Wall clock time and date at job start Sat Apr 11 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47402 * 2 1 4 4 C 1.50705 * 109.47197 * 240.00042 * 2 1 3 5 5 O 1.21277 * 119.99705 * 274.99367 * 4 2 1 6 6 N 1.34780 * 119.99705 * 94.99451 * 4 2 1 7 7 C 1.47424 * 125.64826 * 354.89315 * 6 4 2 8 8 C 1.54909 * 104.82762 * 204.16354 * 7 6 4 9 9 C 1.55151 * 101.58456 * 322.98853 * 8 7 6 10 10 H 1.08997 * 110.72649 * 276.96490 * 9 8 7 11 11 N 1.46497 * 110.72212 * 153.86514 * 9 8 7 12 12 C 1.34779 * 119.99909 * 86.45507 * 11 9 8 13 13 O 1.21276 * 120.00059 * 0.02562 * 12 11 9 14 14 C 1.50704 * 119.99983 * 180.02562 * 12 11 9 15 15 S 1.80999 * 109.46946 * 179.97438 * 14 12 11 16 16 C 1.76208 * 99.99691 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00132 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99587 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47132 * 269.99661 * 20 18 16 22 22 H 1.48497 * 109.47466 * 29.99715 * 20 18 16 23 23 H 1.48501 * 109.47042 * 149.99588 * 20 18 16 24 24 C 1.47016 * 125.64493 * 174.93281 * 6 4 2 25 25 H 1.09005 * 109.88192 * 59.48747 * 24 6 4 26 26 C 1.52998 * 109.88580 * 298.32613 * 24 6 4 27 27 C 1.53000 * 109.47262 * 120.00180 * 2 1 3 28 28 C 1.53000 * 117.50256 * 248.62437 * 27 2 1 29 29 C 1.52996 * 117.50224 * 179.97438 * 27 2 1 30 30 H 1.08998 * 109.46944 * 304.98995 * 1 2 3 31 31 H 1.09001 * 109.46881 * 64.99460 * 1 2 3 32 32 H 1.08999 * 109.46703 * 184.98947 * 1 2 3 33 33 H 1.08999 * 110.36611 * 85.32656 * 7 6 4 34 34 H 1.08994 * 110.36795 * 323.00636 * 7 6 4 35 35 H 1.09007 * 110.99841 * 204.91505 * 8 7 6 36 36 H 1.08997 * 111.03726 * 81.08512 * 8 7 6 37 37 H 0.97000 * 120.00498 * 266.46259 * 11 9 8 38 38 H 1.09000 * 109.47304 * 59.99972 * 14 12 11 39 39 H 1.09004 * 109.47148 * 300.00007 * 14 12 11 40 40 H 0.96996 * 120.00527 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.47096 * 302.18917 * 26 24 6 42 42 H 1.08991 * 109.47374 * 62.18942 * 26 24 6 43 43 H 1.09004 * 109.46934 * 182.19603 * 26 24 6 44 44 H 1.09004 * 115.55190 * 34.32832 * 27 2 1 45 45 H 1.09011 * 117.49349 * 359.97438 * 28 27 2 46 46 H 1.08994 * 117.50291 * 145.01348 * 28 27 2 47 47 H 1.08993 * 117.50442 * 214.97914 * 29 27 2 48 48 H 1.09003 * 117.49587 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1483 -1.9176 -1.2288 6 7 2.3528 -0.0041 -2.3328 7 6 2.1614 1.4470 -2.5091 8 6 2.0770 1.6523 -4.0422 9 6 3.1124 0.6158 -4.5529 10 1 4.1216 1.0253 -4.5095 11 7 2.7874 0.1864 -5.9153 12 6 3.2340 0.8965 -6.9702 13 8 3.9053 1.8906 -6.7916 14 6 2.8992 0.4550 -8.3717 15 16 3.6364 1.6054 -9.5588 16 6 3.1016 0.8713 -11.0688 17 1 2.5013 -0.0262 -11.0499 18 6 3.4529 1.4459 -12.2824 19 7 4.1850 2.5395 -12.3054 20 14 2.8865 0.6673 -13.8831 21 1 3.8993 -0.3182 -14.3397 22 1 1.5886 -0.0210 -13.6668 23 1 2.7215 1.7219 -14.9154 24 6 2.9503 -0.5533 -3.5586 25 1 2.2935 -1.3127 -3.9831 26 6 4.3183 -1.1618 -3.2433 27 6 2.0400 -0.7213 1.2492 28 6 2.7419 0.1225 2.3152 29 6 3.5550 -0.8287 1.4340 30 1 -0.3633 0.5893 0.8419 31 1 -0.3633 0.4344 -0.9314 32 1 -0.3633 -1.0238 0.0894 33 1 3.0104 1.9942 -2.0993 34 1 1.2358 1.7683 -2.0317 35 1 2.3700 2.6655 -4.3174 36 1 1.0783 1.4223 -4.4134 37 1 2.2508 -0.6089 -6.0582 38 1 1.8169 0.4445 -8.5006 39 1 3.2951 -0.5463 -8.5416 40 1 4.4302 2.9414 -13.1535 41 1 4.9615 -0.4006 -2.8016 42 1 4.1961 -1.9863 -2.5411 43 1 4.7719 -1.5318 -4.1628 44 1 1.4311 -1.5586 1.5902 45 1 2.8407 1.1916 2.1262 46 1 2.5947 -0.1594 3.3577 47 1 3.9425 -1.7360 1.8971 48 1 4.1884 -0.3851 0.6657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001685167190.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:31 Heat of formation + Delta-G solvation = -76.002078 kcal Electronic energy + Delta-G solvation = -27200.549810 eV Core-core repulsion = 23381.211630 eV Total energy + Delta-G solvation = -3819.338180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73770 -40.60826 -39.02651 -37.77781 -35.35853 -34.57981 -33.61063 -32.31375 -31.94836 -30.20299 -27.68099 -26.40934 -25.88079 -24.02870 -23.23182 -22.84167 -21.74591 -21.42289 -19.89231 -19.61490 -18.34711 -18.02775 -17.44388 -17.04540 -16.87385 -16.39332 -16.31691 -15.98330 -15.79338 -15.43937 -15.13266 -14.85668 -14.78901 -14.45623 -14.21529 -13.99361 -13.65182 -13.47945 -13.40625 -13.18938 -13.16020 -12.97748 -12.89295 -12.73213 -12.62734 -12.60313 -12.41323 -12.27252 -12.02413 -11.87146 -11.71586 -11.38379 -11.14073 -11.10641 -10.98053 -10.55529 -10.27225 -10.15166 -9.74381 -8.65208 -8.34510 -6.11782 1.25167 1.42308 1.44801 1.54732 1.58954 1.59860 1.78460 2.26804 2.33273 2.86542 2.99755 3.23659 3.32360 3.49463 3.55939 3.75835 3.88160 3.91854 3.94806 4.12220 4.14632 4.18535 4.21119 4.26535 4.31405 4.35100 4.52448 4.53171 4.54476 4.63474 4.67123 4.77725 4.85278 4.87187 4.93234 5.00937 5.03397 5.05765 5.13505 5.18231 5.23556 5.27723 5.33331 5.42610 5.45194 6.20216 6.40934 6.48607 7.07236 7.13278 7.20397 8.74507 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032575 B = 0.001877 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.355472 B =14910.733081 C =14951.382794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 H 0.111 0.889 4 C 0.534 3.466 5 O -0.573 6.573 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.142 4.142 9 C 0.141 3.859 10 H 0.091 0.909 11 N -0.706 5.706 12 C 0.542 3.458 13 O -0.556 6.556 14 C -0.132 4.132 15 S -0.145 6.145 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.259 1.259 23 H -0.278 1.278 24 C 0.136 3.864 25 H 0.079 0.921 26 C -0.155 4.155 27 C -0.145 4.145 28 C -0.154 4.154 29 C -0.190 4.190 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.415 0.585 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.271 0.729 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 -5.020 29.003 30.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 H 0.129 0.871 4 C 0.324 3.676 5 O -0.451 6.451 6 N -0.349 5.349 7 C -0.020 4.020 8 C -0.181 4.181 9 C 0.035 3.965 10 H 0.109 0.891 11 N -0.360 5.360 12 C 0.328 3.672 13 O -0.434 6.434 14 C -0.283 4.283 15 S 0.082 5.918 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.546 5.546 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.183 1.183 23 H -0.203 1.203 24 C 0.032 3.968 25 H 0.097 0.903 26 C -0.213 4.213 27 C -0.164 4.164 28 C -0.191 4.191 29 C -0.228 4.228 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.109 0.891 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.871 -3.934 29.287 30.338 hybrid contribution -0.828 -1.898 -1.590 2.611 sum -7.698 -5.832 27.697 29.332 Atomic orbital electron populations 1.21701 0.90953 1.02838 1.03787 1.20934 0.98675 1.00054 0.89503 0.87102 1.20900 0.76109 0.86906 0.83641 1.90673 1.55003 1.15863 1.83590 1.48640 1.61961 1.10079 1.14195 1.22533 1.03968 0.79721 0.95783 1.23199 0.99906 1.00189 0.94800 1.21958 1.00249 0.94037 0.80235 0.89057 1.45684 1.55431 1.30651 1.04277 1.19951 0.78347 0.82733 0.86183 1.90694 1.39295 1.27121 1.86270 1.23385 1.05829 1.04609 0.94480 1.85519 1.70401 1.37094 0.98817 1.23210 1.39069 1.14999 0.92238 0.90004 1.26092 0.94623 0.95286 1.03068 1.70167 1.36147 1.20333 1.27995 0.84982 0.79035 0.77893 0.76257 1.19431 1.18275 1.20276 1.21528 0.95335 0.94902 0.85079 0.90295 1.22049 0.95642 1.01197 1.02457 1.22057 0.95260 1.02320 0.96756 1.23162 1.01750 0.97838 0.96370 1.22899 0.93807 1.02390 1.03657 0.89055 0.91544 0.93014 0.89462 0.87459 0.89451 0.89591 0.74795 0.87183 0.87366 0.91994 0.91966 0.92570 0.91144 0.87955 0.87273 0.87458 0.89136 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.16 71.98 0.66 -0.65 16 2 C -0.07 -0.87 2.31 -11.54 -0.03 -0.90 16 3 H 0.11 0.90 6.89 -2.39 -0.02 0.88 16 4 C 0.53 10.25 6.25 87.66 0.55 10.79 16 5 O -0.57 -15.68 15.70 -3.02 -0.05 -15.73 16 6 N -0.61 -10.23 3.06 -788.06 -2.41 -12.65 16 7 C 0.10 1.19 6.17 86.86 0.54 1.72 16 8 C -0.14 -2.34 6.77 31.98 0.22 -2.12 16 9 C 0.14 2.89 2.76 46.18 0.13 3.02 16 10 H 0.09 2.22 7.41 -2.39 -0.02 2.20 16 11 N -0.71 -16.47 5.20 -436.93 -2.27 -18.74 16 12 C 0.54 18.57 7.85 87.66 0.69 19.26 16 13 O -0.56 -23.88 15.59 -3.02 -0.05 -23.93 16 14 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 15 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 16 C -0.55 -30.82 9.50 67.96 0.65 -30.18 16 17 H 0.08 4.29 7.80 -2.92 -0.02 4.26 16 18 C 0.01 0.80 5.49 84.86 0.47 1.27 16 19 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 20 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.14 2.56 3.18 45.34 0.14 2.70 16 25 H 0.08 1.54 7.69 -2.38 -0.02 1.52 16 26 C -0.16 -3.12 9.10 71.98 0.66 -2.46 16 27 C -0.15 -1.96 4.67 -10.79 -0.05 -2.01 16 28 C -0.15 -1.46 10.18 30.61 0.31 -1.15 16 29 C -0.19 -2.77 9.87 30.61 0.30 -2.47 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.58 7.97 -2.39 -0.02 0.56 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.74 7.51 -2.39 -0.02 0.72 16 35 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.41 7.35 8.31 -92.71 -0.77 6.57 16 38 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 1.30 7.08 -2.39 -0.02 1.29 16 43 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.10 1.53 8.11 -2.38 -0.02 1.51 16 45 H 0.11 0.74 8.05 -2.38 -0.02 0.72 16 46 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.08 406.47 2.21 -75.88 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.18 Total: 21.67 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.66 Total: -7.74 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -4.40 Total: -86.37 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.09 Total: -39.65 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -78.08 2.21 -75.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685167190.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.124 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds