Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47402 * 2 1 4 4 C 1.50705 * 109.47197 * 240.00042 * 2 1 3 5 5 O 1.21277 * 119.99705 * 274.99367 * 4 2 1 6 6 N 1.34780 * 119.99705 * 94.99451 * 4 2 1 7 7 C 1.47424 * 125.64826 * 354.89315 * 6 4 2 8 8 C 1.54909 * 104.82762 * 204.16354 * 7 6 4 9 9 C 1.55151 * 101.58456 * 322.98853 * 8 7 6 10 10 H 1.08997 * 110.72649 * 276.96490 * 9 8 7 11 11 N 1.46497 * 110.72212 * 153.86514 * 9 8 7 12 12 C 1.34779 * 119.99909 * 86.45507 * 11 9 8 13 13 O 1.21276 * 120.00059 * 0.02562 * 12 11 9 14 14 C 1.50704 * 119.99983 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.46946 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99691 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99587 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47132 * 269.99661 * 20 18 16 22 22 H 1.48497 * 109.47466 * 29.99715 * 20 18 16 23 23 H 1.48501 * 109.47042 * 149.99588 * 20 18 16 24 24 C 1.47016 * 125.64493 * 174.93281 * 6 4 2 25 25 H 1.09005 * 109.88192 * 59.48747 * 24 6 4 26 26 C 1.52998 * 109.88580 * 298.32613 * 24 6 4 27 27 C 1.53000 * 109.47262 * 120.00180 * 2 1 3 28 28 C 1.53000 * 117.50256 * 248.62437 * 27 2 1 29 29 C 1.52996 * 117.50224 * 179.97438 * 27 2 1 30 30 H 1.08998 * 109.46944 * 304.98995 * 1 2 3 31 31 H 1.09001 * 109.46881 * 64.99460 * 1 2 3 32 32 H 1.08999 * 109.46703 * 184.98947 * 1 2 3 33 33 H 1.08999 * 110.36611 * 85.32656 * 7 6 4 34 34 H 1.08994 * 110.36795 * 323.00636 * 7 6 4 35 35 H 1.09007 * 110.99841 * 204.91505 * 8 7 6 36 36 H 1.08997 * 111.03726 * 81.08512 * 8 7 6 37 37 H 0.97000 * 120.00498 * 266.46259 * 11 9 8 38 38 H 1.09000 * 109.47304 * 59.99972 * 14 12 11 39 39 H 1.09004 * 109.47148 * 300.00007 * 14 12 11 40 40 H 0.96996 * 120.00527 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.47096 * 302.18917 * 26 24 6 42 42 H 1.08991 * 109.47374 * 62.18942 * 26 24 6 43 43 H 1.09004 * 109.46934 * 182.19603 * 26 24 6 44 44 H 1.09004 * 115.55190 * 34.32832 * 27 2 1 45 45 H 1.09011 * 117.49349 * 359.97438 * 28 27 2 46 46 H 1.08994 * 117.50291 * 145.01348 * 28 27 2 47 47 H 1.08993 * 117.50442 * 214.97914 * 29 27 2 48 48 H 1.09003 * 117.49587 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1483 -1.9176 -1.2288 6 7 2.3528 -0.0041 -2.3328 7 6 2.1614 1.4470 -2.5091 8 6 2.0770 1.6523 -4.0422 9 6 3.1124 0.6158 -4.5529 10 1 4.1216 1.0253 -4.5095 11 7 2.7874 0.1864 -5.9153 12 6 3.2340 0.8965 -6.9702 13 8 3.9053 1.8906 -6.7916 14 6 2.8992 0.4550 -8.3717 15 16 3.6364 1.6054 -9.5588 16 6 3.1016 0.8713 -11.0688 17 1 2.5013 -0.0262 -11.0499 18 6 3.4529 1.4459 -12.2824 19 7 4.1850 2.5395 -12.3054 20 14 2.8865 0.6673 -13.8831 21 1 3.8993 -0.3182 -14.3397 22 1 1.5886 -0.0210 -13.6668 23 1 2.7215 1.7219 -14.9154 24 6 2.9503 -0.5533 -3.5586 25 1 2.2935 -1.3127 -3.9831 26 6 4.3183 -1.1618 -3.2433 27 6 2.0400 -0.7213 1.2492 28 6 2.7419 0.1225 2.3152 29 6 3.5550 -0.8287 1.4340 30 1 -0.3633 0.5893 0.8419 31 1 -0.3633 0.4344 -0.9314 32 1 -0.3633 -1.0238 0.0894 33 1 3.0104 1.9942 -2.0993 34 1 1.2358 1.7683 -2.0317 35 1 2.3700 2.6655 -4.3174 36 1 1.0783 1.4223 -4.4134 37 1 2.2508 -0.6089 -6.0582 38 1 1.8169 0.4445 -8.5006 39 1 3.2951 -0.5463 -8.5416 40 1 4.4302 2.9414 -13.1535 41 1 4.9615 -0.4006 -2.8016 42 1 4.1961 -1.9863 -2.5411 43 1 4.7719 -1.5318 -4.1628 44 1 1.4311 -1.5586 1.5902 45 1 2.8407 1.1916 2.1262 46 1 2.5947 -0.1594 3.3577 47 1 3.9425 -1.7360 1.8971 48 1 4.1884 -0.3851 0.6657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001685167190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -53.709707 kcal Electronic energy + Delta-G solvation = -27199.583140 eV Core-core repulsion = 23381.211630 eV Total energy + Delta-G solvation = -3818.371510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90921 -39.46176 -38.13146 -37.02418 -34.24980 -32.91915 -32.45132 -31.53948 -30.91930 -28.89398 -25.69891 -25.42151 -25.22984 -23.32833 -22.70804 -22.01011 -20.71925 -20.46328 -18.96425 -17.87721 -17.53884 -16.99507 -16.25076 -16.04341 -15.58480 -15.23122 -14.99619 -14.84641 -14.81695 -14.44621 -14.05814 -13.90709 -13.50346 -13.32573 -13.10490 -12.97364 -12.68422 -12.64740 -12.54246 -12.32108 -12.11428 -12.03393 -11.92618 -11.77823 -11.48856 -11.35720 -11.08245 -11.05083 -11.02504 -10.79155 -10.77549 -10.57297 -9.85606 -9.81109 -9.48837 -9.09950 -9.04083 -8.92851 -8.27289 -6.52902 -6.24021 -3.94792 2.34259 2.47322 2.99339 3.01724 3.21050 3.26567 3.30323 3.42151 3.66711 4.01910 4.08854 4.18281 4.25325 4.41300 4.46728 4.67226 4.72518 4.79049 4.81116 4.84623 4.89616 5.03514 5.08068 5.11212 5.11830 5.22705 5.25906 5.31753 5.35717 5.43346 5.46364 5.54257 5.60348 5.65132 5.70462 5.73274 5.78269 5.84666 5.84857 5.89552 6.01065 6.05964 6.10636 6.53009 7.19227 7.57362 7.60131 7.90263 8.33056 8.51865 9.21532 10.83380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032575 B = 0.001877 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.355472 B =14910.733081 C =14951.382794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 H 0.090 0.910 4 C 0.538 3.462 5 O -0.531 6.531 6 N -0.616 5.616 7 C 0.099 3.901 8 C -0.146 4.146 9 C 0.142 3.858 10 H 0.106 0.894 11 N -0.730 5.730 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.272 1.272 23 H -0.282 1.282 24 C 0.131 3.869 25 H 0.081 0.919 26 C -0.161 4.161 27 C -0.135 4.135 28 C -0.177 4.177 29 C -0.172 4.172 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.400 0.600 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 -4.684 27.914 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 H 0.108 0.892 4 C 0.326 3.674 5 O -0.406 6.406 6 N -0.351 5.351 7 C -0.025 4.025 8 C -0.185 4.185 9 C 0.036 3.964 10 H 0.124 0.876 11 N -0.385 5.385 12 C 0.322 3.678 13 O -0.388 6.388 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.197 1.197 23 H -0.207 1.207 24 C 0.027 3.973 25 H 0.099 0.901 26 C -0.219 4.219 27 C -0.153 4.153 28 C -0.214 4.214 29 C -0.209 4.209 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.094 -3.582 28.160 28.840 hybrid contribution -1.375 -1.944 -1.377 2.750 sum -6.469 -5.525 26.783 28.102 Atomic orbital electron populations 1.21694 0.92044 1.03226 1.02606 1.20881 0.97906 0.99588 0.91350 0.89188 1.20296 0.76898 0.87254 0.82919 1.90691 1.53159 1.13931 1.82863 1.48585 1.62588 1.09202 1.14736 1.22394 1.01903 0.80996 0.97158 1.23252 1.00583 1.01369 0.93329 1.21900 1.00202 0.93047 0.81291 0.87639 1.45970 1.56782 1.31117 1.04612 1.20323 0.78510 0.82938 0.85987 1.90701 1.37098 1.25123 1.85862 1.23539 1.05359 1.06178 0.95388 1.85381 1.68578 1.33256 0.96037 1.22867 1.39074 1.14768 0.91717 0.90905 1.24990 0.94736 0.94863 0.98977 1.70008 1.34705 1.18624 1.26931 0.86167 0.79043 0.78812 0.81479 1.20258 1.19697 1.20740 1.21670 0.95465 0.95435 0.84733 0.90140 1.22118 0.95316 1.01629 1.02843 1.22024 0.95704 1.01745 0.95853 1.23082 1.04422 0.97544 0.96362 1.22899 0.93599 1.01651 1.02786 0.91102 0.92085 0.91610 0.90857 0.90172 0.88726 0.90017 0.76586 0.89149 0.89123 0.92163 0.92250 0.91178 0.91145 0.87117 0.88705 0.88557 0.88592 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.16 37.16 0.34 -0.50 16 2 C -0.08 -0.55 2.31 -91.77 -0.21 -0.76 16 3 H 0.09 0.53 6.89 -51.93 -0.36 0.17 16 4 C 0.54 5.49 6.25 -10.98 -0.07 5.42 16 5 O -0.53 -7.28 15.70 5.56 0.09 -7.20 16 6 N -0.62 -5.66 3.06 -163.02 -0.50 -6.16 16 7 C 0.10 0.71 6.17 -2.53 -0.02 0.69 16 8 C -0.15 -1.34 6.77 -24.59 -0.17 -1.51 16 9 C 0.14 1.54 2.76 -66.10 -0.18 1.36 16 10 H 0.11 1.31 7.41 -51.93 -0.38 0.92 16 11 N -0.73 -9.03 5.20 -52.03 -0.27 -9.30 16 12 C 0.54 9.35 7.85 -10.98 -0.09 9.26 16 13 O -0.51 -10.90 15.59 5.56 0.09 -10.81 16 14 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 15 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 20 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.13 1.31 3.18 -66.95 -0.21 1.09 16 25 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 26 C -0.16 -1.64 9.10 37.16 0.34 -1.30 16 27 C -0.13 -1.00 4.67 -90.62 -0.42 -1.42 16 28 C -0.18 -1.04 10.18 -26.71 -0.27 -1.31 16 29 C -0.17 -1.31 9.87 -26.71 -0.26 -1.58 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.36 7.97 -51.93 -0.41 -0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.44 7.51 -51.93 -0.39 0.05 16 35 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.40 3.97 8.31 -40.82 -0.34 3.63 16 38 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 39 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.80 7.08 -51.93 -0.37 0.44 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 45 H 0.09 0.48 8.05 -51.92 -0.42 0.07 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -34.82 406.47 -9.89 -44.71 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.11 Total: 1.47 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.80 Total: -6.11 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.04 Total: -40.60 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.82 -9.89 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685167190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.002 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds