804 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 67.78 0.97 -1.76 16 2 C -0.16 -2.53 9.52 25.65 0.24 -2.29 16 3 C -0.07 -1.28 4.95 29.85 0.15 -1.13 16 4 C -0.14 -2.34 5.68 29.84 0.17 -2.17 16 5 C 0.51 11.34 7.79 87.65 0.68 12.02 16 6 O -0.58 -16.27 15.65 -3.04 -0.05 -16.31 16 7 N -0.71 -14.47 3.53 -441.48 -1.56 -16.03 16 8 C 0.14 2.54 2.33 45.21 0.11 2.65 16 9 H 0.09 1.85 7.58 -2.39 -0.02 1.83 16 10 C -0.12 -1.83 5.57 30.62 0.17 -1.66 16 11 C -0.13 -1.74 5.93 30.67 0.18 -1.55 16 12 C 0.10 1.61 6.32 86.36 0.55 2.16 16 13 N -0.60 -13.69 2.62 -794.24 -2.08 -15.77 16 14 C 0.53 17.56 7.62 87.66 0.67 18.23 16 15 O -0.54 -21.83 11.26 -3.03 -0.03 -21.86 16 16 C -0.13 -4.67 4.56 71.23 0.32 -4.34 16 17 S -0.14 -7.62 20.57 -56.49 -1.16 -8.78 16 18 C -0.54 -29.99 9.50 67.96 0.65 -29.34 16 19 H 0.08 4.14 7.80 -2.91 -0.02 4.11 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -54.66 13.22 21.65 0.29 -54.37 16 22 Si 0.99 42.51 29.55 68.60 2.03 44.54 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 C 0.14 2.90 3.22 45.12 0.15 3.05 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 C -0.13 -3.34 7.32 71.98 0.53 -2.82 16 29 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.10 1.33 7.84 -2.91 -0.02 1.31 16 31 H 0.12 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.06 1.24 7.75 -2.39 -0.02 1.23 16 33 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.40 8.63 7.80 -92.71 -0.72 7.91 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.94 7.53 -2.38 -0.02 0.92 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.51 5.96 -2.39 -0.01 1.49 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.11 3.46 7.48 -2.40 -0.02 3.45 16 44 H 0.10 3.45 8.11 -2.40 -0.02 3.43 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.06 1.70 5.85 -2.38 -0.01 1.69 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.05 1.63 6.77 -2.39 -0.02 1.61 16 Total: -1.00 -73.14 396.00 3.65 -69.49 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.22 Total: 26.77 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 6.00 Total: -7.68 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.36 Total: -86.17 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.08 Total: -38.17 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -1.16 Total: -8.78 kcal Total: -73.14 3.65 -69.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680650469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.771 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds